CsaV3_5G039080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G039080
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionF-box protein
Locationchr5: 30894824 .. 30895351 (+)
RNA-Seq ExpressionCsaV3_5G039080
SyntenyCsaV3_5G039080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA

mRNA sequence

ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA

Coding sequence (CDS)

ATGCGCGAAGAAGTCTCCGATTACGTTCCATTTAAATGGTGCAATCCCAAGATACAGTGTGTCGATATTGATCCTAAGACAAGTTCTGTTGCCTCATTTAGGTTTGAGGATGATTGGTCAAGTATCACAATTGTCAATTCCTGTAATGGTTTGTTGTATATCTGCAAGTTTATTTTTGACTCTCTATGTGAAGGCATATTAAATCCGATGACAAATGAATTTGTGGAAATTCCTCCACCCGATATAGAATTAGATGTTCACTGCGTTGGTTTTGGTTTCAGCCCTCGAACAAAACAATACAAACTATTCAGAACTGAACCAGAAATCCTTCCCAATTGGAAAAAGTGCCATTACAGAATGGATATTTTTACCTTTGATAATGGCCATAAGCAATGGAGGCATTTTAAGCGTCTACCTTTTGTAGTCTTCCATCATGGTCAGTACTTGAATGGAATCATCTACTGGATCGGAAAGAAATTAGAAAAAGAGGGGGGAGGTTGTGATATATGCTCTCGATGTCGACACTGA

Protein sequence

MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH*
Homology
BLAST of CsaV3_5G039080 vs. NCBI nr
Match: KGN52568.1 (hypothetical protein Csa_008927 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 3.0e-106
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
           MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD
Sbjct: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60

Query: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
           SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM
Sbjct: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120

Query: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 176
           DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH
Sbjct: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 175

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: KAA0039382.1 (F-box protein [Cucumis melo var. makuwa] >TYK00570.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.1e-81
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 0

Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M +EVSDY+PFK   WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 1   MADEVSDYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 60

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
            FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 61  TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 120

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 167

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: XP_008459707.1 (PREDICTED: F-box protein At3g07870-like [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 5.6e-81
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0

Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M +E+S+Y+PFK   WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 68  MADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 127

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
            FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 128 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 187

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 188 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 234

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: KAA0039383.1 (F-box protein [Cucumis melo var. makuwa] >TYK00571.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 121/167 (72.46%), Postives = 129/167 (77.25%), Query Frame = 0

Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M EEVSDY+PFK   WCNPKI+CVDID KTSSVASF F                      
Sbjct: 1   MEEEVSDYIPFKSIRWCNPKIRCVDIDHKTSSVASFGF---------------------- 60

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
                 EGILNPMTNEF+EIP P+IELDVHC GFGFSPRTKQYKLFRTEPE+L NWKKCH
Sbjct: 61  ------EGILNPMTNEFMEIPQPEIELDVHCTGFGFSPRTKQYKLFRTEPEVLDNWKKCH 120

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNGHKQWRHFKRLPF+VFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGHKQWRHFKRLPFLVFHHGQYLNGVIYWIGKKLEKEG 139

BLAST of CsaV3_5G039080 vs. NCBI nr
Match: XP_004141601.1 (F-box protein At3g07870 [Cucumis sativus] >KGN52549.1 hypothetical protein Csa_008830 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-28
Identity = 76/155 (49.03%), Postives = 97/155 (62.58%), Query Frame = 0

Query: 14  CNPKIQCVDIDPKTSSVASFRFEDD--WSSITIVNSCNGLLYICKFI-FDSLCEGILNPM 73
           CN KI C+DID   S V SF FEDD   S+++IV+SC+ LL I K I  D LCEGILNPM
Sbjct: 5   CNFKIHCIDID-TMSCVGSFGFEDDHNHSTVSIVSSCHALLLISKLIDTDDLCEGILNPM 64

Query: 74  TNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTF---DN 133
           TNEF+E+P  + +      GFGF+P+TKQYKLFR       +  + +  M+I  F     
Sbjct: 65  TNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTER---DRYEFYSIMEIMRFGDRSE 124

Query: 134 GHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEK 163
             ++WRHFK  P     HG YLNG+IYW+GK+  K
Sbjct: 125 TKEEWRHFKCPPISFDDHGAYLNGVIYWMGKEKGK 155

BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match: A0A0A0KSN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643960 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.4e-106
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60
           MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD
Sbjct: 1   MREEVSDYVPFKWCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKFIFD 60

Query: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120
           SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM
Sbjct: 61  SLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRM 120

Query: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 176
           DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH
Sbjct: 121 DIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEGGGCDICSRCRH 175

BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match: A0A5A7T7C6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.5e-82
Identity = 141/167 (84.43%), Postives = 151/167 (90.42%), Query Frame = 0

Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M +EVSDY+PFK   WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 1   MADEVSDYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 60

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
            FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 61  TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 120

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 167

BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match: A0A1S3CB99 (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0

Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M +E+S+Y+PFK   WCNPKI CVDID KTS VASF FE DWS ITIVNSCNGLLYICKF
Sbjct: 68  MADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF 127

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
            FDSLCEGILNPMTNEF+EIP P+IELDVH +GFGFSPRTKQYKLFRTEPE+L N KKCH
Sbjct: 128 TFDSLCEGILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEVLENLKKCH 187

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNG+KQWRHF+RLPFVVFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 188 YIMEIFTFDNGYKQWRHFERLPFVVFHHGQYLNGVIYWIGKKLEKEG 234

BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match: A0A5A7T8U6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001870 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.2e-66
Identity = 121/167 (72.46%), Postives = 129/167 (77.25%), Query Frame = 0

Query: 1   MREEVSDYVPFK---WCNPKIQCVDIDPKTSSVASFRFEDDWSSITIVNSCNGLLYICKF 60
           M EEVSDY+PFK   WCNPKI+CVDID KTSSVASF F                      
Sbjct: 1   MEEEVSDYIPFKSIRWCNPKIRCVDIDHKTSSVASFGF---------------------- 60

Query: 61  IFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCH 120
                 EGILNPMTNEF+EIP P+IELDVHC GFGFSPRTKQYKLFRTEPE+L NWKKCH
Sbjct: 61  ------EGILNPMTNEFMEIPQPEIELDVHCTGFGFSPRTKQYKLFRTEPEVLDNWKKCH 120

Query: 121 YRMDIFTFDNGHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEKEG 165
           Y M+IFTFDNGHKQWRHFKRLPF+VFHHGQYLNG+IYWIGKKLEKEG
Sbjct: 121 YIMEIFTFDNGHKQWRHFKRLPFLVFHHGQYLNGVIYWIGKKLEKEG 139

BLAST of CsaV3_5G039080 vs. ExPASy TrEMBL
Match: A0A0A0KUJ1 (FBA_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.4e-29
Identity = 76/155 (49.03%), Postives = 97/155 (62.58%), Query Frame = 0

Query: 14  CNPKIQCVDIDPKTSSVASFRFEDD--WSSITIVNSCNGLLYICKFI-FDSLCEGILNPM 73
           CN KI C+DID   S V SF FEDD   S+++IV+SC+ LL I K I  D LCEGILNPM
Sbjct: 5   CNFKIHCIDID-TMSCVGSFGFEDDHNHSTVSIVSSCHALLLISKLIDTDDLCEGILNPM 64

Query: 74  TNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLFRTEPEILPNWKKCHYRMDIFTF---DN 133
           TNEF+E+P  + +      GFGF+P+TKQYKLFR       +  + +  M+I  F     
Sbjct: 65  TNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTER---DRYEFYSIMEIMRFGDRSE 124

Query: 134 GHKQWRHFKRLPFVVFHHGQYLNGIIYWIGKKLEK 163
             ++WRHFK  P     HG YLNG+IYW+GK+  K
Sbjct: 125 TKEEWRHFKCPPISFDDHGAYLNGVIYWMGKEKGK 155

BLAST of CsaV3_5G039080 vs. TAIR 10
Match: AT1G55070.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.0e-04
Identity = 27/132 (20.45%), Postives = 60/132 (45.45%), Query Frame = 0

Query: 44  IVNSCNGLLYICKFIFDSLCEGILNPMTNEFVEIPPPDIELDVHCVGFGFSPRTKQYKLF 103
           I++S +GL+   + I +     I NP+T ++V +P  +    ++    G+ P  K++K+ 
Sbjct: 129 ILSSVHGLVCYHRKIKNDTVFVIYNPITGQYVTLPILEAHATINYFAIGYDPINKRFKVL 188

Query: 104 RTEPEILPNWKKCHYRMDIFTFDNGHKQ--WRHFK-RLPFVV--FHHGQYLNGIIYWIGK 163
                     ++   +  + TF+ G +   WR  + R  +    +H G  + G++Y+   
Sbjct: 189 CVTSVHHGTGEEFDSQHQVLTFETGRRNLFWRKIQCRRHYYTHRYHKGICIKGVLYYAAT 248

Query: 164 KLEKEGGGCDIC 171
            ++   G   +C
Sbjct: 249 SMKPMLGPMIVC 260

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52568.13.0e-106100.00hypothetical protein Csa_008927 [Cucumis sativus][more]
KAA0039382.11.1e-8184.43F-box protein [Cucumis melo var. makuwa] >TYK00570.1 F-box protein [Cucumis melo... [more]
XP_008459707.15.6e-8183.23PREDICTED: F-box protein At3g07870-like [Cucumis melo][more]
KAA0039383.11.5e-6572.46F-box protein [Cucumis melo var. makuwa] >TYK00571.1 F-box protein [Cucumis melo... [more]
XP_004141601.11.1e-2849.03F-box protein At3g07870 [Cucumis sativus] >KGN52549.1 hypothetical protein Csa_0... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSN01.4e-106100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643960 PE=4 SV=1[more]
A0A5A7T7C65.5e-8284.43F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850... [more]
A0A1S3CB992.7e-8183.23F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1[more]
A0A5A7T8U67.2e-6672.46F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001870... [more]
A0A0A0KUJ15.4e-2949.03FBA_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G643280 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT1G55070.12.0e-0420.45F-box and associated interaction domains-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 46..161
e-value: 4.7E-15
score: 53.5
NoneNo IPR availablePANTHERPTHR31790:SF414F-BOX AND ASSOCIATED INTERACTION DOMAINS-CONTAINING-LIKE PROTEINcoord: 29..156
NoneNo IPR availablePANTHERPTHR31790OS02G0783600 PROTEINcoord: 29..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G039080.1CsaV3_5G039080.1mRNA