CsaV3_6G001670 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G001670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	WUSCHEL-related homeobox 5
Location	chr6: 1116567 .. 1117326 (-)
RNA-Seq Expression	CsaV3_6G001670
Synteny	CsaV3_6G001670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGGGGTTTGTTCTAGAATATATGTAAAAGGGGGAGGAGGATGCAGCGGAGAGAGCGGTGGTGGAGGCGGAAAAGGGAGTGGGAGTAGCAAATGTGGAAGATGGAATCCAACAGCAGAACAAGTAAAAGTACTGACAGAACTGTTCAGGTCAGGGCTTAGAACTCCGAGTAGTGATCAGATTCAGAAAATCTCTCATCATCTCAGCTTTTACGGCAAGATTGAGAGCAAGAATGTGTTTTACTGGTTTCAGAATCATAAAGCACGTGAGCGACAGAAGCGTCGCAAACTTTCTCTTCCTCAACAACAACATTTCATTCTTCCACCTTCTTCTAACCTTCAACGTATGTTTGTTTTTCACCTCCTTTTTATACCTCAATTCATTTGACCTCACTTTCTAACTGCGCTTATAAGCACTTAAAAAGTCGTTTCAAACTGGCTCACTCTATTATATGACAAAGCTCGAAGGAGTGTTTTAATTGTTTCACTGATTTGGTTTTCCGGTTTGAGCAGATTTTGCAGATCAGTCAATGACGAATAAAGGTATAATGGATCAGTTGGAGCCAGAAAGAATGATGAAAACTCTTCAACTTTTTCCATTAAATTCTACCATTGATGAAACACAAGGATTACCAGAGGATCATCATCAGTATAGAGTAAATGGGAAGCAGTATGAGGATGCAACGGCTTTCACCTACAAAATAGAGACAAAAATGGATCATCCACCATTGGATCTTCGTTTAAGCTTTCTGTAG

mRNA sequence

ATGGAAGATGGGGTTTGTTCTAGAATATATGTAAAAGGGGGAGGAGGATGCAGCGGAGAGAGCGGTGGTGGAGGCGGAAAAGGGAGTGGGAGTAGCAAATGTGGAAGATGGAATCCAACAGCAGAACAAGTAAAAGTACTGACAGAACTGTTCAGGTCAGGGCTTAGAACTCCGAGTAGTGATCAGATTCAGAAAATCTCTCATCATCTCAGCTTTTACGGCAAGATTGAGAGCAAGAATGTGTTTTACTGGTTTCAGAATCATAAAGCACGTGAGCGACAGAAGCGTCGCAAACTTTCTCTTCCTCAACAACAACATTTCATTCTTCCACCTTCTTCTAACCTTCAACATTTTGCAGATCAGTCAATGACGAATAAAGGTATAATGGATCAGTTGGAGCCAGAAAGAATGATGAAAACTCTTCAACTTTTTCCATTAAATTCTACCATTGATGAAACACAAGGATTACCAGAGGATCATCATCAGTATAGAGTAAATGGGAAGCAGTATGAGGATGCAACGGCTTTCACCTACAAAATAGAGACAAAAATGGATCATCCACCATTGGATCTTCGTTTAAGCTTTCTGTAG

Coding sequence (CDS)

ATGGAAGATGGGGTTTGTTCTAGAATATATGTAAAAGGGGGAGGAGGATGCAGCGGAGAGAGCGGTGGTGGAGGCGGAAAAGGGAGTGGGAGTAGCAAATGTGGAAGATGGAATCCAACAGCAGAACAAGTAAAAGTACTGACAGAACTGTTCAGGTCAGGGCTTAGAACTCCGAGTAGTGATCAGATTCAGAAAATCTCTCATCATCTCAGCTTTTACGGCAAGATTGAGAGCAAGAATGTGTTTTACTGGTTTCAGAATCATAAAGCACGTGAGCGACAGAAGCGTCGCAAACTTTCTCTTCCTCAACAACAACATTTCATTCTTCCACCTTCTTCTAACCTTCAACATTTTGCAGATCAGTCAATGACGAATAAAGGTATAATGGATCAGTTGGAGCCAGAAAGAATGATGAAAACTCTTCAACTTTTTCCATTAAATTCTACCATTGATGAAACACAAGGATTACCAGAGGATCATCATCAGTATAGAGTAAATGGGAAGCAGTATGAGGATGCAACGGCTTTCACCTACAAAATAGAGACAAAAATGGATCATCCACCATTGGATCTTCGTTTAAGCTTTCTGTAG

Protein sequence

MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFADQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGKQYEDATAFTYKIETKMDHPPLDLRLSFL*

Homology

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BLAST of CsaV3_6G001670 vs. NCBI nr
Match: KAE8646563.1 (hypothetical protein Csa_005730 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 1.1e-106
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60
           MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60

Query: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120
           DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD
Sbjct: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120

Query: 121 QSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGKQYEDATAFTYKI 180
           QSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGKQYEDATAFTYKI
Sbjct: 121 QSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGKQYEDATAFTYKI 180

Query: 181 ETKMDHPPLDLRLSFL 197
           ETKMDHPPLDLRLSFL
Sbjct: 181 ETKMDHPPLDLRLSFL 196

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BLAST of CsaV3_6G001670 vs. NCBI nr
Match: XP_008441440.1 (PREDICTED: WUSCHEL-related homeobox 5 [Cucumis melo] >KAA0055065.1 WUSCHEL-related homeobox 5 [Cucumis melo var. makuwa] >TYK24420.1 WUSCHEL-related homeobox 5 [Cucumis melo var. makuwa])

HSP 1 Score: 389.8 bits (1000), Expect = 1.4e-104
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60
           MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60

Query: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120
           DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD
Sbjct: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120

Query: 121 QSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGKQYEDATAFTYKI 180
           QS TNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPED+H YRVNGKQYEDATAFTYKI
Sbjct: 121 QSTTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDNHHYRVNGKQYEDATAFTYKI 180

Query: 181 ETKMDHPPLDLRLSFL 197
           ETKMDHPPLDLRLSFL
Sbjct: 181 ETKMDHPPLDLRLSFL 196

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BLAST of CsaV3_6G001670 vs. NCBI nr
Match: XP_022939921.1 (WUSCHEL-related homeobox 5-like [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 3.7e-81
Identity = 174/218 (79.82%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGE-SGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGCSGE  GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCSGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP-----QQQHF------- 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK+SL      QQQHF       
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLS 127

Query: 121 ---------ILPPSSNLQHFADQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPE 180
                    I+PPS+   HFADQS TNKGIM +LEPERMMKTLQLFPLNS IDETQG  +
Sbjct: 128 NDHNNNNNNIIPPSN---HFADQSSTNKGIM-ELEPERMMKTLQLFPLNS-IDETQG-SD 187

Query: 181 DHHQYRVNGKQYEDATAFTYKIETKMDHPPLDLRLSFL 197
           D+HQ+RV+GKQ+EDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 DYHQFRVDGKQFEDATSFTYKIETKMDHPPLDLRLSFL 218

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BLAST of CsaV3_6G001670 vs. NCBI nr
Match: KAG6578442.1 (WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 172/217 (79.26%), Postives = 183/217 (84.33%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGE-SGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGC GE  GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCGGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSL-----PQQQHFI------ 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK+SL      QQQHF+      
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSQQQQHFLHSLHLS 127

Query: 121 ---------LPPSSNLQHFADQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPED 180
                    +PPS+   HFADQS TNKGIM +LEPERMMKTLQLFPLNS IDETQG  +D
Sbjct: 128 NDHNNNNNNIPPSN---HFADQSSTNKGIM-ELEPERMMKTLQLFPLNS-IDETQG-SDD 187

Query: 181 HHQYRVNGKQYEDATAFTYKIETKMDHPPLDLRLSFL 197
           +HQ+RV+GKQ+EDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 YHQFRVDGKQFEDATSFTYKIETKMDHPPLDLRLSFL 217

[Close]

BLAST of CsaV3_6G001670 vs. NCBI nr
Match: XP_023549507.1 (WUSCHEL-related homeobox 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 5.3e-80
Identity = 172/220 (78.18%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGE-SGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGC GE  GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCGGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP-----QQQHF------- 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK+SL      QQQHF       
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLS 127

Query: 121 -----------ILPPSSNLQHFADQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGL 180
                      I+PP++   HFADQS TNKGIM +LEPERMMKTLQLFPLNS IDETQG 
Sbjct: 128 NDHNNNNNNNNIIPPTN---HFADQSSTNKGIM-ELEPERMMKTLQLFPLNS-IDETQG- 187

Query: 181 PEDHHQYRVNGKQYEDATAFTYKIETKMDHPPLDLRLSFL 197
            +D+HQ+RV+GK YEDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 SDDYHQFRVDGKHYEDATSFTYKIETKMDHPPLDLRLSFL 220

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BLAST of CsaV3_6G001670 vs. ExPASy Swiss-Prot
Match: Q8H1D2 (WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana OX=3702 GN=WOX5 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.9e-38
Identity = 92/184 (50.00%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 19  GESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIES 78
           G S  G   G   +KCGRWNPT EQ+K+LT+LFR+GLRTP++DQIQKIS  LSFYGKIES
Sbjct: 7   GRSLRGNNNGGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIES 66

Query: 79  KNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFADQSMTNKGIMDQLEPERMM 138
           KNVFYWFQNHKARERQKRRK+S+    H   P + ++   +++        D  E E+++
Sbjct: 67  KNVFYWFQNHKARERQKRRKISIDFDHHHHQPSTRDVFEISEE--------DCQEEEKVI 126

Query: 139 KTLQLFPLNSTIDETQGLPE----DHHQYRVNGKQYEDATAFTY-KIETKMDH-PPLDLR 197
           +TLQLFP+NS  D    + +     ++QYR   ++    +   Y     +M+H PPLDLR
Sbjct: 127 ETLQLFPVNSFEDSNSKVDKMRARGNNQYREYIRETTTTSFSPYSSCGAEMEHPPPLDLR 182

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy Swiss-Prot
Match: Q9FFK0 (WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana OX=3702 GN=WOX7 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.9e-28
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 11  VKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHL 70
           +K  G C+  +GGGG      +KCGRWNPT EQVK+LT+LF++GLRTPS+DQIQKIS  L
Sbjct: 8   IKARGLCNNNNGGGG----TGAKCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMEL 67

Query: 71  SFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQH 107
           SFYGKIESKNVFYWFQNHKARERQK RK+S  +  H
Sbjct: 68  SFYGKIESKNVFYWFQNHKARERQKCRKISTVKFDH 99

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy Swiss-Prot
Match: Q8W0F1 (WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX9 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 33 KCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARE 92
          KCGRWNPTAEQVKVLTELFR+GLRTPS++QIQ+IS HLS +GK+ESKNVFYWFQNHKARE
Sbjct: 11 KCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARE 70

Query: 93 RQKRRK 99
          R   +K
Sbjct: 71 RHHHKK 76

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy Swiss-Prot
Match: Q9SIB4 (WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.8e-21
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 36  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 95
           RW PT EQ+ +L E++RSG+RTP++ QIQ+I+ HL+FYG+IE KNVFYWFQNHKAR+RQK
Sbjct: 8   RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67

Query: 96  RRK---LSLPQQQHFILPPSSNLQHFADQSM----TNKGIMDQLEP 135
            RK     L QQQH +      ++     SM     NK I+D   P
Sbjct: 68  LRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDHHNP 113

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy Swiss-Prot
Match: A2ZH47 (WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. indica OX=39946 GN=WOX3 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-20
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 36  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 95
           RW PT EQ+ +L E++RSG+RTP++ +IQ+I+ HL++YG+IE KNVFYWFQNHKARERQ+
Sbjct: 8   RWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67

Query: 96  RRKLSLPQQQHFILPPSSNL 116
            R+    + Q    PPSS +
Sbjct: 68  LRRRLCARHQQQPSPPSSTV 87

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy TrEMBL
Match: A0A5A7UN53 (WUSCHEL-related homeobox 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002150 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 6.7e-105
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60
           MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60

Query: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120
           DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD
Sbjct: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120

Query: 121 QSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGKQYEDATAFTYKI 180
           QS TNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPED+H YRVNGKQYEDATAFTYKI
Sbjct: 121 QSTTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDNHHYRVNGKQYEDATAFTYKI 180

Query: 181 ETKMDHPPLDLRLSFL 197
           ETKMDHPPLDLRLSFL
Sbjct: 181 ETKMDHPPLDLRLSFL 196

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy TrEMBL
Match: A0A1S3B2Z9 (WUSCHEL-related homeobox 5 OS=Cucumis melo OX=3656 GN=LOC103485558 PE=3 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 6.7e-105
Identity = 193/196 (98.47%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60
           MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS
Sbjct: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60

Query: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120
           DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD
Sbjct: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFAD 120

Query: 121 QSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGKQYEDATAFTYKI 180
           QS TNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPED+H YRVNGKQYEDATAFTYKI
Sbjct: 121 QSTTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDNHHYRVNGKQYEDATAFTYKI 180

Query: 181 ETKMDHPPLDLRLSFL 197
           ETKMDHPPLDLRLSFL
Sbjct: 181 ETKMDHPPLDLRLSFL 196

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy TrEMBL
Match: A0A6J1FH52 (WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111445643 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.8e-81
Identity = 174/218 (79.82%), Postives = 184/218 (84.40%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGE-SGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGCSGE  GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 8   MEDGVCSRIYVK-GGGCSGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 67

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP-----QQQHF------- 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK+SL      QQQHF       
Sbjct: 68  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQQQHFLHPLHLS 127

Query: 121 ---------ILPPSSNLQHFADQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPE 180
                    I+PPS+   HFADQS TNKGIM +LEPERMMKTLQLFPLNS IDETQG  +
Sbjct: 128 NDHNNNNNNIIPPSN---HFADQSSTNKGIM-ELEPERMMKTLQLFPLNS-IDETQG-SD 187

Query: 181 DHHQYRVNGKQYEDATAFTYKIETKMDHPPLDLRLSFL 197
           D+HQ+RV+GKQ+EDAT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 188 DYHQFRVDGKQFEDATSFTYKIETKMDHPPLDLRLSFL 218

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy TrEMBL
Match: A0A6J1JWK4 (WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111489507 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.8e-79
Identity = 170/218 (77.98%), Postives = 180/218 (82.57%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGE-SGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60
           MEDGVCSRIYVK GGGC GE  GGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS
Sbjct: 1   MEDGVCSRIYVK-GGGCGGEGGGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPS 60

Query: 61  SDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSLP-----QQQHF------- 120
           SDQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK+SL      Q QHF       
Sbjct: 61  SDQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSLSLDHSHQHQHFLHPLHLS 120

Query: 121 ---------ILPPSSNLQHFADQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPE 180
                    I+PP++   HFADQS  NKGIM +LEPERMMKTLQLFPLNS IDETQG  +
Sbjct: 121 NDHHHNNNNIIPPTN---HFADQSSPNKGIM-ELEPERMMKTLQLFPLNS-IDETQG-SD 180

Query: 181 DHHQYRVNGKQYEDATAFTYKIETKMDHPPLDLRLSFL 197
           D+HQ+RV+GKQYE AT+FTYKIETKMDHPPLDLRLSFL
Sbjct: 181 DYHQFRVDGKQYEGATSFTYKIETKMDHPPLDLRLSFL 211

[Close]

BLAST of CsaV3_6G001670 vs. ExPASy TrEMBL
Match: A0A6J1GMY2 (WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111455970 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.6e-72
Identity = 157/208 (75.48%), Postives = 171/208 (82.21%), Query Frame = 0


Query: 1   MEDGVCSRIYVKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 60
           M++G+ SR YVK  GG  G+ GG  GKGS SSKCGRWNPTAEQVKVLTELFRSGLRTPSS
Sbjct: 7   MDEGISSRFYVKPAGG-GGDGGGVAGKGSMSSKCGRWNPTAEQVKVLTELFRSGLRTPSS 66

Query: 61  DQIQKISHHLSFYGKIESKNVFYWFQNHKARERQKRRKLSL-----------PQQQHFIL 120
           DQIQKISH LSFYGKIESKNVFYWFQNHKARERQKRRK+S+            QQQHFIL
Sbjct: 67  DQIQKISHQLSFYGKIESKNVFYWFQNHKARERQKRRKVSISLDHTHHHHHHQQQQHFIL 126

Query: 121 PPSSNLQHFA-DQSMTNKGIMDQLEPERMMKTLQLFPLNSTIDETQGLPEDHHQYRVNGK 180
           PP SN  +FA DQS TNKG   +LEPERMMKTLQLFPLNS I ET+G  ++ HQ+RVNGK
Sbjct: 127 PPCSN--YFADDQSTTNKGGTMELEPERMMKTLQLFPLNS-IGETEG--DNDHQFRVNGK 186

Query: 181 QYEDATAFTYKIETKMDHPPLDLRLSFL 197
           QYE+ATAFTYKI TKM+HPPLDLRLSFL
Sbjct: 187 QYEEATAFTYKIGTKMEHPPLDLRLSFL 208

[Close]

BLAST of CsaV3_6G001670 vs. TAIR 10
Match: AT3G11260.1 (WUSCHEL related homeobox 5 )

HSP 1 Score: 158.3 bits (399), Expect = 6.3e-39
Identity = 92/184 (50.00%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 19  GESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIES 78
           G S  G   G   +KCGRWNPT EQ+K+LT+LFR+GLRTP++DQIQKIS  LSFYGKIES
Sbjct: 7   GRSLRGNNNGGTGTKCGRWNPTVEQLKILTDLFRAGLRTPTTDQIQKISTELSFYGKIES 66

Query: 79  KNVFYWFQNHKARERQKRRKLSLPQQQHFILPPSSNLQHFADQSMTNKGIMDQLEPERMM 138
           KNVFYWFQNHKARERQKRRK+S+    H   P + ++   +++        D  E E+++
Sbjct: 67  KNVFYWFQNHKARERQKRRKISIDFDHHHHQPSTRDVFEISEE--------DCQEEEKVI 126

Query: 139 KTLQLFPLNSTIDETQGLPE----DHHQYRVNGKQYEDATAFTY-KIETKMDH-PPLDLR 197
           +TLQLFP+NS  D    + +     ++QYR   ++    +   Y     +M+H PPLDLR
Sbjct: 127 ETLQLFPVNSFEDSNSKVDKMRARGNNQYREYIRETTTTSFSPYSSCGAEMEHPPPLDLR 182

[Close]

BLAST of CsaV3_6G001670 vs. TAIR 10
Match: AT5G05770.1 (WUSCHEL related homeobox 7 )

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-29
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 11  VKGGGGCSGESGGGGGKGSGSSKCGRWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHL 70
           +K  G C+  +GGGG      +KCGRWNPT EQVK+LT+LF++GLRTPS+DQIQKIS  L
Sbjct: 8   IKARGLCNNNNGGGG----TGAKCGRWNPTVEQVKLLTDLFKAGLRTPSTDQIQKISMEL 67

Query: 71  SFYGKIESKNVFYWFQNHKARERQKRRKLSLPQQQH 107
           SFYGKIESKNVFYWFQNHKARERQK RK+S  +  H
Sbjct: 68  SFYGKIESKNVFYWFQNHKARERQKCRKISTVKFDH 99

[Close]

BLAST of CsaV3_6G001670 vs. TAIR 10
Match: AT2G28610.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-22
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 36  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 95
           RW PT EQ+ +L E++RSG+RTP++ QIQ+I+ HL+FYG+IE KNVFYWFQNHKAR+RQK
Sbjct: 8   RWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQK 67

Query: 96  RRK---LSLPQQQHFILPPSSNLQHFADQSM----TNKGIMDQLEP 135
            RK     L QQQH +      ++     SM     NK I+D   P
Sbjct: 68  LRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDHHNP 113

[Close]

BLAST of CsaV3_6G001670 vs. TAIR 10
Match: AT3G18010.1 (WUSCHEL related homeobox 1 )

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-21
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 36  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 95
           RWNPT +Q++VL EL+R G RTPS+D IQ+I+  L  YGKIE KNVFYWFQNHKARERQK
Sbjct: 76  RWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQK 135

Query: 96  RRKLSLPQQQHFILPPSS 114
           RR+      +  +L  +S
Sbjct: 136 RRRQMETGHEETVLSTAS 153

[Close]

BLAST of CsaV3_6G001670 vs. TAIR 10
Match: AT2G01500.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 6.6e-20
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 36  RWNPTAEQVKVLTELFRSGLRTPSSDQIQKISHHLSFYGKIESKNVFYWFQNHKARERQK 95
           RWNPT EQ+  L EL+RSG RTP+++QIQ+I+  L  YG+IE KNVFYWFQNHKARER K
Sbjct: 61  RWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLK 120

Query: 96  RRK 99
           RR+
Sbjct: 121 RRR 123

The following BLAST results are available for this feature:

BLAST of CsaV3_6G001670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646563.1	1.1e-106	100.00	hypothetical protein Csa_005730 [Cucumis sativus]	[more]
XP_008441440.1	1.4e-104	98.47	PREDICTED: WUSCHEL-related homeobox 5 [Cucumis melo] >KAA0055065.1 WUSCHEL-relat...	[more]
XP_022939921.1	3.7e-81	79.82	WUSCHEL-related homeobox 5-like [Cucurbita moschata]	[more]
KAG6578442.1	1.4e-80	79.26	WUSCHEL-related homeobox 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023549507.1	5.3e-80	78.18	WUSCHEL-related homeobox 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G001670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1D2	8.9e-38	50.00	WUSCHEL-related homeobox 5 OS=Arabidopsis thaliana OX=3702 GN=WOX5 PE=2 SV=1	[more]
Q9FFK0	4.9e-28	68.75	WUSCHEL-related homeobox 7 OS=Arabidopsis thaliana OX=3702 GN=WOX7 PE=2 SV=1	[more]
Q8W0F1	1.3e-25	81.82	WUSCHEL-related homeobox 9 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX9 PE=2...	[more]
Q9SIB4	5.8e-21	51.89	WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1	[more]
A2ZH47	3.8e-20	56.25	WUSCHEL-related homeobox 3 OS=Oryza sativa subsp. indica OX=39946 GN=WOX3 PE=3 S...	[more]

BLAST of CsaV3_6G001670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UN53	6.7e-105	98.47	WUSCHEL-related homeobox 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B2Z9	6.7e-105	98.47	WUSCHEL-related homeobox 5 OS=Cucumis melo OX=3656 GN=LOC103485558 PE=3 SV=1	[more]
A0A6J1FH52	1.8e-81	79.82	WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111445643 PE...	[more]
A0A6J1JWK4	4.8e-79	77.98	WUSCHEL-related homeobox 5-like OS=Cucurbita maxima OX=3661 GN=LOC111489507 PE=3...	[more]
A0A6J1GMY2	2.6e-72	75.48	WUSCHEL-related homeobox 5-like OS=Cucurbita moschata OX=3662 GN=LOC111455970 PE...	[more]

BLAST of CsaV3_6G001670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11260.1	6.3e-39	50.00	WUSCHEL related homeobox 5	[more]
AT5G05770.1	3.5e-29	68.75	WUSCHEL related homeobox 7	[more]
AT2G28610.1	4.1e-22	51.89	Homeodomain-like superfamily protein	[more]
AT3G18010.1	4.6e-21	60.26	WUSCHEL related homeobox 1	[more]
AT2G01500.1	6.6e-20	68.25	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 32..99 e-value: 3.4E-4 score: 28.6
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 34..94 e-value: 2.8E-18 score: 65.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 30..95 score: 11.158985
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 36..96 e-value: 4.5137E-4 score: 35.2969
None	No IPR available	GENE3D	1.10.10.60		coord: 33..100 e-value: 8.0E-10 score: 40.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..36
None	No IPR available	PANTHER	PTHR45940:SF3	WUSCHEL-RELATED HOMEOBOX 7	coord: 21..183
IPR044555	Protein WUSCHEL-like	PANTHER	PTHR45940	WUSCHEL-RELATED HOMEOBOX 1-RELATED	coord: 21..183
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 31..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G001670.1	CsaV3_6G001670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity