CsaV3_6G004660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G004660
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionLEA_2 domain-containing protein
Locationchr6: 3966040 .. 3967201 (-)
RNA-Seq ExpressionCsaV3_6G004660
SyntenyCsaV3_6G004660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTCGATCTTATCTGCTCTAATGACAGATATGGTTCTTGCAAAATATATCCACTGTCAATTGCCAGTTTTCCCGTGCCTAATAGTGATCTTGAGGTATAAAAGTAAAATCAATTTGGCACAGAAAGTGTCTTGAATAGTTTTGAAACGTATGTAGTGTAGAATGGCTTAGGCCCGTGCAGTTATGTAATATCTGTTTGAATTGCCATTGCTATTTTCATATTATTATGCTAATTTTCTCTTCTTCTTCATATAATATCATCAATTTCTGAAATCCTGCTATAGTTGTTTGCTCTATGATGGGATGCTCTGCCATTCGTTTCTTTGTTCAAGGATTTATTATCATGGTTATTATTTGGCTGCCTGATAATTTCCAGCCAAGTAATCTCAAACTTTACCTTTTGGCTAAATGGATATGCTTGTTGGGGTGAAATTGAACACATAGATGTTTGTTATATCCCCCTGTCATAAACTTTACTGGCTCATTCTCTTATTCTGGTTTGTTTTTCTGAGACATTCAATTGCATATTCTCAACTTGAAGGTGGGGAGCAGGATAAACCAGATTTCATTACAAGTAGAATATAACAATGGAAATGTTATCGCATACAATTAAACTACCCCAACATCTCACTTCATGTGCTTGAAAATTTGTTGTCTCAGTTACTCTCTTAGACAGAATGATCCCAGTACAAGGAAATAACCCTAATGAAATCAACGGAAACTGTAGTCTCAGTCTTCATTATATCCATAGTCATCTCAGTGCTAAGTGCTAACTAAATCATTAATTGCTTTGTTTTTTGCTGCATATTCCTCCAGATTGAAGTTTATGCTCAATTGGAGGGTACGCGATAATATTTTCCTTTACACATGCATCTGTAGACGGTTGGACAAGACTCTGCAACAGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCGCATGCATGGGAGCAGTCTGGGAGGCTGGATCCTGTAGGGTATAACTCCATACCAAGTACTTCTTTAGTTTTTTCCTGCACAGGCACACATGACGAAGAAACTGATTATGTTAGTATTGTTTGTCTTGTTCAAGGAGCATCTGTTCAGATTTTTCCTATTCTTCTACCCGACAGGCGAACTTTTGTTATCTTCATGCATAATGTTTAA

mRNA sequence

ATGGATTTCGATCTTATCTGCTCTAATGACAGATATGGTTCTTGCAAAATATATCCACTGTCAATTGCCAGTTTTCCCGTGCCTAATAGTGATCTTGAGACGGTTGGACAAGACTCTGCAACAGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCGCATGCATGGGAGCAGTCTGGGAGGCTGGATCCTGTAGGGTATAACTCCATACCAAGTACTTCTTTAGTTTTTTCCTGCACAGGCACACATGACGAAGAAACTGATTATGTTAGTATTGTTTGTCTTGTTCAAGGAGCATCTGTTCAGATTTTTCCTATTCTTCTACCCGACAGGCGAACTTTTGTTATCTTCATGCATAATGTTTAA

Coding sequence (CDS)

ATGGATTTCGATCTTATCTGCTCTAATGACAGATATGGTTCTTGCAAAATATATCCACTGTCAATTGCCAGTTTTCCCGTGCCTAATAGTGATCTTGAGACGGTTGGACAAGACTCTGCAACAGAGCATTTGAAGCTCACCATCACCCTTTTGCACGGAAAACATGGTCCGCATGCATGGGAGCAGTCTGGGAGGCTGGATCCTGTAGGGTATAACTCCATACCAAGTACTTCTTTAGTTTTTTCCTGCACAGGCACACATGACGAAGAAACTGATTATGTTAGTATTGTTTGTCTTGTTCAAGGAGCATCTGTTCAGATTTTTCCTATTCTTCTACCCGACAGGCGAACTTTTGTTATCTTCATGCATAATGTTTAA

Protein sequence

MDFDLICSNDRYGSCKIYPLSIASFPVPNSDLETVGQDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGYNSIPSTSLVFSCTGTHDEETDYVSIVCLVQGASVQIFPILLPDRRTFVIFMHNV*
Homology
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BLAST of CsaV3_6G004660 vs. NCBI nr
Match: KAE8646651.1 (hypothetical protein Csa_005292 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 1.9e-67
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0 

Query: 1   MDFDLICSNDRYGSCKIYPLSIASFPVPNSDLETVGQDSATEHLKLTITLLHGKHGPHAW 60
           MDFDLICSNDRYGSCKIYPLSIASFPVPNSDLETVGQDSATEHLKLTITLLHGKHGPHAW
Sbjct: 1   MDFDLICSNDRYGSCKIYPLSIASFPVPNSDLETVGQDSATEHLKLTITLLHGKHGPHAW 60

Query: 61  EQSGRLDPVGYNSIPSTSLVFSCTGTHDEETDYVSIVCLVQGASVQIFPILLPDRRTFVI 120
           EQSGRLDPVGYNSIPSTSLVFSCTGTHDEETDYVSIVCLVQGASVQIFPILLPDRRTFVI
Sbjct: 61  EQSGRLDPVGYNSIPSTSLVFSCTGTHDEETDYVSIVCLVQGASVQIFPILLPDRRTFVI 120

Query: 121 FMHNV 126
           FMHNV
Sbjct: 121 FMHNV 125

[Close]
BLAST of CsaV3_6G004660 vs. NCBI nr
Match: KAG7032905.1 (hypothetical protein SDJN02_06955, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-24
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 34 TVGQDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGYNSIPSTSLVFSCTGTHDEETD 93
          TVG DSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGYNSIPSTSL FSCTGTHD+ET+
Sbjct: 23 TVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGYNSIPSTSLAFSCTGTHDKETE 81

[Close]
BLAST of CsaV3_6G004660 vs. NCBI nr
Match: KAG6602224.1 (Protein phosphatase 1 regulatory subunit INH3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0 

Query: 32  LETVGQDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG 71
           ++TVG DSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG
Sbjct: 122 VQTVGHDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVG 160

[Close]
BLAST of CsaV3_6G004660 vs. ExPASy TrEMBL
Match: A0A484M3V8 (LEA_2 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25025 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.5e-04
Identity = 27/46 (58.70%), Postives = 29/46 (63.04%), Query Frame = 0 

Query: 35 VGQDSATEHLKLTITLLHGKHGPHAWEQSGRLDPVGYNSIPSTSLV 81
          V   S  EH KLTIT LHG+H PHA+EQSG LDP      P TS V
Sbjct: 4  VSASSRLEHTKLTITSLHGRHDPHAFEQSGSLDPA-----PPTSSV 44

The following BLAST results are available for this feature:
BLAST of CsaV3_6G004660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646651.11.9e-67100.00hypothetical protein Csa_005292 [Cucumis sativus][more]
KAG7032905.11.2e-2493.22hypothetical protein SDJN02_06955, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6602224.11.8e-1292.31Protein phosphatase 1 regulatory subunit INH3, partial [Cucurbita argyrosperma s... [more]
BLAST of CsaV3_6G004660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G004660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A484M3V89.5e-0458.70LEA_2 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS250... [more]
BLAST of CsaV3_6G004660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G004660.1CsaV3_6G004660.1mRNA