CsaV3_6G001100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G001100
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 742131 .. 742346 (-)
RNA-Seq ExpressionCsaV3_6G001100
SyntenyCsaV3_6G001100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTACACGACAAGTAAAGGAAGGTAAAAGAATCTCTGGGTCAAAACGCACCGTATCTTTAACATTTATTCTGCTTGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCAGTGGGCAGTGCCATTCATCTCTTTGTTTCCCTGTGTAAAGTAAAGAGCCATGAGAAATCACGACCGCACATCATAGGGCCCCATCATCAGGTGCCTTAG

mRNA sequence

ATGCGTACACGACAAGTAAAGGAAGGTAAAAGAATCTCTGGGTCAAAACGCACCGTATCTTTAACATTTATTCTGCTTGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCAGTGGGCAGTGCCATTCATCTCTTTGTTTCCCTGTGTAAAGTAAAGAGCCATGAGAAATCACGACCGCACATCATAGGGCCCCATCATCAGGTGCCTTAG

Coding sequence (CDS)

ATGCGTACACGACAAGTAAAGGAAGGTAAAAGAATCTCTGGGTCAAAACGCACCGTATCTTTAACATTTATTCTGCTTGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCTGTGGCAGTGGGCAGTGCCATTCATCTCTTTGTTTCCCTGTGTAAAGTAAAGAGCCATGAGAAATCACGACCGCACATCATAGGGCCCCATCATCAGGTGCCTTAG

Protein sequence

MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSRPHIIGPHHQVP*
Homology
[Close]
BLAST of CsaV3_6G001100 vs. NCBI nr
Match: KGN45717.1 (hypothetical protein Csa_005570 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.3e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60
          MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR
Sbjct: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60

Query: 61 PHIIGPHHQVP 72
          PHIIGPHHQVP
Sbjct: 61 PHIIGPHHQVP 71

[Close]
BLAST of CsaV3_6G001100 vs. ExPASy TrEMBL
Match: A0A0A0KBE5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008000 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60
          MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR
Sbjct: 1  MRTRQVKEGKRISGSKRTVSLTFILLAVAVAVAVAVAVAVGSAIHLFVSLCKVKSHEKSR 60

Query: 61 PHIIGPHHQVP 72
          PHIIGPHHQVP
Sbjct: 61 PHIIGPHHQVP 71

The following BLAST results are available for this feature:
BLAST of CsaV3_6G001100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45717.13.3e-27100.00hypothetical protein Csa_005570 [Cucumis sativus][more]
BLAST of CsaV3_6G001100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G001100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBE51.6e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G008000 PE=4 SV=1[more]
BLAST of CsaV3_6G001100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G001100.1CsaV3_6G001100.1mRNA