CsaV3_5G039350 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G039350
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr5: 31132138 .. 31133860 (+)
RNA-Seq Expression	CsaV3_5G039350
Synteny	CsaV3_5G039350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTTGGCTGCTTCCACCGCCGCCGCCTCCCTCGGCGTCTCTGAAATGCTAAGAAACCCTCTTAGCTTCTCCTCCAGGTCCGCTCCCTCCCCTTCTACCCCCGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCCGCAGCACCTGCCAAGCCAAAGCCCTCTGCTGCCTCTCCCGTCAACGACGAGCTCGCCAAGTGGTATGGTAAGTCCACTTCCACCCATTTACATCTTTCCACTCCAATAAAAATGGTTCGCTCGAAATTAATTATATACCAAGTTTATCGAGTTTTCTTTTTGTAATATTGAATTATTTTAAGTATTTTGTTTGAATTTAATTACTTCTTTTTCAAGTTCAACATAACTGCCAGAGCAAGAAATGGGATGATTTCTTTTACAACAAGTCTCTAATGGTCATATCTTTTGTTTGTACATGTTTTCTCAACTTGATGTTAACTATGCTCTTCGACACTAATTTAGGGCCGGATAGAAGGATTTTCTTGCCAGATGGTTTGTTGGACCGATCCGAGATCCCCGAGTACTTGAACGGAGAAGTCCCCGGCGAGTACGGTTCAATTTTTTTTTATCCTCCTCATCATTGTAGTTCTATGTTTAGGCTCCAATGGAAATTGAACTCTAACACATTGTTTTATTTGGTTTGTTACAGCTATGGTTATGACCCCTTTGGACTCAGCAAGAAGCCCGAAGACTTCACCAAGTAAGTAAATCTTTATTAATCTACAAAACGAAGAGTAATTTGTTCAATTGTTATATGAAGGCTTAGTGAAAAAATGGTGCTTTTTGTGTTTTTGGCATGCAGATACCAAGCATTTGAATTGATTCATGCAAGATGGGCTATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGCGCTAACTGTGGCCCCGAAGCTGTCTGGTTCAAGGTCGATTTTCATCTCTATTTAGACTCCGATTGATAATGATAGTTGATTCTCATCTCATGAAAACTCGTTTAATAGTTTAGTGTCTTTTCAAACAAACAAATAAATATAGAAATGAGAATCTGTTTGGGATAATAATCTAACTTATTTTTGTTTTTAGAATTCGACTAGAAAAGGGAGATGACGAACAAAATGTATATAAGAAATTAACTTAAACCTAAAGAAAACGAAAAATAGTTATCATACATCTGATTTGGATGTGAACTATTGGCCTATACAGACCGGAGCTCTACTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATACTACAGAATCATCAACGGCTTGGTACGTCATACATTCTATAATTACTTTACATGATATCAGATCAAGAGATTCTTCTATTCATACTCTTCTAACGATATTTTCTTGGACGTTAATATTGTAGAACTTTGAGGACAAGCTTCACCCAGGAGGGCCATTCGACCCATTGGGGTTAGCAGACGACCCAGACCAGGCAGCAATCTTGAAGGTGAAAGAGATCAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAATTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAATCTGCTCACAGTCATTTCAGGGAATGCTGAAAGAGTTCCAACTCTTTAA

mRNA sequence

ATGGCTTCTTTGGCTGCTTCCACCGCCGCCGCCTCCCTCGGCGTCTCTGAAATGCTAAGAAACCCTCTTAGCTTCTCCTCCAGGTCCGCTCCCTCCCCTTCTACCCCCGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCCGCAGCACCTGCCAAGCCAAAGCCCTCTGCTGCCTCTCCCGTCAACGACGAGCTCGCCAAGTGGTATGGGCCGGATAGAAGGATTTTCTTGCCAGATGGTTTGTTGGACCGATCCGAGATCCCCGAGTACTTGAACGGAGAAGTCCCCGGCGACTATGGTTATGACCCCTTTGGACTCAGCAAGAAGCCCGAAGACTTCACCAAATACCAAGCATTTGAATTGATTCATGCAAGATGGGCTATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGCGCTAACTGTGGCCCCGAAGCTGTCTGGTTCAAGACCGGAGCTCTACTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATACTACAGAATCATCAACGGCTTGAACTTTGAGGACAAGCTTCACCCAGGAGGGCCATTCGACCCATTGGGGTTAGCAGACGACCCAGACCAGGCAGCAATCTTGAAGGTGAAAGAGATCAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAATTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAATCTGCTCACAGTCATTTCAGGGAATGCTGAAAGAGTTCCAACTCTTTAA

Coding sequence (CDS)

ATGGCTTCTTTGGCTGCTTCCACCGCCGCCGCCTCCCTCGGCGTCTCTGAAATGCTAAGAAACCCTCTTAGCTTCTCCTCCAGGTCCGCTCCCTCCCCTTCTACCCCCGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCCGCAGCACCTGCCAAGCCAAAGCCCTCTGCTGCCTCTCCCGTCAACGACGAGCTCGCCAAGTGGTATGGGCCGGATAGAAGGATTTTCTTGCCAGATGGTTTGTTGGACCGATCCGAGATCCCCGAGTACTTGAACGGAGAAGTCCCCGGCGACTATGGTTATGACCCCTTTGGACTCAGCAAGAAGCCCGAAGACTTCACCAAATACCAAGCATTTGAATTGATTCATGCAAGATGGGCTATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGCGCTAACTGTGGCCCCGAAGCTGTCTGGTTCAAGACCGGAGCTCTACTTCTTGATGGAAACACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCCGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATACTACAGAATCATCAACGGCTTGAACTTTGAGGACAAGCTTCACCCAGGAGGGCCATTCGACCCATTGGGGTTAGCAGACGACCCAGACCAGGCAGCAATCTTGAAGGTGAAAGAGATCAAGAATGGAAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAATTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAATCTGCTCACAGTCATTTCAGGGAATGCTGAAAGAGTTCCAACTCTTTAA

Protein sequence

MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL*

Homology

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BLAST of CsaV3_5G039350 vs. NCBI nr
Match: XP_004141516.1 (chlorophyll a-b binding protein CP26, chloroplastic [Cucumis sativus] >KGN52596.1 hypothetical protein Csa_009413 [Cucumis sativus])

HSP 1 Score: 583.6 bits (1503), Expect = 9.6e-163
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAA 60
           MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAA
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAA 60

Query: 61  SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQA 120
           SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQA
Sbjct: 61  SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQA 120

Query: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLI 180
           FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLI
Sbjct: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLI 180

Query: 181 VAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLA 240
           VAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLA
Sbjct: 181 VAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLA 240

Query: 241 MFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           MFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 MFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288

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BLAST of CsaV3_5G039350 vs. NCBI nr
Match: XP_008459494.1 (PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Cucumis melo])

HSP 1 Score: 568.5 bits (1464), Expect = 3.2e-158
Identity = 282/289 (97.58%), Postives = 286/289 (98.96%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSA-PSPSTPATFKTVALFGKKPAAPAKPKPSA 60
           MASLAASTAAASLGVSEMLRNPLSFSSRSA PS S+PATFKTVALFGKKPAAP+KPKP+ 
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSAPPSASSPATFKTVALFGKKPAAPSKPKPAP 60

Query: 61  ASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQ 120
           ASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+KYQ
Sbjct: 61  ASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQ 120

Query: 121 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL 180
           AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL
Sbjct: 121 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL 180

Query: 181 IVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRL 240
           IVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRL
Sbjct: 181 IVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRL 240

Query: 241 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289

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BLAST of CsaV3_5G039350 vs. NCBI nr
Match: XP_038889943.1 (chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida])

HSP 1 Score: 568.2 bits (1463), Expect = 4.2e-158
Identity = 282/291 (96.91%), Postives = 286/291 (98.28%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60
           MASLAASTAAASLGVSEMLRNPLSF   S+RSAPS S+PATFKTVALFGKKPAAP+KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKP 60

Query: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120
           SA SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 291

[Close]

BLAST of CsaV3_5G039350 vs. NCBI nr
Match: XP_022973438.1 (chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima])

HSP 1 Score: 548.5 bits (1412), Expect = 3.4e-152
Identity = 273/291 (93.81%), Postives = 278/291 (95.53%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60
           MASLAASTAAASLGVSEMLRNPLS    S+RSA S S+P T K VA+FGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120
           SA SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of CsaV3_5G039350 vs. NCBI nr
Match: KAG7037190.1 (Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 547.7 bits (1410), Expect = 5.8e-152
Identity = 273/291 (93.81%), Postives = 277/291 (95.19%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60
           MASLAASTAAASLGVSEMLRNPLSF   S+RSA S S+P T K VA+FGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120
           SA SP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy Swiss-Prot
Match: Q9XF89 (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB5 PE=1 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 4.0e-135
Identity = 237/281 (84.34%), Postives = 252/281 (89.68%), Query Frame = 0


Query: 11  ASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASPVNDEL 70
           ASLGVSEML  PL+F   S  SAP  S+P+TFKTVALF KK  APAK K  A S  +DEL
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSK--AVSETSDEL 61

Query: 71  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHAR 130
           AKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F KYQAFELIHAR
Sbjct: 62  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 121

Query: 131 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEV 190
           WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NIPINL++AV+AEV
Sbjct: 122 WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEV 181

Query: 191 VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGF 250
           VL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLGF
Sbjct: 182 VLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 241

Query: 251 YFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           + QAYVTGEGPVENLAKHLSDPFGNNLLTVI+G AER PTL
Sbjct: 242 FIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy Swiss-Prot
Match: P12330 (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB1R PE=2 SV=2)

HSP 1 Score: 223.0 bits (567), Expect = 4.3e-57
Identity = 136/270 (50.37%), Postives = 168/270 (62.22%), Query Frame = 0


Query: 9   AAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASPVNDELA 68
           AAA++ +S  +       +R+APS S+ A F    +  +K AA  KP  S+ SP      
Sbjct: 2   AAATMALSSPV------MARAAPSTSS-ALFGEARITMRKTAAKPKPAASSGSP------ 61

Query: 69  KWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARW 128
            WYG DR ++L  G L   E P YL GE PGDYG+D  GLS  PE F K +  E+IH+RW
Sbjct: 62  -WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 121

Query: 129 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAVIA- 188
           AMLGA G + PE   + G   G EAVWFK G+ +     L+Y GN   I    I+A+ A 
Sbjct: 122 AMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAV 181

Query: 189 EVVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFA 248
           +VVL+G  E YRI  G   E  D L+PGG FDPLGLADDP+  A LKVKEIKNGRLAMF+
Sbjct: 182 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 241

Query: 249 MLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
           M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 242 MFGFFVQAIVTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy Swiss-Prot
Match: P27497 (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays OX=4577 GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 5.6e-57
Identity = 130/263 (49.43%), Postives = 164/263 (62.36%), Query Frame = 0


Query: 16  SEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASPVNDELAKWYGPDR 75
           S M  +  +F+ ++   PS  + F    +  +K AA AKP  S+ SP       WYGPDR
Sbjct: 4   STMALSSTAFAGKAVNVPS--SLFGEARVTMRKTAAKAKPAASSGSP-------WYGPDR 63

Query: 76  RIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAG 135
            ++L  G L   E P YL GE PGDYG+D  GLS  PE F K +  E+IH+RWAMLGA G
Sbjct: 64  VLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 123

Query: 136 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNN--IPINLIVAVIA-EVVLVGG 195
            + PE   + G   G EAVWFK G+ +     L+Y GN   I    I+A+ A +VVL+G 
Sbjct: 124 CVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 183

Query: 196 AEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQ 255
            E YR+  G   E  D L+PGG FDPLGLADDP+  A +KVKE+KNGRLAMF+M GF+ Q
Sbjct: 184 IEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQ 243

Query: 256 AYVTGEGPVENLAKHLSDPFGNN 274
           A VTG+GP+ENLA HL+DP  NN
Sbjct: 244 AIVTGKGPLENLADHLADPVNNN 253

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy Swiss-Prot
Match: P12331 (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CAB2R PE=2 SV=2)

HSP 1 Score: 220.7 bits (561), Expect = 2.1e-56
Identity = 123/226 (54.42%), Postives = 148/226 (65.49%), Query Frame = 0


Query: 53  AKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKP 112
           AKPKP+A+       + WYG DR ++L  G L   E P YL GE PGDYG+D  GLS  P
Sbjct: 34  AKPKPAASG------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 93

Query: 113 EDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 172
           E F K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct: 94  ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 153

Query: 173 NN--IPINLIVAVIA-EVVLVGGAEYYRIINGLNFE--DKLHPGGPFDPLGLADDPDQAA 232
           N   I    I+A+ A +VVL+G  E YRI  G   E  D L+PGG FDPLGLADDP+  A
Sbjct: 154 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 213

Query: 233 ILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
            LKVKEIKNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy Swiss-Prot
Match: P27517 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta OX=3047 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.1e-56
Identity = 118/238 (49.58%), Postives = 148/238 (62.18%), Query Frame = 0


Query: 42  VALFGKKPAAPAKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDY 101
           +A  G K     + +    + V     ++YGPDR  FL  G    ++ PEYL GE PGDY
Sbjct: 5   IARSGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDY 64

Query: 102 GYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 161
           G+D  GLS  P+ F +Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA 
Sbjct: 65  GWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQ 124

Query: 162 LLDGNTLNYFGNNIPI---NLIVAVIAEVVLVGGAEYYRIING----LNFEDKLHPGGPF 221
           +     LNY GN   I   ++I  +  +VVL+G AE YR   G    L+  D L+PGGPF
Sbjct: 125 IFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPF 184

Query: 222 DPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGN 273
           DPLGLADDPD  A LKVKEIKNGRLAMF+ LGF+ QA VTG+GPV+NL  HL+DP  N
Sbjct: 185 DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy TrEMBL
Match: A0A0A0KXR5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G646700 PE=3 SV=1)

HSP 1 Score: 583.6 bits (1503), Expect = 4.7e-163
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAA 60
           MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAA
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAA 60

Query: 61  SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQA 120
           SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQA
Sbjct: 61  SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQA 120

Query: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLI 180
           FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLI
Sbjct: 121 FELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLI 180

Query: 181 VAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLA 240
           VAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLA
Sbjct: 181 VAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLA 240

Query: 241 MFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           MFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 MFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy TrEMBL
Match: A0A1S3CBI9 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498611 PE=3 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 1.5e-158
Identity = 282/289 (97.58%), Postives = 286/289 (98.96%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSA-PSPSTPATFKTVALFGKKPAAPAKPKPSA 60
           MASLAASTAAASLGVSEMLRNPLSFSSRSA PS S+PATFKTVALFGKKPAAP+KPKP+ 
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSSRSAPPSASSPATFKTVALFGKKPAAPSKPKPAP 60

Query: 61  ASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQ 120
           ASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+KYQ
Sbjct: 61  ASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQ 120

Query: 121 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL 180
           AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL
Sbjct: 121 AFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINL 180

Query: 181 IVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRL 240
           IVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRL
Sbjct: 181 IVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRL 240

Query: 241 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL
Sbjct: 241 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy TrEMBL
Match: A0A6J1ID20 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471983 PE=3 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.7e-152
Identity = 273/291 (93.81%), Postives = 278/291 (95.53%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60
           MASLAASTAAASLGVSEMLRNPLS    S+RSA S S+P T K VA+FGKKPAA  KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSLSGASARSASSASSPVTSKIVAIFGKKPAAAPKPKP 60

Query: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120
           SA SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV+AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVVAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy TrEMBL
Match: A0A6J1DTI7 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022982 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 6.3e-152
Identity = 275/291 (94.50%), Postives = 278/291 (95.53%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60
           MASLAASTAAASLGVSEMLRNPLSF   S RSAPS S+  T KTVALFGKKPAA AKP  
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFGGGSPRSAPSASSSVTVKTVALFGKKPAAKAKPS- 60

Query: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120
           +A SPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  AAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGN ERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNVERVPTL 290

[Close]

BLAST of CsaV3_5G039350 vs. ExPASy TrEMBL
Match: A0A6J1EWI5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111438899 PE=3 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 6.3e-152
Identity = 273/291 (93.81%), Postives = 276/291 (94.85%), Query Frame = 0


Query: 1   MASLAASTAAASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKP 60
           MASLAASTAAASLGVSEMLRNPLSF   S+RSA S S+P T K VALFGKKPA   KPKP
Sbjct: 1   MASLAASTAAASLGVSEMLRNPLSFSGASARSASSASSPVTSKIVALFGKKPAPAPKPKP 60

Query: 61  SAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTK 120
           SA SP NDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDF+K
Sbjct: 61  SAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSK 120

Query: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180
           YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI
Sbjct: 121 YQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPI 180

Query: 181 NLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240
           NLIVAV AEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG
Sbjct: 181 NLIVAVAAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNG 240

Query: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPF NNLLTVISGNAERVPTL
Sbjct: 241 RLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERVPTL 291

[Close]

BLAST of CsaV3_5G039350 vs. TAIR 10
Match: AT4G10340.1 (light harvesting complex of photosystem II 5 )

HSP 1 Score: 482.3 bits (1240), Expect = 2.8e-136
Identity = 237/281 (84.34%), Postives = 252/281 (89.68%), Query Frame = 0


Query: 11  ASLGVSEMLRNPLSF---SSRSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASPVNDEL 70
           ASLGVSEML  PL+F   S  SAP  S+P+TFKTVALF KK  APAK K  A S  +DEL
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSK--AVSETSDEL 61

Query: 71  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHAR 130
           AKWYGPDRRIFLPDGLLDRSEIPEYLNGEV GDYGYDPFGL KKPE+F KYQAFELIHAR
Sbjct: 62  AKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHAR 121

Query: 131 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEV 190
           WAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFG NIPINL++AV+AEV
Sbjct: 122 WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEV 181

Query: 191 VLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGF 250
           VL+GGAEYYRI NGL+FEDKLHPGGPFDPLGLA DP+Q A+LKVKEIKNGRLAMFAMLGF
Sbjct: 182 VLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGF 241

Query: 251 YFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 289
           + QAYVTGEGPVENLAKHLSDPFGNNLLTVI+G AER PTL
Sbjct: 242 FIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280

[Close]

BLAST of CsaV3_5G039350 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-54
Identity = 116/227 (51.10%), Postives = 143/227 (63.00%), Query Frame = 0


Query: 53  AKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKP 112
           AKPK  + SP       WYG DR  +L        E P YL GE PGDYG+D  GLS  P
Sbjct: 40  AKPKGPSGSP-------WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 99

Query: 113 EDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 172
           E F + +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct: 100 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 159

Query: 173 NN--IPINLIVAVIA-EVVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQA 232
           N   +    I+A+ A +V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  
Sbjct: 160 NPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 219

Query: 233 AILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
           A LKVKE+KNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of CsaV3_5G039350 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-54
Identity = 116/227 (51.10%), Postives = 143/227 (63.00%), Query Frame = 0


Query: 53  AKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKP 112
           AKPK  + SP       WYG DR  +L        E P YL GE PGDYG+D  GLS  P
Sbjct: 40  AKPKGPSGSP-------WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 99

Query: 113 EDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 172
           E F + +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct: 100 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 159

Query: 173 NN--IPINLIVAVIA-EVVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQA 232
           N   +    I+A+ A +V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  
Sbjct: 160 NPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 219

Query: 233 AILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
           A LKVKE+KNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of CsaV3_5G039350 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-54
Identity = 116/227 (51.10%), Postives = 143/227 (63.00%), Query Frame = 0


Query: 53  AKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKP 112
           AKPK  + SP       WYG DR  +L        E P YL GE PGDYG+D  GLS  P
Sbjct: 40  AKPKGPSGSP-------WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 99

Query: 113 EDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 172
           E F + +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct: 100 ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 159

Query: 173 NN--IPINLIVAVIA-EVVLVGGAEYYRII-NGL--NFEDKLHPGGPFDPLGLADDPDQA 232
           N   +    I+A+ A +V+L+G  E YR+  NG     ED L+PGG FDPLGLA DP+  
Sbjct: 160 NPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAF 219

Query: 233 AILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
           A LKVKE+KNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 220 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

[Close]

BLAST of CsaV3_5G039350 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 207.2 bits (526), Expect = 1.7e-53
Identity = 114/227 (50.22%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 53  AKPKPSAASPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKP 112
           AKPK  + SP       WYG DR  +L        E P YL GE PGDYG+D  GLS  P
Sbjct: 38  AKPKGPSGSP-------WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 97

Query: 113 EDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 172
           E F + +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct: 98  ETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 157

Query: 173 NN--IPINLIVAVIA-EVVLVGGAEYYRIING---LNFEDKLHPGGPFDPLGLADDPDQA 232
           N   +    I+A+ A +V+L+G  E YR+         ED L+PGG FDPLGLA DP+  
Sbjct: 158 NPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAF 217

Query: 233 AILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNN 274
           A LKVKE+KNGRLAMF+M GF+ QA VTG+GP+ENLA HL+DP  NN
Sbjct: 218 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

The following BLAST results are available for this feature:

BLAST of CsaV3_5G039350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141516.1	9.6e-163	100.00	chlorophyll a-b binding protein CP26, chloroplastic [Cucumis sativus] >KGN52596....	[more]
XP_008459494.1	3.2e-158	97.58	PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Cucumis melo]	[more]
XP_038889943.1	4.2e-158	96.91	chlorophyll a-b binding protein CP26, chloroplastic [Benincasa hispida]	[more]
XP_022973438.1	3.4e-152	93.81	chlorophyll a-b binding protein CP26, chloroplastic [Cucurbita maxima]	[more]
KAG7037190.1	5.8e-152	93.81	Chlorophyll a-b binding protein CP26, chloroplastic, partial [Cucurbita argyrosp...	[more]

BLAST of CsaV3_5G039350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF89	4.0e-135	84.34	Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P12330	4.3e-57	50.37	Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica...	[more]
P27497	5.6e-57	49.43	Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays OX=4577 GN=CAB-M9 ...	[more]
P12331	2.1e-56	54.42	Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica...	[more]
P27517	2.1e-56	49.58	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella ter...	[more]

BLAST of CsaV3_5G039350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXR5	4.7e-163	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3CBI9	1.5e-158	97.58	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1ID20	1.7e-152	93.81	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1DTI7	6.3e-152	94.50	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1EWI5	6.3e-152	93.81	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CsaV3_5G039350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10340.1	2.8e-136	84.34	light harvesting complex of photosystem II 5	[more]
AT1G29910.1	3.5e-54	51.10	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	3.5e-54	51.10	chlorophyll A/B-binding protein 2	[more]
AT1G29930.1	3.5e-54	51.10	chlorophyll A/B binding protein 1	[more]
AT2G34420.1	1.7e-53	50.22	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 90..251 e-value: 6.1E-46 score: 156.9
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 77..288 e-value: 1.2E-89 score: 301.5
None	No IPR available	PANTHER	PTHR21649:SF104	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 1..288
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 70..278
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G039350.1	CsaV3_5G039350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane