CsaV3_6G000980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G000980
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionBAG family molecular chaperone regulator 6
Locationchr6: 655857 .. 656809 (-)
RNA-Seq ExpressionCsaV3_6G000980
SyntenyCsaV3_6G000980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGTGAGTTATACTGTTCTTTATTTTCTCTATCGTTTTTTGTTTTGAATTGGGTGTTGTGTAGTTCATGTTTCATTTCTCGAAATTCTCCAATTTGAAATGTGGAACTTGAATCGCGCCCTTTTGTTATCCAAATGCAAAATGGGATTTGAATCTTTGTTTTTTTTCTTTCTTATAAATTCAATGTGAATTGATGATCCTGAATAGTGCTGCGATTAATTTATATCCAACCCATCCTATCCTTTTATGAGTCAGTCTGGCAAGTTTCCATTTCTTTAGCTTTCTTTTGATTGGGTTTTTTTTTTTTTTTCATTGTTACTTGAATTTGGGTGAGTTACTCGTTGTCATGAACAATTTTCTATCCCGGACTTGAGAAGGTATTAGTTGCAATTTAAAGGCTTTAAACTCATGGAATGAGATCAAAATTACTCTCTATTCTGTTCTTAAAGACATTAACAGAAAAATGATGTTGGAATGCTATGAATCCATTTGTTATCAAGTACGGGTCTCGCTGCCCGGTCAGCGAGTCGGGTCCAGGGGCGACAATCTGCATCGTATGATAATGTTTTGTTGTTGAGTATATTTATTGCCTGGACATTCATAACGTCTCTCTAAAATGTGATTTTGATAATTCACTTTTACAGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

mRNA sequence

ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

Coding sequence (CDS)

ATGTATAAAATGGCTCAGCGTTCCCAAGAACAATCAATTCTTGTATCGCCGAGTATTTCTGATCGTCTTTTAAGCGACAAAGCAAATTCAAATTTCTGTTTTCTGGGTTGGTGGGCCGTTTTCGCGCCGAAATCTAAGTCATCTGGATTGTGTTGGATTCGACTGGCTGGATTTTACTTACTGTTTCGTACTTCTTCTGCAAACCCTAGACTGGGTGGAATAACAAAAATTTTAAGGATTGTGTTAGCTGAGCAGGCTTATTATTTGTCCTGTAAGCCTATTGGATCTTTTTGTGGACTTCAGATCAAATAG

Protein sequence

MYKMAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFRTSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK*
Homology
[Close]
BLAST of CsaV3_6G000980 vs. NCBI nr
Match: KGN45705.2 (hypothetical protein Csa_004938 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MYKMAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYL 60
           MYKMAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYL
Sbjct: 1   MYKMAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYL 60

Query: 61  LFRTSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 104
           LFRTSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Sbjct: 61  LFRTSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 103

[Close]
BLAST of CsaV3_6G000980 vs. NCBI nr
Match: TYK14025.1 (BAG family molecular chaperone regulator 6 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-24
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 4  MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63
          MAQRS+EQSILVSPS S+RLLSDKANSN CFLGWW VFAP+SKSSGLCW RLA FYL FR
Sbjct: 1  MAQRSEEQSILVSPSNSERLLSDKANSNLCFLGWWTVFAPRSKSSGLCWNRLAEFYLPFR 60

Query: 64 TSSANPRLGGITK 77
          +SSANP LG  T+
Sbjct: 61 SSSANPSLGDQTE 73

[Close]
BLAST of CsaV3_6G000980 vs. NCBI nr
Match: KAG7025973.1 (BAG family molecular chaperone regulator 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-05
Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 0 

Query: 4  MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKS-KSSGLCWIRLAGF 59
          MAQ   + S L+S S  DR  SDK N N  FLGWW VFAP S KSSGLC  RL GF
Sbjct: 1  MAQIFTKSSNLISLSSLDRSKSDKRNLNLRFLGWWTVFAPISIKSSGLCRNRLVGF 56

[Close]
BLAST of CsaV3_6G000980 vs. ExPASy TrEMBL
Match: A0A0A0K7J3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.3e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 4   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63
           MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR
Sbjct: 1   MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 60

Query: 64  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 104
           TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK
Sbjct: 61  TSSANPRLGGITKILRIVLAEQAYYLSCKPIGSFCGLQIK 100

[Close]
BLAST of CsaV3_6G000980 vs. ExPASy TrEMBL
Match: A0A5D3CR26 (BAG family molecular chaperone regulator 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00220 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 0 

Query: 4  MAQRSQEQSILVSPSISDRLLSDKANSNFCFLGWWAVFAPKSKSSGLCWIRLAGFYLLFR 63
          MAQRS+EQSILVSPS S+RLLSDKANSN CFLGWW VFAP+SKSSGLCW RLA FYL FR
Sbjct: 1  MAQRSEEQSILVSPSNSERLLSDKANSNLCFLGWWTVFAPRSKSSGLCWNRLAEFYLPFR 60

Query: 64 TSSANPRLGGITK 77
          +SSANP LG  T+
Sbjct: 61 SSSANPSLGDQTE 73

The following BLAST results are available for this feature:
BLAST of CsaV3_6G000980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45705.21.6e-51100.00hypothetical protein Csa_004938 [Cucumis sativus][more]
TYK14025.13.7e-2480.82BAG family molecular chaperone regulator 6 [Cucumis melo var. makuwa][more]
KAG7025973.16.6e-0560.71BAG family molecular chaperone regulator 6 [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CsaV3_6G000980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G000980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7J37.3e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006900 PE=4 SV=1[more]
A0A5D3CR261.8e-2480.82BAG family molecular chaperone regulator 6 OS=Cucumis melo var. makuwa OX=119469... [more]
BLAST of CsaV3_6G000980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G000980.1CsaV3_6G000980.1mRNA