CsaV3_6G002250 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G002250
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 1548848 .. 1550093 (+)
RNA-Seq ExpressionCsaV3_6G002250
SyntenyCsaV3_6G002250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATTTCATTACACTTTATAAATCTCCCCTCCATATCAAATCAAACCAACTCCACATTCGCTTCACATCTCCCTAATTTTTCCTCCTCCATCTCTTCTAACTTTTCATTTTGTTTCCTTTCTTCAATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAAAGAATTCTTTTCTTGGGTTTTTTCTTTTCTAATTTTTAAATCTATGTGTTTCGTTTAGGGTAAATATTGGTTCAAAAGTGATGTAGACTTAAGAGGAGAGGAGAGGTCAGAGATATTTCATTCATTATTTCATTATTATGCAATTATTTGTACTATTAATTCATTAACTGATGTATACTGATTAACTTTTCTTTTGTTAATCATTGGATTATTGTGTGTCTTGACGCCAAAACTCTGCCTCCATGACAAGCTTAATTTCTCATGGAAGTTTGAGAAAATATTGTGTAAATTTAATGAAAAGATTCATTTTAATGTAGAAAATGTATAATTTCTTTTTTATGGAATGATCGTAGTTGCCGGTGGTATTTATATACGTCTTAAGTTGTATTTTGAGATCATTTATTCTTCTTTTATTCTACTTTTAGTTGTACTATTCGAAAAATGTACTTCGAGGAAGGTGTTATTCAAATCTCTTATTGGGAGAGAGTTTGATTGTAATTGTTCATATTAGTGTAGGCTATATCGATGAATGTAAGATATGAAAAAAGTATAATCGTGGTGTCCGTGGAACTACCCTAAAACCTTTTTATGTGAGTAGTCAGGATAATGTGATGAGTTTTTGGGTTGTTCTAAGTGATTTCACATTCTATTGAGGGAATTATCATTCTTGATTCTTCTACTTAAAGCATATTTTCATAAGTTGTGTGGACTTTTTGGTTTGGTTGTTTTATTTGCCATTTTTTTCTTAATTCTCCTGGTTGGGTTTTGTTTATCTCTCTTTATTGCAACTCAAAATTCTTGTGAATGTAGAAAATTATCCTTGAGAAGCTCAATCACTGCAAAATAACTATGAAATAGGTTTAAA

mRNA sequence

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

Coding sequence (CDS)

ATGGCAAACCTCTTCAAAAAACTCCCACTTTTCTTCTTTCTTTTTACCCTCATTCTTCTCATCTCCGTTTCTTCTTCTTCAGCCAGATTGCTGCGCCAACAATCTCTTTCCCCCGCCCTTAAACTTGATATTCCGGCCGATCCCGCCGCACCCACAATGACCGAATATGAGTCTCTGCTTCTTGGGTTTCTTCCAAAGGGAGGATCAATCCCGCCGTCCGGACCCAGCAAAGGCACCAACAACTTCAACACTTAA

Protein sequence

MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLLLGFLPKGGSIPPSGPSKGTNNFNT*
Homology
[Close]
BLAST of CsaV3_6G002250 vs. NCBI nr
Match: KGN45830.1 (hypothetical protein Csa_005505 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.9e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of CsaV3_6G002250 vs. NCBI nr
Match: KAG6578478.1 (hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-14
Identity = 58/87 (66.67%), Postives = 63/87 (72.41%), Query Frame = 0 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS---PALKLDIPADPAAPTMTEYE 60
          MA LF K+P  FF+F +IL IS SSSSARLLR QSLS   P LKLDIP    A    EY 
Sbjct: 1  MAKLF-KVPKLFFVFAVILFISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYG 60

Query: 61 SLLLGFLPKGGSIPPSGPSKGTNNFNT 85
           L+LGFLPK G IPPSGPSKGTN+FNT
Sbjct: 61 PLILGFLPK-GRIPPSGPSKGTNDFNT 81

[Close]
BLAST of CsaV3_6G002250 vs. NCBI nr
Match: KAG6602588.1 (hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-14
Identity = 59/89 (66.29%), Postives = 63/89 (70.79%), Query Frame = 0 

Query: 1  MANLFKKLPLFFFLFTLILLISV-SSSSARLLRQQSLSPA----LKLDIPADPAAPTMTE 60
          MANLF KL  F  +  LIL +SV SSSSARLLR  SLSPA    LKLD PAD       E
Sbjct: 1  MANLF-KLSKFISVLALILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADHTTALAVE 60

Query: 61 YESLLLGFLPKGGSIPPSGPSKGTNNFNT 85
          Y +LLLGFLPKGG IPPSGPSKGTNN N+
Sbjct: 61 YGALLLGFLPKGG-IPPSGPSKGTNNLNS 87

[Close]
BLAST of CsaV3_6G002250 vs. ExPASy TrEMBL
Match: A0A0A0K7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60
          MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLSPALKLDIPADPAAPTMTEYESLL 60

Query: 61 LGFLPKGGSIPPSGPSKGTNNFNT 85
          LGFLPKGGSIPPSGPSKGTNNFNT
Sbjct: 61 LGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of CsaV3_6G002250 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45830.15.9e-36100.00hypothetical protein Csa_005505 [Cucumis sativus][more]
KAG6578478.11.7e-1466.67hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602588.16.4e-1466.29hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsaV3_6G002250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G002250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U22.9e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1[more]
BLAST of CsaV3_6G002250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G002250.1CsaV3_6G002250.1mRNA