CsaV3_6G004890 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G004890
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	MRN complex-interacting protein isoform X2
Location	chr6: 4131864 .. 4133860 (-)
RNA-Seq Expression	CsaV3_6G004890
Synteny	CsaV3_6G004890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAATTGAAACACAAATACAGAAAAAGTTGAGTCAAAAGCATAGCAGGAAATGGCGACGATCTTCATCGCCGTCCAGTGCTTTCAATGTTCCACCATGCAGGTACCCAACTCTCTCTCACTGTTTCTTAGTTCTTCAACGTCTCTCCCTACCTTCTGTAATGGCGATGGTTTCGATTTAGGTGAAGCAGCAGCGGAAGAGCGGGAACAAGTGGATCTGTGCAGTGTGTAACCAGAAGCAATCGGTGCAGAAGGTGTTTGCTCGAGCTCCAATGGCTAAAGACGTCCGTAAATTCGTACAAAGCTTCAATATGTCACGGAAATATGCGAATGAACAGGCGAACGTGGACGAGCTAATTGATGGAGGGATTGTTGATGACGATAAGCTTGTTTGCAGTGGGAGGAGAAAGAGCCGTAGCGATTGGAGTGACTATCTCGATCCGGTGGAAGATCGGAGCCATAGTGGAAGAGAAAACGAAGTAGAATTAGGTCACTAATTTTTTAAACACATATTTGCAATTAGTTTTAATCAACTTGGAAGAAAAATCTTTGTTAGATGATGATTTTCCTCCTGTATCAGAAAGTGATTTAAAGATCGTGACGGAGCTTCCAGACATTAAAACCTGGAAATCTGGTTCAAGGAGCTGTTCAAGCTGGTCGGAAGAAGGAGAAGGCGATGGACTTTACAGACCACTTTTCTCTAAGAGAAAACATATAGCCAATAATTTGAGCTCCCAAGGTAAAAATTGATGTTCATATAACTTCTTGCACTTCAAGAAAAAAAAAAGATAAAAAACGTCAATAAAATTGCAGATGAGATCCGAAACTGGGAGTCGCCGTCAGCAATTCACGCATCAAAATTGAGTAAAGGCGATGATGAGCAAACTCTCTCGACGGCCAAATACTTGAGTGCGCCTTTCCAGGACAAGAAGATGGGCAAAAACGGCCATAAAGTTGAGGATGAGATTCAAAACTGGGAGTTGCCATCAGAAATTGAAGCATCAAAGTGGAGTAAAGATGATGAAAATTTAAGGACGAAAAGTTGCATATTAGGTAAGGTAAGAGGAGCTTCATCAAAGTGGAGTGAATACATAACTGAAGAAGAAAATTGTGGAGGCAGAAACGAAGAAAATATGGCGAGAGAAGAGGGAATGGATGTCTTGAAGATGATGATAAATGAAGAAATTGTTGAAGATGATATCCACCCTGATTTCAAATGACAATGACAAAGCAAAATAATACCATTTGTGATTAAAAAAAAAAATTTGAGTTTGGTATTGTTCATGATTCAAGACTCTGCATATAGCAACTATTGTTTTGGTAGAATTTGTCAGTTTGGAAGAATAAAACAAGAAGTTTTAATGTTGTAGATAATTGCAAATGACAATGATTAACAAATGAATTGGTACATTCTTCACTAAATGATACCAACTTTTAATAGTGAAAATAAGAGGTTTAAAGCACACATTTGGAAATCATTTCAAACTCACAATGTATTAGACTACAAAGATTTGAAACATGAAAAATAACAATGTAAAGAAAACCTTGAATAATGACTCATGAGCAATAATAATATGAAATAACTACAAATAAGAGCAAAAACAAGAACACGAAATCAGTGTTAAATATCAAAGAAAACTGTAGGTTAGATAACAAATGTGTCATCATAGATCTAACAAAACCAAACAAATCCTCAGTACCAAAATTCTAAAATATCCAAAACTATAATTAAATAAAAAAATGCCGCCGGATTTTTTTTTTAAAAAATACCTAATATAGATAGGAAAGAAATTAAAAAGGGAAAAAGAAAAAAATATAAAACCCAACCATAAAAATATGTTCAGCATGCAGAATAAAGAATGTTGTAAGGAAAATTGAATGTCAGGGAACCCGTGCTTTCTTTTTCAGTCTTTGTTCATTTGGTCAGGGTCAATGCACCAAGCTGATCAGAAAGCTCGGGTTCCGACGAAGCTTTGCGAAGGACTTCCATTGCCTCAG

mRNA sequence

ATGGCGACGATCTTCATCGCCGTCCAGTGCTTTCAATGTTCCACCATGCAGGTGAAGCAGCAGCGGAAGAGCGGGAACAAGTGGATCTGTGCAGTGTGTAACCAGAAGCAATCGGTGCAGAAGGTGTTTGCTCGAGCTCCAATGGCTAAAGACGTCCGTAAATTCGTACAAAGCTTCAATATGTCACGGAAATATGCGAATGAACAGGCGAACGTGGACGAGCTAATTGATGGAGGGATTGTTGATGACGATAAGCTTGTTTGCAGTGGGAGGAGAAAGAGCCGTAGCGATTGGAGTGACTATCTCGATCCGGTGGAAGATCGGAGCCATAGTGGAAGAGAAAACGAAGTAGAATTAGAAAGTGATTTAAAGATCGTGACGGAGCTTCCAGACATTAAAACCTGGAAATCTGGTTCAAGGAGCTGTTCAAGCTGGTCGGAAGAAGGAGAAGGCGATGGACTTTACAGACCACTTTTCTCTAAGAGAAAACATATAGCCAATAATTTGAGCTCCCAAGATGAGATCCGAAACTGGGAGTCGCCGTCAGCAATTCACGCATCAAAATTGAGTAAAGGCGATGATGAGCAAACTCTCTCGACGGCCAAATACTTGAGTGCGCCTTTCCAGGACAAGAAGATGGGCAAAAACGGCCATAAAGTTGAGGATGAGATTCAAAACTGGGAGTTGCCATCAGAAATTGAAGCATCAAAGTGGAGTAAAGATGATGAAAATTTAAGGACGAAAAGTTGCATATTAGGTAAGGTAAGAGGAGCTTCATCAAAGTGGAGTGAATACATAACTGAAGAAGAAAATTGTGGAGGCAGAAACGAAGAAAATATGGCGAGAGAAGAGGGAATGGATGTCTTGAAGATGATGATAAATGAAGAAATTGTTGAAGATGATATCCACCCTGATTTCAAATGA

Coding sequence (CDS)

ATGGCGACGATCTTCATCGCCGTCCAGTGCTTTCAATGTTCCACCATGCAGGTGAAGCAGCAGCGGAAGAGCGGGAACAAGTGGATCTGTGCAGTGTGTAACCAGAAGCAATCGGTGCAGAAGGTGTTTGCTCGAGCTCCAATGGCTAAAGACGTCCGTAAATTCGTACAAAGCTTCAATATGTCACGGAAATATGCGAATGAACAGGCGAACGTGGACGAGCTAATTGATGGAGGGATTGTTGATGACGATAAGCTTGTTTGCAGTGGGAGGAGAAAGAGCCGTAGCGATTGGAGTGACTATCTCGATCCGGTGGAAGATCGGAGCCATAGTGGAAGAGAAAACGAAGTAGAATTAGAAAGTGATTTAAAGATCGTGACGGAGCTTCCAGACATTAAAACCTGGAAATCTGGTTCAAGGAGCTGTTCAAGCTGGTCGGAAGAAGGAGAAGGCGATGGACTTTACAGACCACTTTTCTCTAAGAGAAAACATATAGCCAATAATTTGAGCTCCCAAGATGAGATCCGAAACTGGGAGTCGCCGTCAGCAATTCACGCATCAAAATTGAGTAAAGGCGATGATGAGCAAACTCTCTCGACGGCCAAATACTTGAGTGCGCCTTTCCAGGACAAGAAGATGGGCAAAAACGGCCATAAAGTTGAGGATGAGATTCAAAACTGGGAGTTGCCATCAGAAATTGAAGCATCAAAGTGGAGTAAAGATGATGAAAATTTAAGGACGAAAAGTTGCATATTAGGTAAGGTAAGAGGAGCTTCATCAAAGTGGAGTGAATACATAACTGAAGAAGAAAATTGTGGAGGCAGAAACGAAGAAAATATGGCGAGAGAAGAGGGAATGGATGTCTTGAAGATGATGATAAATGAAGAAATTGTTGAAGATGATATCCACCCTGATTTCAAATGA

Protein sequence

MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFNMSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELESDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWESPSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSKDDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVEDDIHPDFK*

Homology

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BLAST of CsaV3_6G004890 vs. NCBI nr
Match: XP_004141004.1 (MRN complex-interacting protein [Cucumis sativus] >KGN46102.1 hypothetical protein Csa_005258 [Cucumis sativus])

HSP 1 Score: 619.8 bits (1597), Expect = 1.3e-173
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE
Sbjct: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120

Query: 121 SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES 180
           SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES
Sbjct: 121 SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES 180

Query: 181 PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK 240
           PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK
Sbjct: 181 PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK 240

Query: 241 DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED 300
           DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED
Sbjct: 241 DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED 300

Query: 301 DIHPDFK 308
           DIHPDFK
Sbjct: 301 DIHPDFK 307

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BLAST of CsaV3_6G004890 vs. NCBI nr
Match: XP_008456719.1 (PREDICTED: UPF0544 protein C5orf45 homolog [Cucumis melo] >KAA0031637.1 UPF0544 protein C5orf45-like protein [Cucumis melo var. makuwa] >TYK04473.1 UPF0544 protein C5orf45-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 567.8 bits (1462), Expect = 5.8e-158
Identity = 283/307 (92.18%), Postives = 292/307 (95.11%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCN+KQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYANEQANVD+LI GGIVDDDKL CSGRRK R+DWS+YLDP EDRSHSGRENE ELE
Sbjct: 61  MSRKYANEQANVDDLIHGGIVDDDKLDCSGRRKRRNDWSEYLDPEEDRSHSGRENEGELE 120

Query: 121 SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES 180
           SDLKI TELPDIKTWKSGSRSCSSWS EGEGDGLYRPLFSKRKHIA NLSSQDEI+NWES
Sbjct: 121 SDLKIATELPDIKTWKSGSRSCSSWS-EGEGDGLYRPLFSKRKHIAKNLSSQDEIQNWES 180

Query: 181 PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK 240
           PSAIH SKLSKGDDEQT STAKYLSAPFQDKKM KN HKVE EIQNWELPSEIEASKW+K
Sbjct: 181 PSAIHTSKLSKGDDEQTFSTAKYLSAPFQDKKMSKNSHKVESEIQNWELPSEIEASKWTK 240

Query: 241 DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED 300
           DDEN RTKSCILGKVRGASSKWSEYITEEENCGGRNEENMARE+GMD+LK MIN+EIVED
Sbjct: 241 DDENSRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREQGMDILK-MINDEIVED 300

Query: 301 DIHPDFK 308
           DIHPDFK
Sbjct: 301 DIHPDFK 305

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BLAST of CsaV3_6G004890 vs. NCBI nr
Match: XP_038885326.1 (MRN complex-interacting protein [Benincasa hispida])

HSP 1 Score: 478.8 bits (1231), Expect = 3.6e-131
Identity = 243/314 (77.39%), Postives = 270/314 (85.99%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           MATIFIAVQCFQCSTMQVKQQRKSGN+WICAVCN+KQS+QKVFARA MAKDVRKFVQ+FN
Sbjct: 1   MATIFIAVQCFQCSTMQVKQQRKSGNRWICAVCNEKQSLQKVFARASMAKDVRKFVQNFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYA+EQA  DEL+DGGIVD+DKL CS RRK R+DWS+YLDP EDRSH+GRENE ELE
Sbjct: 61  MSRKYADEQAKADELLDGGIVDEDKLDCSARRKRRNDWSEYLDPEEDRSHNGRENEGELE 120

Query: 121 S---DLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRN 180
           S   D KIVTE+P++KT KSGS SCS WS EGEGDG YRP+FSKRKHIANNLSSQDE+RN
Sbjct: 121 SESTDEKIVTEIPEVKTRKSGSTSCSRWS-EGEGDGFYRPIFSKRKHIANNLSSQDEVRN 180

Query: 181 WESPSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASK 240
           WES S I   K SKG+DEQ +S AK LSAPFQDKKM KN HK+ DEIQNWEL SEIEASK
Sbjct: 181 WESTSTIQTMKWSKGNDEQIISKAKNLSAPFQDKKMSKNSHKIADEIQNWELQSEIEASK 240

Query: 241 ----WSKDDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMI 300
                SKDDEN RTK+ IL KVRG SSKWSEYITEE+NC GRN ENMA ++ +D+LK +I
Sbjct: 241 GSKDMSKDDENSRTKTSILAKVRGPSSKWSEYITEEDNCRGRNGENMATDQCIDILKKII 300

Query: 301 NEEIVEDDIHPDFK 308
           N+EIV+DDIHPDFK
Sbjct: 301 NDEIVDDDIHPDFK 313

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BLAST of CsaV3_6G004890 vs. NCBI nr
Match: XP_022939429.1 (MRN complex-interacting protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 337.0 bits (863), Expect = 1.7e-88
Identity = 195/314 (62.10%), Postives = 221/314 (70.38%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           M+TIFIAVQCFQCSTMQVKQQR+SGNKWICAVCN+KQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MSTIFIAVQCFQCSTMQVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYA+EQ  VDE++D  IVD+D+L  + +RK RSDWS+YLD  EDRS +GRENE EL 
Sbjct: 61  MSRKYADEQTKVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELG 120

Query: 121 SDL---KIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRN 180
           SD    K VTELP+ KT K  S SCSS  E  EG   YRP+F KR HIA N         
Sbjct: 121 SDFADGKFVTELPEEKTRKHCSTSCSSRPEGVEGKRFYRPVFPKRTHIAKN--------- 180

Query: 181 WESPSAIHASKLSKG---DDEQTLSTAK-YLSAPFQDKKMGKNGHKVEDEIQNWELPSEI 240
               SAI ASK  KG   DDE+    AK +LS+              +DEI+NWE PS  
Sbjct: 181 ----SAIQASKWRKGVREDDEKVSLKAKHHLSS--------------KDEIRNWESPS-- 240

Query: 241 EASKWSKDDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMI 300
                SKDDE+    +CIL KV G SSKWSEYITE++NCGGR  ENM  E+ MD LKM+ 
Sbjct: 241 -----SKDDES----ACILAKVGGPSSKWSEYITEDDNCGGRKGENMGTEQDMDTLKMIT 276

Query: 301 NEEIVEDDIHPDFK 308
           N+EIVEDDIHPDFK
Sbjct: 301 NDEIVEDDIHPDFK 276

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BLAST of CsaV3_6G004890 vs. NCBI nr
Match: XP_023549686.1 (MRN complex-interacting protein isoform X2 [Cucurbita pepo subsp. pepo] >XP_023549687.1 MRN complex-interacting protein isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.9 bits (860), Expect = 3.7e-88
Identity = 194/316 (61.39%), Postives = 223/316 (70.57%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           M+TIFIAVQCFQCSTMQVKQQR+SGNKWICAVCN+KQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MSTIFIAVQCFQCSTMQVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYA+EQ  VDE++D  IVD+D+L  + +RK RSDWS+YLD  EDRS +GRENE EL 
Sbjct: 61  MSRKYADEQTKVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELG 120

Query: 121 SDL---KIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRN 180
           SD    KIVTELP+ KT K  S SCSS  E GEG   YRP+F KR HIA N         
Sbjct: 121 SDFTDGKIVTELPEEKTRKHCSTSCSSRPEGGEGKRFYRPVFPKRTHIAKN--------- 180

Query: 181 WESPSAIHASKLSKG--DDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEA 240
               SAI ASK  KG  +D++ +S    LS+              +DEI+NWE  S+IEA
Sbjct: 181 ----SAIQASKWRKGVREDDEKVSLKANLSS--------------KDEIRNWESQSDIEA 240

Query: 241 SKW----SKDDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKM 300
           SKW    SKDDEN    +CIL KV G S KWSEY+TEE       ++NM  E+ MD LKM
Sbjct: 241 SKWSKGMSKDDEN----ACILAKVGGPSPKWSEYMTEE-------DKNMGTEQDMDTLKM 278

Query: 301 MINEEIVEDDIHPDFK 308
           +IN+EIVEDDIHPDFK
Sbjct: 301 IINDEIVEDDIHPDFK 278

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BLAST of CsaV3_6G004890 vs. ExPASy Swiss-Prot
Match: Q32PP1 (MRN complex-interacting protein OS=Danio rerio OX=7955 GN=mrnip PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.7e-08
Identity = 73/301 (24.25%), Postives = 120/301 (39.87%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           M   F  ++CF C T QV QQ K   KW C VC +KQS+ K F R   A D R+ VQ  N
Sbjct: 1   MVQEFNVLRCFSCQTFQV-QQVKKAKKWTCKVCGEKQSLIKEFGRG-AAADCRRHVQKLN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDK----LVCSGRRKSR----SDWSDYLDPVEDRSHSG 120
             R     Q N  +L+  G  +++      V   + +      S WS Y D   +  +  
Sbjct: 61  ALRG-EQHQLNTQQLLAQGDEENENEDVYEVLDPKSEQEEAHVSRWSKYTDQTTEGPNEE 120

Query: 121 RENEVELESDLKIVTELPDIKTWKSGSR-----------SCSSWSEEGEGDGLYR----- 180
           +++E   + D  + TE P  +   +  R           +C ++ E   G   +R     
Sbjct: 121 KDDE---DEDENVYTERPQFRIQGTRKRKKMSSLEPFGGNCDNYEESRAGYSQFRKQAYL 180

Query: 181 PL-FSKRKHIANNLSSQDEIRNWESPSAIHASKLSK-GDDEQTL--------STAKYLSA 240
           PL   KR   + N  S  +  N + P  +  S  +K     QT+        S+   +  
Sbjct: 181 PLQLEKRSSSSWNKGSVSKYSNCQRPDDVVPSARTKLPSSRQTVGHYPTACSSSTNTMEN 240

Query: 241 PFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSKDDENLRTKSCILGKVRGASSKWSEYI 268
              +K+  K+ ++      N  LP + E+   S   +   +       +    SKW++++
Sbjct: 241 SIGNKQQIKSSYRPPTADVNKHLPIQSESPSVSSHQKFGES------TIENKDSKWNKFL 289

[Close]

BLAST of CsaV3_6G004890 vs. ExPASy TrEMBL
Match: A0A0A0KCJ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052770 PE=4 SV=1)

HSP 1 Score: 619.8 bits (1597), Expect = 6.2e-174
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE
Sbjct: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120

Query: 121 SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES 180
           SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES
Sbjct: 121 SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES 180

Query: 181 PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK 240
           PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK
Sbjct: 181 PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK 240

Query: 241 DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED 300
           DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED
Sbjct: 241 DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED 300

Query: 301 DIHPDFK 308
           DIHPDFK
Sbjct: 301 DIHPDFK 307

[Close]

BLAST of CsaV3_6G004890 vs. ExPASy TrEMBL
Match: A0A5D3BXL1 (UPF0544 protein C5orf45-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00830 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 2.8e-158
Identity = 283/307 (92.18%), Postives = 292/307 (95.11%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCN+KQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYANEQANVD+LI GGIVDDDKL CSGRRK R+DWS+YLDP EDRSHSGRENE ELE
Sbjct: 61  MSRKYANEQANVDDLIHGGIVDDDKLDCSGRRKRRNDWSEYLDPEEDRSHSGRENEGELE 120

Query: 121 SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES 180
           SDLKI TELPDIKTWKSGSRSCSSWS EGEGDGLYRPLFSKRKHIA NLSSQDEI+NWES
Sbjct: 121 SDLKIATELPDIKTWKSGSRSCSSWS-EGEGDGLYRPLFSKRKHIAKNLSSQDEIQNWES 180

Query: 181 PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK 240
           PSAIH SKLSKGDDEQT STAKYLSAPFQDKKM KN HKVE EIQNWELPSEIEASKW+K
Sbjct: 181 PSAIHTSKLSKGDDEQTFSTAKYLSAPFQDKKMSKNSHKVESEIQNWELPSEIEASKWTK 240

Query: 241 DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED 300
           DDEN RTKSCILGKVRGASSKWSEYITEEENCGGRNEENMARE+GMD+LK MIN+EIVED
Sbjct: 241 DDENSRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREQGMDILK-MINDEIVED 300

Query: 301 DIHPDFK 308
           DIHPDFK
Sbjct: 301 DIHPDFK 305

[Close]

BLAST of CsaV3_6G004890 vs. ExPASy TrEMBL
Match: A0A1S3C3H7 (UPF0544 protein C5orf45 homolog OS=Cucumis melo OX=3656 GN=LOC103496578 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 2.8e-158
Identity = 283/307 (92.18%), Postives = 292/307 (95.11%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCN+KQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYANEQANVD+LI GGIVDDDKL CSGRRK R+DWS+YLDP EDRSHSGRENE ELE
Sbjct: 61  MSRKYANEQANVDDLIHGGIVDDDKLDCSGRRKRRNDWSEYLDPEEDRSHSGRENEGELE 120

Query: 121 SDLKIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRNWES 180
           SDLKI TELPDIKTWKSGSRSCSSWS EGEGDGLYRPLFSKRKHIA NLSSQDEI+NWES
Sbjct: 121 SDLKIATELPDIKTWKSGSRSCSSWS-EGEGDGLYRPLFSKRKHIAKNLSSQDEIQNWES 180

Query: 181 PSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQNWELPSEIEASKWSK 240
           PSAIH SKLSKGDDEQT STAKYLSAPFQDKKM KN HKVE EIQNWELPSEIEASKW+K
Sbjct: 181 PSAIHTSKLSKGDDEQTFSTAKYLSAPFQDKKMSKNSHKVESEIQNWELPSEIEASKWTK 240

Query: 241 DDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMINEEIVED 300
           DDEN RTKSCILGKVRGASSKWSEYITEEENCGGRNEENMARE+GMD+LK MIN+EIVED
Sbjct: 241 DDENSRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREQGMDILK-MINDEIVED 300

Query: 301 DIHPDFK 308
           DIHPDFK
Sbjct: 301 DIHPDFK 305

[Close]

BLAST of CsaV3_6G004890 vs. ExPASy TrEMBL
Match: A0A6J1FH51 (MRN complex-interacting protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445345 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 8.1e-89
Identity = 195/314 (62.10%), Postives = 221/314 (70.38%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           M+TIFIAVQCFQCSTMQVKQQR+SGNKWICAVCN+KQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MSTIFIAVQCFQCSTMQVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYA+EQ  VDE++D  IVD+D+L  + +RK RSDWS+YLD  EDRS +GRENE EL 
Sbjct: 61  MSRKYADEQTKVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELG 120

Query: 121 SDL---KIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRN 180
           SD    K VTELP+ KT K  S SCSS  E  EG   YRP+F KR HIA N         
Sbjct: 121 SDFADGKFVTELPEEKTRKHCSTSCSSRPEGVEGKRFYRPVFPKRTHIAKN--------- 180

Query: 181 WESPSAIHASKLSKG---DDEQTLSTAK-YLSAPFQDKKMGKNGHKVEDEIQNWELPSEI 240
               SAI ASK  KG   DDE+    AK +LS+              +DEI+NWE PS  
Sbjct: 181 ----SAIQASKWRKGVREDDEKVSLKAKHHLSS--------------KDEIRNWESPS-- 240

Query: 241 EASKWSKDDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMI 300
                SKDDE+    +CIL KV G SSKWSEYITE++NCGGR  ENM  E+ MD LKM+ 
Sbjct: 241 -----SKDDES----ACILAKVGGPSSKWSEYITEDDNCGGRKGENMGTEQDMDTLKMIT 276

Query: 301 NEEIVEDDIHPDFK 308
           N+EIVEDDIHPDFK
Sbjct: 301 NDEIVEDDIHPDFK 276

[Close]

BLAST of CsaV3_6G004890 vs. ExPASy TrEMBL
Match: A0A6J1JWE4 (MRN complex-interacting protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488952 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 8.4e-86
Identity = 192/314 (61.15%), Postives = 218/314 (69.43%), Query Frame = 0


Query: 1   MATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFN 60
           M+TIFIAVQCFQCSTMQVKQQR+SGNKWICAVCN+KQSVQKVFARAPMAKDVRKFVQSFN
Sbjct: 1   MSTIFIAVQCFQCSTMQVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFN 60

Query: 61  MSRKYANEQANVDELIDGGIVDDDKLVCSGRRKSRSDWSDYLDPVEDRSHSGRENEVELE 120
           MSRKYA+EQ  VDE+ D  IVD+D+L  + +RK RSDWS+YLD  EDRS +GRENE EL 
Sbjct: 61  MSRKYADEQTKVDEIFDEEIVDEDQLDFNEKRKRRSDWSEYLDLEEDRSQTGRENERELG 120

Query: 121 SDL---KIVTELPDIKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIANNLSSQDEIRN 180
           SD    KIVTELP+ KT K  S SCS+  E GEG   YRP+F KR HIA N         
Sbjct: 121 SDFADGKIVTELPEEKTRKHCSTSCSNRPESGEGKIFYRPVFPKRTHIAKN--------- 180

Query: 181 WESPSAIHASKLSKG---DDEQTLSTAK-YLSAPFQDKKMGKNGHKVEDEIQNWELPSEI 240
               SAI ASK SKG   DDE+    AK +LS+              +DEI+NWE     
Sbjct: 181 ----SAIQASKWSKGVREDDEKVSLKAKHHLSS--------------KDEIRNWE----- 240

Query: 241 EASKWSKDDENLRTKSCILGKVRGASSKWSEYITEEENCGGRNEENMAREEGMDVLKMMI 300
             S  +KDDEN  +K        G  SKWSEYITE++NCGGR  ENM  E+ MD LKM+I
Sbjct: 241 --SLSTKDDENACSKV-------GGPSKWSEYITEDDNCGGRKGENMGTEQDMDTLKMII 273

Query: 301 NEEIVEDDIHPDFK 308
           N+EIVEDDIHPDFK
Sbjct: 301 NDEIVEDDIHPDFK 273

[Close]

BLAST of CsaV3_6G004890 vs. TAIR 10
Match: AT1G71760.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 84 Blast hits to 84 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-32
Identity = 108/329 (32.83%), Postives = 162/329 (49.24%), Query Frame = 0


Query: 2   ATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFNM 61
           +T+FIA+QC++CSTMQVKQ++KS NKW+C +CNQKQSV+KVFA+   AK++R FVQSFNM
Sbjct: 3   STLFIALQCYECSTMQVKQKKKSSNKWVCVICNQKQSVKKVFAQGYKAKELRFFVQSFNM 62

Query: 62  SRKYANEQANV-----DELIDGGIVDDDKLVCSGRRKSRSDWSDYL--DPVEDRSHSGRE 121
           SRK A+E+A+       E+   G V+++    +G +K RSDWS YL  D V DR     E
Sbjct: 63  SRKVADEEAHAVGDSFPEVYVEGEVNEE---VNGTKK-RSDWSQYLDFDSVNDRRRLAGE 122

Query: 122 NEVELESDLKIVTELPD--------IKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIA 181
                E D+KIVTE+P          K   +G  S ++  E  + + +++P FS+R    
Sbjct: 123 -----EDDVKIVTEMPSNMFKRPKLNKESNAGGSSSNTGGENKDSNEIFKPSFSRRS--- 182

Query: 182 NNLSSQDEIRNWESPSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGHKVEDEIQN 241
                + + R+ +  SA +   +S                                    
Sbjct: 183 ---IKKPDFRSGKRSSATYVGHISAFSS-------------------------------- 242

Query: 242 WELPSEIEASKWSKDDENLRTKSCILGKVRGASSKWSEYITEEE-------NCGGRNEEN 301
               +E+   K   ++ NL ++     +V   +SKW  Y+ ++E         G +    
Sbjct: 243 ----NEVVTRKKDMEERNLESE-----RVTKPASKWDAYLIDDEGEHQAPPRFGVKKALK 275

Query: 302 MAREEGMDVLKMMINEE--IVEDDIHPDF 307
                G D   M IN E  IV+D++HPDF
Sbjct: 303 DDEVGGWDRAVMEINTEYQIVDDEVHPDF 275

[Close]

BLAST of CsaV3_6G004890 vs. TAIR 10
Match: AT1G71760.1 (unknown protein; Has 92 Blast hits to 92 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 44; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-30
Identity = 99/266 (37.22%), Postives = 141/266 (53.01%), Query Frame = 0


Query: 2   ATIFIAVQCFQCSTMQVKQQRKSGNKWICAVCNQKQSVQKVFARAPMAKDVRKFVQSFNM 61
           +T+FIA+QC++CSTMQVKQ++KS NKW+C +CNQKQSV+KVFA+   AK++R FVQSFNM
Sbjct: 3   STLFIALQCYECSTMQVKQKKKSSNKWVCVICNQKQSVKKVFAQGYKAKELRFFVQSFNM 62

Query: 62  SRKYANEQANV-----DELIDGGIVDDDKLVCSGRRKSRSDWSDYL--DPVEDRSHSGRE 121
           SRK A+E+A+       E+   G V+++    +G +K RSDWS YL  D V DR     E
Sbjct: 63  SRKVADEEAHAVGDSFPEVYVEGEVNEE---VNGTKK-RSDWSQYLDFDSVNDRRRLAGE 122

Query: 122 NEVELESDLKIVTELPD--------IKTWKSGSRSCSSWSEEGEGDGLYRPLFSKRKHIA 181
                E D+KIVTE+P          K   +G  S ++  E  + + +++P FS+R    
Sbjct: 123 -----EDDVKIVTEMPSNMFKRPKLNKESNAGGSSSNTGGENKDSNEIFKPSFSRRSIKK 182

Query: 182 NNLSSQD--------EIRNWESPSAIHASKLSKGDDEQTLSTAKYLSAPFQDKKMGKNGH 241
            +  S +        E RN ES         SK D        ++ + P    + G    
Sbjct: 183 PDFRSDEVVTRKKDMEERNLESERV--TKPASKWDAYLIDDEGEHQAPP----RFGVKKA 242

Query: 242 KVEDEIQNWE-LPSEIEASKWSKDDE 244
             +DE+  W+    EI       DDE
Sbjct: 243 LKDDEVGGWDRAVMEINTEYQIVDDE 253

The following BLAST results are available for this feature:

BLAST of CsaV3_6G004890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141004.1	1.3e-173	100.00	MRN complex-interacting protein [Cucumis sativus] >KGN46102.1 hypothetical prote...	[more]
XP_008456719.1	5.8e-158	92.18	PREDICTED: UPF0544 protein C5orf45 homolog [Cucumis melo] >KAA0031637.1 UPF0544 ...	[more]
XP_038885326.1	3.6e-131	77.39	MRN complex-interacting protein [Benincasa hispida]	[more]
XP_022939429.1	1.7e-88	62.10	MRN complex-interacting protein isoform X1 [Cucurbita moschata]	[more]
XP_023549686.1	3.7e-88	61.39	MRN complex-interacting protein isoform X2 [Cucurbita pepo subsp. pepo] >XP_0235...	[more]

BLAST of CsaV3_6G004890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q32PP1	6.7e-08	24.25	MRN complex-interacting protein OS=Danio rerio OX=7955 GN=mrnip PE=2 SV=1	[more]

BLAST of CsaV3_6G004890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCJ3	6.2e-174	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052770 PE=4 SV=1	[more]
A0A5D3BXL1	2.8e-158	92.18	UPF0544 protein C5orf45-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C3H7	2.8e-158	92.18	UPF0544 protein C5orf45 homolog OS=Cucumis melo OX=3656 GN=LOC103496578 PE=4 SV=...	[more]
A0A6J1FH51	8.1e-89	62.10	MRN complex-interacting protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JWE4	8.4e-86	61.15	MRN complex-interacting protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CsaV3_6G004890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71760.2	1.4e-32	32.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G71760.1	1.3e-30	37.22	unknown protein; Has 92 Blast hits to 92 proteins in 41 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032739	MRN complex-interacting protein	PFAM	PF15749	MRNIP	coord: 8..73 e-value: 2.3E-16 score: 60.4
IPR032739	MRN complex-interacting protein	PANTHER	PTHR15863	MRN COMPLEX-INTERACTING PROTEIN	coord: 1..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G004890.1	CsaV3_6G004890.1	mRNA