CsaV3_6G001620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G001620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	GATA type zinc finger transcription factor family protein
Location	chr6: 1061687 .. 1064894 (-)
RNA-Seq Expression	CsaV3_6G001620
Synteny	CsaV3_6G001620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAACATACATATATGTGTATATATGTATATATGTATACACATATGTATATTATACTATATATAATGGATGGGGTCCAGGTTGAAAGGGTCAACGGTTGAATATTTTGGGGGTTACAGCGAAGAAGGAAGAGCCATGGCAATGGCGTCTGGAGGAGGCGCGTGGTGGTAACAGCTATAACTCAGTGGTTGAAGAAGCCAAAATTAATGGTGGGTCACAATTCTTTCTTGCCAACCTGATCTTTATCTTCTTTTCTGTTCTTCCTTTTTAATTATTTCTTCTAATGCGTTGTAATCAGATTACATTAATCAATAAAAATCTTTCTTTAATTTTTCTCTTTATTATTAATCCCAAATTCGAACATAAAACTCCCACTACGCTGCGCCAAAAAGGGGGTCCAATCCAATCCCTTTACTTGTTTTTCTCTTCTTCCCTCGATCTTTCTTCCTTTCTCCTCTCGACCCTTTCCCCACCTTCGATTTCTCCCACGAATTCGCTTCTGGGTTCTTTGTTTTGGCCCTTTTCGTTTACAGATCCACCGTTTTTCCAAGTTCTTATCTCAGGTTTGTGATTTTAACTCCGTTTTGTTTCACATTTCCAGCTCCCAACTCCCAAGATCACGATTGATTTCTCGTCTTTAAGATCTTTGTTGTTAAACAGTGTTGGTTCTGGGTGCGTTTATTGGCTTCAGGTTCATGTTTGTTTTGTTGGAATATCATGATCTAATCTTGAATGGGATCGGGAGTTTAAGTTAATCTCTCTCTGGTGGATTTTTTATTATTATTATATTTTTTTTTTTTGCATTTTCTTCTTCATGAAACAGAAGTTGATTTGAAGGGTATCTGTGTTTAGTTTGATTAATGTAGTTTTTTTATGATTGTGATCTAACAAAACAGAGAAAGGAACTTAGGTTTGAGAGTTGGGGATTGCTTGTCATCTTGATTGGTTGGGTGAAAAAGGGTCAGATCTAATTCCAAGGGCTTAGCTATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGGTATTGCTTTGTATGTTTTGAGTTGGATTCTCATCTTTGAACCAAAGGGTTAAGATATATTTATTCTTTTGTATGTGTTTTAGAAACTCTGATAGCTATACCATGTTAATTGACAACTAAATTTATAAGTTTAAGTTTATTGGTTATAATGCATATAGATATTCTTATACACGTATTCTTGATATGCTTTCTGCTCTTGCCAAACTAATTTTTAAAGGATATTTGATTGTGGTATTAACCTCTGCCTCAAGTATATCTATCACAACCTACATATCAAATGTTCCCAAGTATAGTTTAACTGTTCAAAGGAGGTAAAATATTAAATACAATAACTCCTGATCTTGATTTGAACAATAGCAAGAGATTTTCTACAAGGATTGGATGGTGGTTTTTATTTTAAAGATGGAACTTTATCTTACTGTTTATAACACTGGCCTCTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACGTACGTTTTGATCTTCTTTCAGTTAGATTTATGTTTCACTTCGCAAAAATTTTGCTTTCACATGTTTAATTGTTTTTGAGTGTTATTTTCAACAGCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGGTAATTTCCTGTTGTAATCAATTGTAATTTGATATTTGGGAGCTCTCTCCAAGTAGATAAAATTATGCTGTGTATTGCCTCTGATTCTTGTAACCACTAACATGTTGCAGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAAACCACCTACTGAGATCTTGACAAATAATTCATTGTCCCCTTCTTCCCCTTCAACAAAAGGAAGAGGGAACATCTGTTGGAGCAGACTAATTAGTTGGGTTCAATGTTAAAAATATTTATAAGTTTTGCTATAAAGCTGTGATACAAAATTTGAACAGTGTCATTTGGGATCAGTGAATATTCTTAGTTGCATACATTCAAATATTCATCTCATATTACTTTCAGAAAAAACAGTAGATAGTTTTATAGAGGATTATATGAATTTGTTATTAAAAATACTTGCAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAAAGTTCCAATTCTTATATCATCATCATCATTCACGGTTTCGGACTTAACTCTCTATTTTACATGAATGTGTTTAACTTAAATTTTTATGGTATTGAGATGGGAAAGAAGGGTAAAGGAAAAATATATATGTTTACCATCATTTCGGCTCATGTGTTTATTTGGGCAAACTGTTGAATTTGATCGATATTTGAGGTGCAAACCTTATATATTGTTTTCAGGACTTGCATATTTGCATGTTTTGAGCATTATGCATTGTGTTTCCGTGCACGAAAAAGTATTTATGGCGAGAATAGGAACTCTCTTGATCTTGCTGTAAGGTTTTTTTTTCATCCTGTAGCCCAAAAAGCTGCATATTGAGTACCCAACAAAAAGAGATTTCTCTTCTAATGGACACCATAAGGTGGGATGAAACATATTCTGGAATGATTTTTTCGGCAATGTGATATTATGATATATGGGAACTAACACGTGATCATTGAATATATACCATGGAGTGAGATTTGATTATAAAGACCAAGCTGCAGATATTGTGGGCTAGAAATAAAATGTGAAGAAAAAGGGAAAGTGTAACCACAATTTTGTGAGGGAAGTGAGTGATGCCATGCACAAGTTAATGCTAAAAAATGATTTTAAAAGTGAGTTAAAACAAACAAATTTATTCTAATCAAGCTCTTTTTTTCAGTAGACATTTTTGTAAATAATGAATAA

mRNA sequence

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAA

Coding sequence (CDS)

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTAGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAATCTTGCTTCAAATGCAGCCACTGCAAAGGGACCCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACTGGCAATTTCAACAAAAATTTCCAATCACCTGCCAAGTCAGCTGAGAAGTTAACCCCAGAGCTGACTAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGCAAAACTGTCTATCCATTAGAGAAGGTAACGGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTTTATCCCCATCAAACTATGCAGCATTAGAGGGTATTCTATATTGCAAACACCACTTCTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGCTCCGCTGCCCCGGTTCCTGAAGCTTAA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRSAAPVPEA*

Homology

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BLAST of CsaV3_6G001620 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 6.4e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           RSAAPVPEA
Sbjct: 181 RSAAPVPEA 189

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BLAST of CsaV3_6G001620 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 394.4 bits (1012), Expect = 5.4e-106
Identity = 186/189 (98.41%), Postives = 188/189 (99.47%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADG+SYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGISYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           RSAAPVPEA
Sbjct: 181 RSAAPVPEA 189

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BLAST of CsaV3_6G001620 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387.5 bits (994), Expect = 6.6e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R AA VPEA
Sbjct: 181 RPAASVPEA 189

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BLAST of CsaV3_6G001620 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103
Identity = 182/189 (96.30%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK+CEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKSCEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R AA VPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of CsaV3_6G001620 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103
Identity = 182/189 (96.30%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R AA VPEA
Sbjct: 181 RPAASVPEA 189

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BLAST of CsaV3_6G001620 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 8.5e-94
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

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BLAST of CsaV3_6G001620 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 8.7e-91
Identity = 155/190 (81.58%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LSADG+SYHK+CFKCSHCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKE+G+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRSAAPVPEA 190
           KR+ A    A
Sbjct: 181 KRATAAATAA 190

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.6e-71
Identity = 122/184 (66.30%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+ +G +YHKSCF+C+HCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GN++KNFQ  A   EK    LTR+PSK +  FSGTQDKCATC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E +SYHK+CF+C+H GC L+ S+YA+L G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RSAA 185
           R +A
Sbjct: 181 RRSA 182

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.5e-70
Identity = 115/184 (62.50%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS +G+ YHKSCF+C+HCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNF+KNFQ P K+ +   PELTR+PSK + +F GTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC L+ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RSAA 185
           R+A+
Sbjct: 181 RTAS 180

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69
Identity = 125/189 (66.14%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ ++ L+ADGV YHK+CFKCSHCKG L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETG+F+K F    +S +K   EL R+PSK    FSGTQDKCA C KTVYPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHL-IKSASM 180
           +T+E +SYHKSCFKCSHGGC L+ S+YAAL G+LYCK HF QLF EKGSYNH+  KS S 
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQ 180

Query: 181 KRSAAPVPE 189
           +     VPE
Sbjct: 181 EVLPEVVPE 186

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.1e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           RSAAPVPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.1e-107
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           RSAAPVPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.2e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R AA VPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.2e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RSAAPVPEA 190
           R AA VPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of CsaV3_6G001620 vs. ExPASy TrEMBL
Match: A0A6J1JU67 (LIM domain-containing protein WLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC111487536 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.0e-101
Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNY SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEK TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVE+Q YHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180

Query: 181 RSAAPVPEA 190
           R+AA VPEA
Sbjct: 181 RNAASVPEA 188

[Close]

BLAST of CsaV3_6G001620 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of CsaV3_6G001620 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of CsaV3_6G001620 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of CsaV3_6G001620 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

[Close]

BLAST of CsaV3_6G001620 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 344.4 bits (882), Expect = 6.0e-95
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RSAA 185
           RSAA
Sbjct: 181 RSAA 184

The following BLAST results are available for this feature:

BLAST of CsaV3_6G001620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138434.1	6.4e-107	100.00	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED...	[more]
XP_038884117.1	5.4e-106	98.41	LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom...	[more]
XP_022939310.1	6.6e-104	96.83	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do...	[more]
KAG6578438.1	1.5e-103	96.30	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_023550254.1	1.5e-103	96.30	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G001620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	8.5e-94	86.41	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	8.7e-91	81.58	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	2.6e-71	66.30	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	6.5e-70	62.50	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q7F9R9	1.1e-69	66.14	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of CsaV3_6G001620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3E4	3.1e-107	100.00	LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=...	[more]
A0A0A0KAA4	3.1e-107	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1	[more]
A0A6J1K140	3.2e-104	96.83	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197...	[more]
A0A6J1FFI9	3.2e-104	96.83	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]
A0A6J1JU67	2.0e-101	95.77	LIM domain-containing protein WLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of CsaV3_6G001620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	6.0e-95	86.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	6.0e-95	86.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	6.0e-95	86.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	6.0e-95	86.41	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	6.0e-95	86.41	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 8.0E-14 score: 61.9 coord: 107..159 e-value: 2.8E-13 score: 60.1
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 108..163 e-value: 2.6E-11 score: 43.5 coord: 10..65 e-value: 2.4E-12 score: 46.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.672
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.711699
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 3.6E-21 score: 77.1 coord: 102..172 e-value: 1.6E-20 score: 75.0
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..189
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..189
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 9.36825E-37 score: 120.268
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 4.94217E-42 score: 133.744
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G001620.1	CsaV3_6G001620.1	mRNA