CsaV3_6G003060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G003060
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 2233525 .. 2234249 (+)
RNA-Seq ExpressionCsaV3_6G003060
SyntenyCsaV3_6G003060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTACTCACTAGAGTTCGGACGGAGAACTAGTGGGCGGCTGGGCTTGCTCGAATTGAAGACGTGCAACTAAGGGTGTACAAATATGGGCTGAAGCCGCATAACCCGGACTACCCAACCCATATTATAAGGGTTGGGTTGGGTTAATTTTTTTTATAATTTTTCGGGTTGGGTTGGGTCTCGAGTTGGAGGGTTGAAAAATTCGGTTCAACCCAACCCAACCCGAATTAAGATAATATATAAATAAACAAATAAGAGGTATATATTGTTTTAATAAAAACAAATTAGAGGTATATAAATTTTGAATTTATTGTATGAAAGTTTGAATCATGTATGTTTGAAATTTAAATGTAACAATTTCAAACTTTTATAACCATTAGAAACTAGAAAATGAGAAATTTTTTTAAAAAAATATTAATATATACAACCCGACAACCCAACCTAACCCATATTTTATGAGTTGGATTGGGTTAAAAACTTAATTCGTGTTATTCGAGTTGTCAACCCAAATAACTCGAAAATATGGGTTGGGTCGAGAATGTCTCCTTACCCAACCCGATTTCACCCCTACGTGCAACACACACAACAAGCTTCGGATGGGTTTCGACTAGGCTTCGTTGAAGCGTGGGCGCTTACAGCAAGGAGGATGTGACAGACGAAGATGTCGGAGAAAGTGGGGCAATAGCGTTTAGGGAGGAAGAAGATGAAGAAGATGATGAATAG

mRNA sequence

ATGAAGTACTCACTAGAGTTCGGACGGAGAACTAGTGGGCGGCTGGGCTTGCTCGAATTGAAGACCGTGGGCGCTTACAGCAAGGAGGATGTGACAGACGAAGATGTCGGAGAAAGTGGGGCAATAGCGTTTAGGGAGGAAGAAGATGAAGAAGATGATGAATAG

Coding sequence (CDS)

ATGAAGTACTCACTAGAGTTCGGACGGAGAACTAGTGGGCGGCTGGGCTTGCTCGAATTGAAGACCGTGGGCGCTTACAGCAAGGAGGATGTGACAGACGAAGATGTCGGAGAAAGTGGGGCAATAGCGTTTAGGGAGGAAGAAGATGAAGAAGATGATGAATAG

Protein sequence

MKYSLEFGRRTSGRLGLLELKTVGAYSKEDVTDEDVGESGAIAFREEEDEEDDE*
Homology
[Close]
BLAST of CsaV3_6G003060 vs. NCBI nr
Match: KGN45915.1 (hypothetical protein Csa_005278 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 9.5e-19
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MKYSLEFGRRTSGRLGLLELKTVGAYSKEDVTDEDVGESGAIAFREEEDEEDDE 55
          MKYSLEFGRRTSGRLGLLELKTVGAYSKEDVTDEDVGESGAIAFREEEDEEDDE
Sbjct: 1  MKYSLEFGRRTSGRLGLLELKTVGAYSKEDVTDEDVGESGAIAFREEEDEEDDE 54

[Close]
BLAST of CsaV3_6G003060 vs. ExPASy TrEMBL
Match: A0A0A0K825 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022270 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.6e-19
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0 

Query: 1  MKYSLEFGRRTSGRLGLLELKTVGAYSKEDVTDEDVGESGAIAFREEEDEEDDE 55
          MKYSLEFGRRTSGRLGLLELKTVGAYSKEDVTDEDVGESGAIAFREEEDEEDDE
Sbjct: 1  MKYSLEFGRRTSGRLGLLELKTVGAYSKEDVTDEDVGESGAIAFREEEDEEDDE 54

The following BLAST results are available for this feature:
BLAST of CsaV3_6G003060 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45915.19.5e-19100.00hypothetical protein Csa_005278 [Cucumis sativus][more]
BLAST of CsaV3_6G003060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G003060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8254.6e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022270 PE=4 SV=1[more]
BLAST of CsaV3_6G003060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G003060.1CsaV3_6G003060.1mRNA