CsaV3_5G040240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G040240
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionSCR-like 10
Locationchr5: 31665182 .. 31665397 (-)
RNA-Seq ExpressionCsaV3_5G040240
SyntenyCsaV3_5G040240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

mRNA sequence

ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

Coding sequence (CDS)

ATGTATGTATGGCGGGGGGATGCAGGTTCTGATCAGGATCAACCAAGAACATGTCCAGTGAAATTTGCATCAACAGGGACATGTCAAGAGCCATATGGAACAGCAGGATGTTACGACGAAGTCATGGGAAAATATGGAAATTTCCCACCAAAGGACTGTCAATGCATTCCTAATGGCGATAATTCTCGCTTTTGCCAATGCAATATCTATTGTTAA

Protein sequence

MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC*
Homology
BLAST of CsaV3_5G040240 vs. NCBI nr
Match: KGN52689.1 (hypothetical protein Csa_008701 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60
          MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD
Sbjct: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60

Query: 61 NSRFCQCNIYC 72
          NSRFCQCNIYC
Sbjct: 61 NSRFCQCNIYC 71

BLAST of CsaV3_5G040240 vs. NCBI nr
Match: KGN52690.1 (hypothetical protein Csa_007932 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 9.5e-19
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

BLAST of CsaV3_5G040240 vs. NCBI nr
Match: KAG6607502.1 (hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 72
          DQ +TCP +F STGTC +  G + CY E M ++GN PPK C+CIP G +SR C+CN  C
Sbjct: 27 DQSKTCPEEFHSTGTCGDWTGVSECYSESMARHGNIPPKGCECIPKGADSRICRCNAVC 85

BLAST of CsaV3_5G040240 vs. NCBI nr
Match: KAG6607501.1 (hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 72
          DQ +TCP +F STGTC    G + CY E M + GN PPK C+CIP+G +SR C+CN+ C
Sbjct: 30 DQSKTCPQQFRSTGTCAGWIGISECYSESMARNGNIPPKGCKCIPDGVDSRICRCNVVC 88

BLAST of CsaV3_5G040240 vs. ExPASy TrEMBL
Match: A0A0A0KUV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.2e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0

Query: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60
          MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD
Sbjct: 1  MYVWRGDAGSDQDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGD 60

Query: 61 NSRFCQCNIYC 72
          NSRFCQCNIYC
Sbjct: 61 NSRFCQCNIYC 71

BLAST of CsaV3_5G040240 vs. ExPASy TrEMBL
Match: A0A0A0KSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 12 QDQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71
          +DQ +TCPVKFASTGTC  P+G + CY E M KYGN PPK C+CIP+G NSRFC CNI C
Sbjct: 29 EDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYGNIPPKGCECIPDGANSRFCLCNIIC 88

BLAST of CsaV3_5G040240 vs. TAIR 10
Match: AT4G15735.1 (SCR-like 10 )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 20/62 (32.26%), Postives = 34/62 (54.84%), Query Frame = 0

Query: 13  DQPRTCPVKFASTGTCQEPYGT--AGCYDEVMG-KYGNFPPKDCQCIPNGDNSRFCQCNI 72
           +QPR C  +    G+C +  GT    C+ + +G +  +  PK+C C P  +N R C+C++
Sbjct: 40  NQPRYCRSRQVFDGSCTD-RGTPRTTCFLDFLGARSASEMPKNCDCTPQPNNKRLCECSV 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52689.11.1e-38100.00hypothetical protein Csa_008701 [Cucumis sativus][more]
KGN52690.19.5e-1968.33hypothetical protein Csa_007932 [Cucumis sativus][more]
KAG6607502.12.3e-1254.24hypothetical protein SDJN03_00844, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607501.15.0e-1254.24hypothetical protein SDJN03_00843, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUV45.2e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650540 PE=4 SV=1[more]
A0A0A0KSV34.6e-1968.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G15735.11.4e-0432.26SCR-like 10 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010682Plant self-incompatibility responsePFAMPF06876SCRLcoord: 14..68
e-value: 5.1E-5
score: 23.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G040240.1CsaV3_5G040240.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction