CsaV3_5G039880 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G039880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 31457171 .. 31457389 (-)
RNA-Seq Expression	CsaV3_5G039880
Synteny	CsaV3_5G039880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAAAGATTTCATGGAACCTTCAAGAAAGCTTACTCACCAAAACTCAACAAATCTCCGACGAAACTTGACGGCACAACGGGCGGCACAGCTAACAAACTCCAACAGCGGCGAGGACCAGAAGAGAGAGAGAGAAATGGTAGCGAAGGGGAGAGAGAGCGCTGGCGGCAGAAGGCCGGCGGAGCAACGGCGTGCGGCGGGTGCAACCCTCGGTGA

mRNA sequence

ATGGGTAAAAGATTTCATGGAACCTTCAAGAAAGCTTACTCACCAAAACTCAACAAATCTCCGACGAAACTTGACGGCACAACGGGCGGCACAGCTAACAAACTCCAACAGCGGCGAGGACCAGAAGAGAGAGAGAGAAATGGTAGCGAAGGGGAGAGAGAGCGCTGGCGGCAGAAGGCCGGCGGAGCAACGGCGTGCGGCGGGTGCAACCCTCGGTGA

Coding sequence (CDS)

ATGGGTAAAAGATTTCATGGAACCTTCAAGAAAGCTTACTCACCAAAACTCAACAAATCTCCGACGAAACTTGACGGCACAACGGGCGGCACAGCTAACAAACTCCAACAGCGGCGAGGACCAGAAGAGAGAGAGAGAAATGGTAGCGAAGGGGAGAGAGAGCGCTGGCGGCAGAAGGCCGGCGGAGCAACGGCGTGCGGCGGGTGCAACCCTCGGTGA

Protein sequence

MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGERERWRQKAGGATACGGCNPR*

Homology

[Close]

BLAST of CsaV3_5G039880 vs. NCBI nr
Match: KGN52655.1 (hypothetical protein Csa_009276 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 3.4e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGERERWRQKA 60
          MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGERERWRQKA
Sbjct: 1  MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGERERWRQKA 60

Query: 61 GGATACGGCNPR 73
          GGATACGGCNPR
Sbjct: 61 GGATACGGCNPR 72

[Close]

BLAST of CsaV3_5G039880 vs. ExPASy TrEMBL
Match: A0A0A0KSS6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649260 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.6e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGERERWRQKA 60
          MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGERERWRQKA
Sbjct: 1  MGKRFHGTFKKAYSPKLNKSPTKLDGTTGGTANKLQQRRGPEERERNGSEGERERWRQKA 60

Query: 61 GGATACGGCNPR 73
          GGATACGGCNPR
Sbjct: 61 GGATACGGCNPR 72

The following BLAST results are available for this feature:

BLAST of CsaV3_5G039880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52655.1	3.4e-32	100.00	hypothetical protein Csa_009276 [Cucumis sativus]	[more]

BLAST of CsaV3_5G039880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G039880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSS6	1.6e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649260 PE=4 SV=1	[more]

BLAST of CsaV3_5G039880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G039880.1	CsaV3_5G039880.1	mRNA