CsaV3_6G003350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G003350
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 2589795 .. 2590040 (-)
RNA-Seq ExpressionCsaV3_6G003350
SyntenyCsaV3_6G003350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACGAAAGCGGAACAAAACCCTCAGTTGGAATATGGAAAGTCGTGGCGGTGTGGAACGGCTGCGGACGTCACGACGGCACAAAACGTGAGGCAGAAGACTTGTGCAAGCTGAGCAACGCAAATTTCCGAGCAATGCGACTAGCAGAAGATGACGGACAGTGTGATGAAGTGGCTCGAACGATTGCGGATCTGGACAGGAGGGAGGCGCTGACGAACCGCGACGAGCAGTTGGGGGTTTGG

mRNA sequence

ATGGTTGACGAAAGCGGAACAAAACCCTCAGTTGGAATATGGAAAGTCGTGGCGGTGTGGAACGGCTGCGGACGTCACGACGGCACAAAACGTGAGGCAGAAGACTTGTGCAAGCTGAGCAACGCAAATTTCCGAGCAATGCGACTAGCAGAAGATGACGGACAGTGTGATGAAGTGGCTCGAACGATTGCGGATCTGGACAGGAGGGAGGCGCTGACGAACCGCGACGAGCAGTTGGGGGTTTGG

Coding sequence (CDS)

ATGGTTGACGAAAGCGGAACAAAACCCTCAGTTGGAATATGGAAAGTCGTGGCGGTGTGGAACGGCTGCGGACGTCACGACGGCACAAAACGTGAGGCAGAAGACTTGTGCAAGCTGAGCAACGCAAATTTCCGAGCAATGCGACTAGCAGAAGATGACGGACAGTGTGATGAAGTGGCTCGAACGATTGCGGATCTGGACAGGAGGGAGGCGCTGACGAACCGCGACGAGCAGTTGGGGGTTTGG

Protein sequence

MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVARTIADLDRREALTNRDEQLGVW
Homology
BLAST of CsaV3_6G003350 vs. NCBI nr
Match: KAE8646609.1 (hypothetical protein Csa_005265, partial [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVA 60
          MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVA
Sbjct: 1  MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVA 60

Query: 61 RTIADLDRREALTNRDEQLGVW 83
          RTIADLDRREALTNRDEQLGVW
Sbjct: 61 RTIADLDRREALTNRDEQLGVW 82

BLAST of CsaV3_6G003350 vs. NCBI nr
Match: KAE8650606.1 (hypothetical protein Csa_011444 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVA 60
          MVDESGTKPSVGIWKVVAVWNGC RHDGTKREAEDLCKLSNANFRA+RLAEDDGQC EVA
Sbjct: 1  MVDESGTKPSVGIWKVVAVWNGCRRHDGTKREAEDLCKLSNANFRAVRLAEDDGQCVEVA 60

Query: 61 RTIADLDRREALTNRDEQLGVW 83
          R IADLD REALTNRDEQLGVW
Sbjct: 61 RAIADLDSREALTNRDEQLGVW 82

BLAST of CsaV3_6G003350 vs. NCBI nr
Match: KAE8645914.1 (hypothetical protein Csa_011890 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVA 60
          MVDESGTKPSVGIWKVVAVW GC RHDGTKREAEDLCKLSNA+F+A+RLAEDDGQCDEVA
Sbjct: 1  MVDESGTKPSVGIWKVVAVWYGCERHDGTKREAEDLCKLSNADFQAVRLAEDDGQCDEVA 60

Query: 61 RTIADLDRREALTNRDEQLGVW 83
          R +ADLD REALTNRDEQLGVW
Sbjct: 61 RVVADLDSREALTNRDEQLGVW 82

BLAST of CsaV3_6G003350 vs. NCBI nr
Match: KAE8648141.1 (hypothetical protein Csa_018336 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1  MVDESGTKPSVGIWKVVAVWNGCGRHDGTKREAEDLCKLSNANFRAMRLAEDDGQCDEVA 60
          MVDESGTKP VGIWKVVAVWNGC RHD TKREAEDLCKLSNA+FRA++LAEDDGQCDEVA
Sbjct: 1  MVDESGTKPLVGIWKVVAVWNGCERHDDTKREAEDLCKLSNADFRAVQLAEDDGQCDEVA 60

Query: 61 RTIADLDRREALTNRDEQLGVW 83
          R +ADLD REALTN DEQLGVW
Sbjct: 61 RVVADLDSREALTNHDEQLGVW 82

BLAST of CsaV3_6G003350 vs. NCBI nr
Match: KAE8646608.1 (hypothetical protein Csa_005706 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 6.8e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0

Query: 30 KREAEDLCKLSNANFRAMRLAEDDGQCDEVARTIADLDRREALTNRDEQLGVW 83
          KREAEDLCKLSNANFRAMRLAEDDGQCDEVARTIADLDRREALTNRDEQLGVW
Sbjct: 20 KREAEDLCKLSNANFRAMRLAEDDGQCDEVARTIADLDRREALTNRDEQLGVW 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646609.12.2e-40100.00hypothetical protein Csa_005265, partial [Cucumis sativus][more]
KAE8650606.11.1e-3693.90hypothetical protein Csa_011444 [Cucumis sativus][more]
KAE8645914.11.3e-3590.24hypothetical protein Csa_011890 [Cucumis sativus][more]
KAE8648141.11.8e-3487.80hypothetical protein Csa_018336 [Cucumis sativus][more]
KAE8646608.16.8e-21100.00hypothetical protein Csa_005706 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G003350.1CsaV3_6G003350.1mRNA