CsaV3_6G003470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G003470
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 2768053 .. 2768322 (-)
RNA-Seq ExpressionCsaV3_6G003470
SyntenyCsaV3_6G003470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTTCCTCTCCACCTCCGTCTTCTCAAATCTCCTCCTCTTCGTCATTTGTCTTATCTGATCTCTCTTTTTGTCGGCCGTTCGTCTTCTCAGATCTTCTTCTTCTACGTCATTTGTCTTCTCAGATCTCTTCCCCTCTCCAACGTCCGTCCTTCATCTACTGTCTTTGACATTCGACTCTTATCTACTATCTACATCGTCCGGCTCTTCGTTCGTCCCTCATCTTCTATCTTCACTGTCTGTTTCCTCTCTTTTCTTTTCATCTAA

mRNA sequence

ATGTCTCTTCCTCTCCACCTCCGTCTTCTCAAATCTCCTCCTCTTCGTCATTTGTCTTATCTGATCTCTCTTTTTGTCGGCCGTTCGTCTTCTCAGATCTTCTTCTTCTACGTCATTTGTCTTCTCAGATCTCTTCCCCTCTCCAACGTCCGTCCTTCATCTACTGTCTTTGACATTCGACTCTTATCTACTATCTACATCGTCCGGCTCTTCGTTCGTCCCTCATCTTCTATCTTCACTGTCTGTTTCCTCTCTTTTCTTTTCATCTAA

Coding sequence (CDS)

ATGTCTCTTCCTCTCCACCTCCGTCTTCTCAAATCTCCTCCTCTTCGTCATTTGTCTTATCTGATCTCTCTTTTTGTCGGCCGTTCGTCTTCTCAGATCTTCTTCTTCTACGTCATTTGTCTTCTCAGATCTCTTCCCCTCTCCAACGTCCGTCCTTCATCTACTGTCTTTGACATTCGACTCTTATCTACTATCTACATCGTCCGGCTCTTCGTTCGTCCCTCATCTTCTATCTTCACTGTCTGTTTCCTCTCTTTTCTTTTCATCTAA

Protein sequence

MSLPLHLRLLKSPPLRHLSYLISLFVGRSSSQIFFFYVICLLRSLPLSNVRPSSTVFDIRLLSTIYIVRLFVRPSSSIFTVCFLSFLFI*
Homology
[Close]
BLAST of CsaV3_6G003470 vs. NCBI nr
Match: KGN45957.1 (hypothetical protein Csa_004973 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MSLPLHLRLLKSPPLRHLSYLISLFVGRSSSQIFFFYVICLLRSLPLSNVRPSSTVFDIR 60
          MSLPLHLRLLKSPPLRHLSYLISLFVGRSSSQIFFFYVICLLRSLPLSNVRPSSTVFDIR
Sbjct: 1  MSLPLHLRLLKSPPLRHLSYLISLFVGRSSSQIFFFYVICLLRSLPLSNVRPSSTVFDIR 60

Query: 61 LLSTIYIVRLFVRPSSSIFTVCFLSFLFI 90
          LLSTIYIVRLFVRPSSSIFTVCFLSFLFI
Sbjct: 61 LLSTIYIVRLFVRPSSSIFTVCFLSFLFI 89

[Close]
BLAST of CsaV3_6G003470 vs. ExPASy TrEMBL
Match: A0A0A0KC67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038770 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.2e-38
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MSLPLHLRLLKSPPLRHLSYLISLFVGRSSSQIFFFYVICLLRSLPLSNVRPSSTVFDIR 60
          MSLPLHLRLLKSPPLRHLSYLISLFVGRSSSQIFFFYVICLLRSLPLSNVRPSSTVFDIR
Sbjct: 1  MSLPLHLRLLKSPPLRHLSYLISLFVGRSSSQIFFFYVICLLRSLPLSNVRPSSTVFDIR 60

Query: 61 LLSTIYIVRLFVRPSSSIFTVCFLSFLFI 90
          LLSTIYIVRLFVRPSSSIFTVCFLSFLFI
Sbjct: 61 LLSTIYIVRLFVRPSSSIFTVCFLSFLFI 89

The following BLAST results are available for this feature:
BLAST of CsaV3_6G003470 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45957.11.5e-37100.00hypothetical protein Csa_004973 [Cucumis sativus][more]
BLAST of CsaV3_6G003470 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G003470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC677.2e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038770 PE=4 SV=1[more]
BLAST of CsaV3_6G003470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G003470.1CsaV3_6G003470.1mRNA