CsaV3_6G003460 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G003460
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 2715283 .. 2717205 (-)
RNA-Seq Expression	CsaV3_6G003460
Synteny	CsaV3_6G003460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTACCAATGTCAAATTACCATAAAAAGAAGAGATAAGAGCAGGAAATTTAAATTTCATCATCTTTTTCTTTCATTTTTTCTCTCTATGACTTAACACTTTCCATTCTCTCTATCTTTTTCTTTCTCTTACTTTCACTCTTTTTAACTCTTTCGCATTGGTTTATCTCATAAGAAAATTGTCCCTCCAATTCAGGTTTATAGATTAGAACAAAAGGAAAAAGAATTGACAGAAGCACTAAGGAGACTTTAAAACTTCTGTTTTAACTTAGTTGTATGTAATAACTGAGTGTATTTTAATAGTTTGAAGTTTGAACCAAATACTTTAATATTAAAAGGACCCTAAACTTCTTTTTCTCTTTGAAAATTAAGCCCTACAAATCAAAAATTAATTCATTAGTTTCTAAAATTTGTTGGCTACATTTAGAAGTGTTTTTAAATCCAACCCAAAATTTGGAAGCTAAAAAAATAGTTTTTGGTTATAAAATTTGTCTAACATGCATCTCATTGTGTTGGGTTTGTTTCTAATTTGATTTTAGGCCCAATCTTAAGTGCTAGACAATTTGTGTAAAGCTTGGATAGGAGTATAATCGGGTTGGCTTGGGTTGGATTGAGAGACATTCTCAAGCCAACCCATATTTTGAGTTATTTTGGTTCACAACCCGAATTAAGTTTTCAACCCAACCCGTGAAATATGGGATGAGTTGGGTTGGGTTGACAAGTTTTTTTTTTTTTTAGAGATGTGAGATCGAAAACGGATAGATCTGAGATCAGAGACGAAGAGATCTGAGATCGGAAACATAGAGATCTAAGATTGGAGACAGATCAATTTTATGTTTGACTAGGACGGAGGAGATCAGAGATGTCTAAGATTGGAGATATCAGAGACGGAGGAGATGTCGAAGGAGACGAAGGAGATCGGAGGAGACAGAGGAACTAAGATCTAAGATCAGCCTGACGGAGGACATGAAGGAGGAGAGACGAAGGCAATGTCAGAGGAGAGACAAAGAAGACGAAGGAGGAGAGAGGGAGCTGAGACGAAGGAGACGTCGGAGATGTTGTGGTGCGAAAGGGAAAGCCGACGGTGAATTACGTGACGGCGTGAGAATTGAGGAAAAGATTTTCGCATGAATCGCGTGGGAGAAAACTTGATCTAATCTCCTTTTATTATTATTATTATTATGTATTATATTAATTCAGGTTGGGTTGGCTTGAATCAAAATTTTCAACCTCCAACCCGACAACCAACCCAACCCGAAAAAATCCTATTCTTTTTAACCCAACCCAACCCAACCCACATTTTAACATAACCCAACCCAATTTTTACAATATGGGTTGAGTAGTCCGGGTTATTCGGGTTCAACCCATATTTTTACACCCCTAAGCTTGGAGGAGAAGATGTCACGTCTCTTGTGATGACAGTAGTACACGTGTATGAAGGTAAGGATTTCCCTTTATTTCTGCACGTTAAGAAAGATAAGAAAAACAAGGAAAGAAAGGAAAAATGAAATGAATTTACCTTTTCTTTACTCTTCGTTTTCTTTGTTCTCTACATTTACAAACCCTAAAGTTTTCTTTATGGTGTGGTTTGGTTTTAATGGAGTAGATCACACACACCACAAATGAAGATGAAGGAGAAGAATAAAGAGACTACAAGATTTACATGGTTGGGGCAATGAAAGCCTACATCCACGGAAAGGATCTCTTTCTTTGATGTTTGAAGATAAGGACAATAGTTTTGCTTCTCTTTTTCTTTTTTCTATATCTACTTGTAAAAGTGAGTGTATGTAAAACTTATATTATTTTTTTAATACACCTTTATATTTATAGTTGTTTTCAGAGATAAGAAAGTTAACAGAAAATTGAAAACCAATGTTGTTTGAATTCAGTTTCTACACATTGAAGTACAATTGTACTTAAAAAT

mRNA sequence

ATGAAGGAGGAGAGACGAAGGCAATGTCAGAGGAGAGACAAAGAAGACGAAGGAGGAGAGAGGGAGCTGAGACGAAGGAGACGTCGGAGATGTTGTGGTGCGAAAGGGAAAGCCGACGGTGAATTACGTGACGGCGTGAGAATTGAGGAAAAGATTTTCGCATGA

Coding sequence (CDS)

ATGAAGGAGGAGAGACGAAGGCAATGTCAGAGGAGAGACAAAGAAGACGAAGGAGGAGAGAGGGAGCTGAGACGAAGGAGACGTCGGAGATGTTGTGGTGCGAAAGGGAAAGCCGACGGTGAATTACGTGACGGCGTGAGAATTGAGGAAAAGATTTTCGCATGA

Protein sequence

MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRIEEKIFA*

Homology

[Close]

BLAST of CsaV3_6G003460 vs. NCBI nr
Match: KGN45956.1 (hypothetical protein Csa_005118 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRIEEKIFA 55
          MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRIEEKIFA
Sbjct: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRIEEKIFA 54

[Close]

BLAST of CsaV3_6G003460 vs. NCBI nr
Match: KAE8652272.1 (hypothetical protein Csa_023982, partial [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-04
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRI 49
          + EER+R+C RRD +DEGG RELRRR+ RR C  +GKA GEL D VRI
Sbjct: 26 LTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRI 73

[Close]

BLAST of CsaV3_6G003460 vs. ExPASy TrEMBL
Match: A0A0A0KDV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.8e-19
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRIEEKIFA 55
          MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRIEEKIFA
Sbjct: 1  MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRIEEKIFA 54

The following BLAST results are available for this feature:

BLAST of CsaV3_6G003460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45956.1	1.6e-18	100.00	hypothetical protein Csa_005118 [Cucumis sativus]	[more]
KAE8652272.1	6.6e-04	64.58	hypothetical protein Csa_023982, partial [Cucumis sativus]	[more]

BLAST of CsaV3_6G003460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G003460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV4	7.8e-19	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1	[more]

BLAST of CsaV3_6G003460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G003460.1	CsaV3_6G003460.1	mRNA