CsaV3_6G002930 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G002930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 2143778 .. 2146002 (-)
RNA-Seq Expression	CsaV3_6G002930
Synteny	CsaV3_6G002930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAGTATACCTCTTTGTAATTTGCACTCTGAATTCCTATATTGTCTGTCAGTGTTTTGTGTATTCATATTTAAAGCCTATTTAAGAGACGATGCACAGAGATAGAGACGTACTCTTGTCGGCAAAAAGAAAAAGAAACGAAAATTCAAGGCAAGATTTCAAAACTTACCCAAGAAAAATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGTAAGCCTATCTCTCTCGACTCTCTCCCTCTTTTTATGTTATTTTATTTTAATTTAACTCTTCCAAATACTGAACATTAAGTTTTAAGTGTATAACTTATAGAACCCTGCGGATGAAATTGAAATGATATACAAATTAAATTTTCAAGAGCAACGTGCTGACAATATAAAACAGAAACAGGGTTTACATTAATTGGACCATTTTTGACGAACTTTTCTGTACAATAACTTCAATTTTAAAGATTGTGTTGCGTTTTTCTGTAGGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAATATGTATATTGTAATAATCAGGTGTGGCTGGTTTGTATGATCTAAAGTAATCTAAAGCTTGAGATCTTTGTAGCTATGGTTACATGAATTAGAGTGTATGAAGTAGCAGAAAGAAAAGAAATTCCAAGCTTCCTAGTTATTTAATTTAGTGATTGTATTATAAATTTATTCTTTGATTTTTTTATTATTTTTCTTAGCATTATTTGAATTAATTATAGGTCAGAGTAAATATCACAGTTTTTAAATAAATTGTTTTAAAAAAAATATTTCCAAATATTACAAAAAAAAATAGATTATCATTTGTGGTCTATCCCAACCTAAATAAATAGTGACATTTTGGGTTGTAAATATTTTAATTCATTTTTTAATATTTGGAAAATAGTTAAATATTTCGAAATTGACTGTGTATTATAAAAAATATTTTGAAATTGACTGTGTATTATAAAAAATAGTAAATTTGACAAAATATTTATAACATATAATAAAATTTTTAATTTTTATCAATAATAGACTTGCTTATCAGTGATATTGATAGCTACTGATAAAAGCTTATTAGTTTGTATTTTTGATAGAATATAAAATTTTAGTTTGTATCTTTGATAGAATATAAAATTTTGCGTTTGTAAATATTTTAATTTATTTTGTTATTTTAAGAAATGTTCCTTTTGTATATAAGCAAATTGATATTCTAACTAGTATATCAATACTCACTAATTTTCAAATTGATCGTCTAACGTCATACCTTTGCTGATAATTTTATGTGCTATCGTTTGAATTTCATGTGATTGAGCCTCCACAGATCCAATCATCAGTTATTTGATATAGCATGTATCGGGTTACCATGTACTTCTTGGATCCTGCTTCCTCAGCATCTTACTTCTTTTGTAACGCGTCTCATATTTTTTTTTTTGTTTTTTTTGTAGATATGGTATTGTAATAATCATATAACATCAGTGAAACCATTAAGAATTAAAATTCTTACAGATGGAATTAGTCTTGTCCATGCGTTAAGATCCTTAATTTGCTCCTCTGTTAGATTGGTTTCTAGATTTTTTGGGTTTTTAGTGGAACATGCAGACAATCTTCGTCAACAAGAGGAAAAACATCTTTTGCTTCCATCTTTTGAAATGTGCTCATTCAAAGCGAAAAGGGCGCTCGAGGTCAGAGGACATCAAATCGCCTTGGAATGGTCCAGTCATCACAGTAGAACTAGACGTCTTAAAATTGTTGTTGCAAATCTTCTAAGAGTGATGCATTATGTAGTTTTAACGTCTAGACAAAATGTGTGTTTCCTTGCCTTGTATCTCGCGTAAAGTGTAAGTATCTCGTCTGGTCAAAACGCCTTCTATGGTCAACTCGTGTAATGTTTATATCACCAATTGATCAAATTGCCTACTAAACAATTCGCCTATTGGTCAGAACGCCAATTTGTCAATTTGTTTGGTCAATTCGCC

mRNA sequence

ATGCACAGAGATAGAGACGTACTCTTGTCGGCAAAAAGAAAAAGAAACGAAAATTCAAGGCAAGATTTCAAAACTTACCCAAGAAAAATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

Coding sequence (CDS)

ATGCACAGAGATAGAGACGTACTCTTGTCGGCAAAAAGAAAAAGAAACGAAAATTCAAGGCAAGATTTCAAAACTTACCCAAGAAAAATGAAAGGTTCAACTGAAAAGAGCAAGAAGCAGGATGATAATGAATCTGATCTTCACCCTATTCCTCACTGTTCTATCATTTTAACAATCTTTGATTCAATCCTTCAACCTTTCATCTCCATTTTGAGGTTCTTTGGTTTTAAACGCGATGCCCCACCTTACCGTCCAGCGTCCTCCTCACTGGAAGATTGCTACACCGCCGGCTCAAATCCGCCTTCCACGGCGGTCGACCCACCTCATGACGATTCTGAGGAAGAAAGTGAGTACTATAGGCCACATGTTCCTCCGCGGCCGCCGTGGAGCACTGGCGGCGGTGGTCAGATAGACTAA

Protein sequence

MHRDRDVLLSAKRKRNENSRQDFKTYPRKMKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID*

Homology

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BLAST of CsaV3_6G002930 vs. NCBI nr
Match: XP_004138360.2 (uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetical protein Csa_005099 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 9.9e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MHRDRDVLLSAKRKRNENSRQDFKTYPRKMKGSTEKSKKQDDNESDLHPIPHCSIILTIF 60
           MHRDRDVLLSAKRKRNENSRQDFKTYPRKMKGSTEKSKKQDDNESDLHPIPHCSIILTIF
Sbjct: 1   MHRDRDVLLSAKRKRNENSRQDFKTYPRKMKGSTEKSKKQDDNESDLHPIPHCSIILTIF 60

Query: 61  DSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR 120
           DSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR
Sbjct: 61  DSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR 120

Query: 121 PHVPPRPPWSTGGGGQID 139
           PHVPPRPPWSTGGGGQID
Sbjct: 121 PHVPPRPPWSTGGGGQID 138

[Close]

BLAST of CsaV3_6G002930 vs. NCBI nr
Match: XP_008464348.1 (PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-55
Identity = 115/137 (83.94%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 3   RDRDVLLSAKRKRNENSRQD--FKTYPRKMKGSTEKSKKQDDNESDLHPIPHCSIILTIF 62
           RDR++LLSAKRKR +   +    K   +KMK STEKSKKQ DNESDLHPIPHCSIILTIF
Sbjct: 11  RDREILLSAKRKRKKTKIRGKISKLTQKKMKDSTEKSKKQADNESDLHPIPHCSIILTIF 70

Query: 63  DSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR 122
           DSILQ FI+ILRFFGFKR+APPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR
Sbjct: 71  DSILQAFIAILRFFGFKRNAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR 130

Query: 123 PHVPPRPPWSTGGGGQI 138
           PHVPP PPWSTGGGGQI
Sbjct: 131 PHVPPPPPWSTGGGGQI 147

[Close]

BLAST of CsaV3_6G002930 vs. NCBI nr
Match: KAA0039201.1 (uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK18468.1 uncharacterized protein E5676_scaffold607G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.8e-51
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 30  MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 89
           MK STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASSS
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 90  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 138
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 108

[Close]

BLAST of CsaV3_6G002930 vs. NCBI nr
Match: XP_038886557.1 (uncharacterized protein LOC120076731 [Benincasa hispida])

HSP 1 Score: 157.5 bits (397), Expect = 8.2e-35
Identity = 80/108 (74.07%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 33  STEKSKKQ--DDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSSL 92
           S EKSKKQ  DD+E+DLH   HC I L I DSILQ FI+ILRF GF  + PPYRPA SS 
Sbjct: 3   SIEKSKKQVDDDDETDLH--SHCPIFLIICDSILQAFIAILRFLGFNHNGPPYRPAPSSP 62

Query: 93  EDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 139
           EDCYT GS+PPSTAV+PP D+SEEESEYYRPHVPP PPWSTGGGGQ D
Sbjct: 63  EDCYTDGSDPPSTAVNPPDDESEEESEYYRPHVPPPPPWSTGGGGQTD 108

[Close]

BLAST of CsaV3_6G002930 vs. NCBI nr
Match: XP_008464347.1 (PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 uncharacterized protein E6C27_scaffold121G001200 [Cucumis melo var. makuwa] >TYK18469.1 uncharacterized protein E5676_scaffold607G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 29  KMKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASS 88
           +++ S E +K+ +D+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  S
Sbjct: 13  EIENSNENTKELNDDV--VH--DHCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILS 72

Query: 89  SLEDCYTAGSNPPSTAVDPP-HDDSEEESEYYRPHVPPRPPWSTGGGGQ 137
           S ED Y   S PP T VDPP  D  EEE E+ R + PP PP S GGGG+
Sbjct: 73  SSEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGR 113

[Close]

BLAST of CsaV3_6G002930 vs. ExPASy TrEMBL
Match: A0A0A0KBZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 30  MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 89
           MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS
Sbjct: 1   MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 60

Query: 90  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 139
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQID 109

[Close]

BLAST of CsaV3_6G002930 vs. ExPASy TrEMBL
Match: A0A1S3CLD8 (uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.9e-56
Identity = 115/137 (83.94%), Postives = 122/137 (89.05%), Query Frame = 0


Query: 3   RDRDVLLSAKRKRNENSRQD--FKTYPRKMKGSTEKSKKQDDNESDLHPIPHCSIILTIF 62
           RDR++LLSAKRKR +   +    K   +KMK STEKSKKQ DNESDLHPIPHCSIILTIF
Sbjct: 11  RDREILLSAKRKRKKTKIRGKISKLTQKKMKDSTEKSKKQADNESDLHPIPHCSIILTIF 70

Query: 63  DSILQPFISILRFFGFKRDAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR 122
           DSILQ FI+ILRFFGFKR+APPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR
Sbjct: 71  DSILQAFIAILRFFGFKRNAPPYRPASSSLEDCYTAGSNPPSTAVDPPHDDSEEESEYYR 130

Query: 123 PHVPPRPPWSTGGGGQI 138
           PHVPP PPWSTGGGGQI
Sbjct: 131 PHVPPPPPWSTGGGGQI 147

[Close]

BLAST of CsaV3_6G002930 vs. ExPASy TrEMBL
Match: A0A5D3D4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00380 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 30  MKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASSS 89
           MK STEKSKKQ DNESDLHPIPHCSIILTIFDSILQ FI+ILRFFGFKR+APPYRPASSS
Sbjct: 1   MKDSTEKSKKQADNESDLHPIPHCSIILTIFDSILQAFIAILRFFGFKRNAPPYRPASSS 60

Query: 90  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPRPPWSTGGGGQI 138
           LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPP PPWSTGGGGQI
Sbjct: 61  LEDCYTAGSNPPSTAVDPPHDDSEEESEYYRPHVPPPPPWSTGGGGQI 108

[Close]

BLAST of CsaV3_6G002930 vs. ExPASy TrEMBL
Match: A0A5A7T6U0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00390 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 29  KMKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASS 88
           +++ S E +K+ +D+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  S
Sbjct: 13  EIENSNENTKELNDDV--VH--DHCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILS 72

Query: 89  SLEDCYTAGSNPPSTAVDPP-HDDSEEESEYYRPHVPPRPPWSTGGGGQ 137
           S ED Y   S PP T VDPP  D  EEE E+ R + PP PP S GGGG+
Sbjct: 73  SSEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGR 113

[Close]

BLAST of CsaV3_6G002930 vs. ExPASy TrEMBL
Match: A0A1S3CMT1 (uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 29  KMKGSTEKSKKQDDNESDLHPIPHCSIILTIFDSILQPFISILRFFGFKRDAPPYRPASS 88
           +++ S E +K+ +D+   +H   HC   L+IF+ + Q  ++  RF GF+     +RP  S
Sbjct: 13  EIENSNENTKELNDDV--VH--DHCPFFLSIFNLVFQITMAFYRFLGFR----VHRPILS 72

Query: 89  SLEDCYTAGSNPPSTAVDPP-HDDSEEESEYYRPHVPPRPPWSTGGGGQ 137
           S ED Y   S PP T VDPP  D  EEE E+ R + PP PP S GGGG+
Sbjct: 73  SSEDSYPVDSQPPPTTVDPPIEDPGEEEREFARRNPPPPPPPSNGGGGR 113

The following BLAST results are available for this feature:

BLAST of CsaV3_6G002930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138360.2	9.9e-73	100.00	uncharacterized protein LOC101208454 [Cucumis sativus] >KAE8646592.1 hypothetica...	[more]
XP_008464348.1	1.4e-55	83.94	PREDICTED: uncharacterized protein LOC103502256 [Cucumis melo]	[more]
KAA0039201.1	2.8e-51	94.44	uncharacterized protein E6C27_scaffold121G001180 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038886557.1	8.2e-35	74.07	uncharacterized protein LOC120076731 [Benincasa hispida]	[more]
XP_008464347.1	1.3e-08	41.28	PREDICTED: uncharacterized protein LOC103502255 [Cucumis melo] >KAA0039202.1 unc...	[more]

BLAST of CsaV3_6G002930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G002930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ4	1.1e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020160 PE=4 SV=1	[more]
A0A1S3CLD8	6.9e-56	83.94	uncharacterized protein LOC103502256 OS=Cucumis melo OX=3656 GN=LOC103502256 PE=...	[more]
A0A5D3D4J4	1.4e-51	94.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T6U0	6.4e-09	41.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMT1	6.4e-09	41.28	uncharacterized protein LOC103502255 OS=Cucumis melo OX=3656 GN=LOC103502255 PE=...	[more]

BLAST of CsaV3_6G002930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G002930.1	CsaV3_6G002930.1	mRNA