CsaV3_6G003640 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTGACATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAACTAAACAATGGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTCCACCCATTGAGAATGCGATAAGAAGACAAGACCTGATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCGTAG ATGCCTGACATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAACTAAACAATGGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTCCACCCATTGAGAATGCGATAAGAAGACAAGACCTGATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCGTAG ATGCCTGACATATCGTTAGACAAACTGCATTTAGCACTATTTCCGCTCATATTACACAATGAAACTAAACAATGGGCCAATGCTTTGGAAGAAGAAGAAGCAACAACATCGGACAACTTGATTGAAAAATTTATGAAGAAATTCTTTCCACCCATTGAGAATGCGATAAGAAGACAAGACCTGATGACCTTCGAACAGAGCAATAGCGAGAACTTGATAGACGCGTAG MPDISLDKLHLALFPLILHNETKQWANALEEEEATTSDNLIEKFMKKFFPPIENAIRRQDLMTFEQSNSENLIDA* Homology
BLAST of CsaV3_6G003640 vs. NCBI nr
Match: KGN45973.1 (hypothetical protein Csa_005655 [Cucumis sativus]) HSP 1 Score: 153.3 bits (386), Expect = 8.4e-34 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. NCBI nr
Match: XP_038880527.1 (uncharacterized protein LOC120072192 [Benincasa hispida]) HSP 1 Score: 80.1 bits (196), Expect = 9.1e-12 Identity = 36/72 (50.00%), Postives = 53/72 (73.61%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. NCBI nr
Match: WP_217833228.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 75.1 bits (183), Expect = 2.9e-10 Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. NCBI nr
Match: XP_038904327.1 (uncharacterized protein LOC120090680 [Benincasa hispida]) HSP 1 Score: 73.6 bits (179), Expect = 8.5e-10 Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. ExPASy TrEMBL
Match: A0A0A0K974 (Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G040620 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 4.1e-34 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. ExPASy TrEMBL
Match: A0A5D3E4P5 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1985G00070 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.0e-08 Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. ExPASy TrEMBL
Match: A0A5A7V1F3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002850 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.3e-08 Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. ExPASy TrEMBL
Match: A0A392NID4 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0020009 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08 Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 0
BLAST of CsaV3_6G003640 vs. ExPASy TrEMBL
Match: A0A5B6UZH7 (Retrotransposon gag protein OS=Gossypium australe OX=47621 GN=EPI10_027113 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07 Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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