CsaV3_5G040590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G040590
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 31897623 .. 31898064 (-)
RNA-Seq ExpressionCsaV3_5G040590
SyntenyCsaV3_5G040590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTCTTATAGTTACATTATAATAAGTTCAGATCTTGTTCTTGTTGGGAGGTTTCCTAACAAATTTGTATCAGAGCAACAACCTGTGTGAGAATTGGAAAAATGGTGCAAAAAGGGATGAAAAAACGGCTAAATGTGATTGGTCAAGAACGTGCTGGAATTGTATGAATGTGCTAGCGATTGAGGAGAAGTTGAGATCCTTGGCTAGGAGCGTTGAGTAATTGAGCATTCAAATGGAGGAACAGCACTTCACAACAAATGAAATTAGACATTTACTGATTGGTCATCACGCGTTTGGATCATTGTTAGTGGACGAGTCGAGCGAAGTAAAGAAGGATGACGAAGAATTAGGAGAAACTCCAATGTTGGTCAAAGAAGTGTGGAAAATAGAGACAGATCAGAACAAAACAAAAGAAAGCAAGGAGAAGTCGGTGAAGACTTGA

mRNA sequence

ATGGAGGAACAGCACTTCACAACAAATGAAATTAGACATTTACTGATTGGTCATCACGCGTTTGGATCATTGTTAGTGGACGAGTCGAGCGAAGTAAAGAAGGATGACGAAGAATTAGGAGAAACTCCAATGTTGGTCAAAGAAGTGTGGAAAATAGAGACAGATCAGAACAAAACAAAAGAAAGCAAGGAGAAGTCGGTGAAGACTTGA

Coding sequence (CDS)

ATGGAGGAACAGCACTTCACAACAAATGAAATTAGACATTTACTGATTGGTCATCACGCGTTTGGATCATTGTTAGTGGACGAGTCGAGCGAAGTAAAGAAGGATGACGAAGAATTAGGAGAAACTCCAATGTTGGTCAAAGAAGTGTGGAAAATAGAGACAGATCAGAACAAAACAAAAGAAAGCAAGGAGAAGTCGGTGAAGACTTGA

Protein sequence

MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETDQNKTKESKEKSVKT*
Homology
[Close]
BLAST of CsaV3_5G040590 vs. NCBI nr
Match: KGN52728.1 (hypothetical protein Csa_009183 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 5.8e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETDQNKTK 60
          MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETDQNKTK
Sbjct: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETDQNKTK 60

Query: 61 ESKEKSVKT 70
          ESKEKSVKT
Sbjct: 61 ESKEKSVKT 69

[Close]
BLAST of CsaV3_5G040590 vs. NCBI nr
Match: KAA0062483.1 (hypothetical protein E6C27_scaffold130G00770 [Cucumis melo var. makuwa] >TYK27401.1 hypothetical protein E5676_scaffold325G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETD----- 60
          M EQ  TT +IR LLI  HAF S+L +ES E  K+DEE  ET  LVKE+ KIETD     
Sbjct: 1  MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHN 60

Query: 61 --------QNKTKESKE 65
                  QNKTKE K+
Sbjct: 61 RSKFSKINQNKTKEGKK 77

[Close]
BLAST of CsaV3_5G040590 vs. ExPASy TrEMBL
Match: A0A0A0KT09 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652820 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.8e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETDQNKTK 60
          MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETDQNKTK
Sbjct: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETDQNKTK 60

Query: 61 ESKEKSVKT 70
          ESKEKSVKT
Sbjct: 61 ESKEKSVKT 69

[Close]
BLAST of CsaV3_5G040590 vs. ExPASy TrEMBL
Match: A0A5A7V341 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00850 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.7e-06
Identity = 40/77 (51.95%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETD----- 60
          M EQ  TT +IR LLI  HAF S+L +ES E  K+DEE  ET  LVKE+ KIETD     
Sbjct: 1  MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHN 60

Query: 61 --------QNKTKESKE 65
                  QNKTKE K+
Sbjct: 61 RSKFSKINQNKTKEGKK 77

The following BLAST results are available for this feature:
BLAST of CsaV3_5G040590 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52728.15.8e-29100.00hypothetical protein Csa_009183 [Cucumis sativus][more]
KAA0062483.12.0e-0551.95hypothetical protein E6C27_scaffold130G00770 [Cucumis melo var. makuwa] >TYK2740... [more]
BLAST of CsaV3_5G040590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G040590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT092.8e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652820 PE=4 SV=1[more]
A0A5A7V3419.7e-0651.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_5G040590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G040590.1CsaV3_5G040590.1mRNA