Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA
mRNA sequence
ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA
Coding sequence (CDS)
ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA
Protein sequence
MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH*
Homology
BLAST of CsaV3_5G039080 vs. NCBI nr
Match:
KGN52568.1 (hypothetical protein Csa_008927 [Cucumis sativus])
HSP 1 Score: 395.2 bits (1014), Expect = 3.0e-106
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD
Sbjct: 1 MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
Query: 61 SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM
Sbjct: 61 SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
Query: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 176
DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH
Sbjct: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 175
BLAST of CsaV3_5G039080 vs. NCBI nr
Match:
KAA0039382.1 (F-box protein [Cucumis melo var. makuwa] >TYK00570.1 F-box protein [Cucumis melo var. makuwa])
HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 0
Query: 1 MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
M +EVSDY+PFK WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 1 MADEVSDYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 60
Query: 61 IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 61 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 120
Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 167
BLAST of CsaV3_5G039080 vs. NCBI nr
Match:
XP_008459707.1 (PREDICTED: F-box protein At3g07870-like [Cucumis melo])
HSP 1 Score: 311.2 bits (796), Expect = 5.6e-81
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0
Query: 1 MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
M +E+S+Y+PFK WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 68 MADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 127
Query: 61 IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 128 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 187
Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 188 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 234
BLAST of CsaV3_5G039080 vs. NCBI nr
Match:
KAA0039383.1 (F-box protein [Cucumis melo var. makuwa] >TYK00571.1 F-box protein [Cucumis melo var. makuwa])
HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 121/167 (72.46%), Postives = 129/167 (77.25%), Query Frame = 0
Query: 1 MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
M EEVSDY+PFK WCNPKI+CVDID KTSSVASF F
Sbjct: 1 MEEEVSDYIPFKSIRWCNPKIRCVDIDHKTSSVASFGF---------------------- 60
Query: 61 IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
EGILNPMTNEF+EIP P+IELDVHC GFGFSPRTKQYKLFRTEPE+L NWKKCH
Sbjct: 61 ------EGILNPMTNEFMEIPQPEIELDVHCTGFGFSPRTKQYKLFRTEPEVLDNWKKCH 120
Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
Y M+IFTFDNGHKQWRHFKRLPF+VFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGHKQWRHFKRLPFLVFHHGQYLNGVIYWIGKKLEKEG 139
BLAST of CsaV3_5G039080 vs. NCBI nr
Match:
XP_004141601.1 (F-box protein At3g07870 [Cucumis sativus] >KGN52549.1 hypothetical protein Csa_008830 [Cucumis sativus])
HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 76/155 (49.03%), Postives = 97/155 (62.58%), Query Frame = 0
Query: 14 CNPKIQCVDIDPKTSSVASFRFEDD--WSSITIVNSCNGLLYICKFI-FDSLCEGILNPM 73
CN KI C+DID S V SF FEDD S+++IV+SC+ LL I K I D LCEGILNPM
Sbjct: 5 CNFKIHCIDID-TMSCVGSFGFEDDHNHSTVSIVSSCHALLLISKLIDTDDLCEGILNPM 64
Query: 74 TNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTF---DN 133
TNEF+E+P + + GFGF+P+TKQYKLFR + + + M+I F
Sbjct: 65 TNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTER---DRYEFYSIMEIMRFGDRSE 124
Query: 134 GHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEK 163
++WRHFK P HG YLNG+IYW+GK+ K
Sbjct: 125 TKEEWRHFKCPPISFDDHGAYLNGVIYWMGKEKGK 155
BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match:
A0A0A0KSN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643960 PE=4 SV=1)
HSP 1 Score: 395.2 bits (1014), Expect = 1.4e-106
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD
Sbjct: 1 MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
Query: 61 SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM
Sbjct: 61 SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
Query: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 176
DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH
Sbjct: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 175
BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match:
A0A5A7T7C6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850 PE=4 SV=1)
HSP 1 Score: 313.5 bits (802), Expect = 5.5e-82
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 0
Query: 1 MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
M +EVSDY+PFK WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 1 MADEVSDYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 60
Query: 61 IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 61 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 120
Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 167
BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match:
A0A1S3CB99 (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)
HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0
Query: 1 MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
M +E+S+Y+PFK WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 68 MADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 127
Query: 61 IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 128 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 187
Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 188 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 234
BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match:
A0A5A7T8U6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001870 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 7.2e-66
Identity = 121/167 (72.46%), Postives = 129/167 (77.25%), Query Frame = 0
Query: 1 MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
M EEVSDY+PFK WCNPKI+CVDID KTSSVASF F
Sbjct: 1 MEEEVSDYIPFKSIRWCNPKIRCVDIDHKTSSVASFGF---------------------- 60
Query: 61 IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
EGILNPMTNEF+EIP P+IELDVHC GFGFSPRTKQYKLFRTEPE+L NWKKCH
Sbjct: 61 ------EGILNPMTNEFMEIPQPEIELDVHCTGFGFSPRTKQYKLFRTEPEVLDNWKKCH 120
Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
Y M+IFTFDNGHKQWRHFKRLPF+VFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGHKQWRHFKRLPFLVFHHGQYLNGVIYWIGKKLEKEG 139
BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match:
A0A0A0KUJ1 (FBA_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 5.4e-29
Identity = 76/155 (49.03%), Postives = 97/155 (62.58%), Query Frame = 0
Query: 14 CNPKIQCVDIDPKTSSVASFRFEDD--WSSITIVNSCNGLLYICKFI-FDSLCEGILNPM 73
CN KI C+DID S V SF FEDD S+++IV+SC+ LL I K I D LCEGILNPM
Sbjct: 5 CNFKIHCIDID-TMSCVGSFGFEDDHNHSTVSIVSSCHALLLISKLIDTDDLCEGILNPM 64
Query: 74 TNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTF---DN 133
TNEF+E+P + + GFGF+P+TKQYKLFR + + + M+I F
Sbjct: 65 TNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTER---DRYEFYSIMEIMRFGDRSE 124
Query: 134 GHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEK 163
++WRHFK P HG YLNG+IYW+GK+ K
Sbjct: 125 TKEEWRHFKCPPISFDDHGAYLNGVIYWMGKEKGK 155
BLAST of CsaV3_5G039080 vs. TAIR 10
Match:
AT1G55070.1 (F-box and associated interaction domains-containing protein )
HSP 1 Score: 43.5 bits (101), Expect = 2.0e-04
Identity = 27/132 (20.45%), Postives = 60/132 (45.45%), Query Frame = 0
Query: 44 IVNSCNGLLYICKFIFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLF 103
I++S +GL+ + I + I NP+T ++V +P + ++ G+ P K++K+
Sbjct: 129 ILSSVHGLVCYHRKIKNDTVFVIYNPITGQYVTLPILEAHATINYFAIGYDPINKRFKVL 188
Query: 104 RTEPEILPNWKKCHYRMDIFTFDNGHKQ--WRHFK-RLPFVV--FHHGQYLNGIIYWIGK 163
++ + + TF+ G + WR + R + +H G + G++Y+
Sbjct: 189 CVTSVHHGTGEEFDSQHQVLTFETGRRNLFWRKIQCRRHYYTHRYHKGICIKGVLYYAAT 248
Query: 164 KLEKEGGGCDIC 171
++ G +C
Sbjct: 249 SMKPMLGPMIVC 260
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN52568.1 | 3.0e-106 | 100.00 | hypothetical protein Csa_008927 [Cucumis sativus] | [more] |
KAA0039382.1 | 1.1e-81 | 84.43 | F-box protein [Cucumis melo var. makuwa] >TYK00570.1 F-box protein [Cucumis melo... | [more] |
XP_008459707.1 | 5.6e-81 | 83.23 | PREDICTED: F-box protein At3g07870-like [Cucumis melo] | [more] |
KAA0039383.1 | 1.5e-65 | 72.46 | F-box protein [Cucumis melo var. makuwa] >TYK00571.1 F-box protein [Cucumis melo... | [more] |
XP_004141601.1 | 1.1e-28 | 49.03 | F-box protein At3g07870 [Cucumis sativus] >KGN52549.1 hypothetical protein Csa_0... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KSN0 | 1.4e-106 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643960 PE=4 SV=1 | [more] |
A0A5A7T7C6 | 5.5e-82 | 84.43 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850... | [more] |
A0A1S3CB99 | 2.7e-81 | 83.23 | F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1 | [more] |
A0A5A7T8U6 | 7.2e-66 | 72.46 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001870... | [more] |
A0A0A0KUJ1 | 5.4e-29 | 49.03 | FBA_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
AT1G55070.1 | 2.0e-04 | 20.45 | F-box and associated interaction domains-containing protein | [more] |