CsaV3_5G038860 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G038860
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	stress-induced protein KIN2-like
Location	chr5: 30773600 .. 30774274 (-)
RNA-Seq Expression	CsaV3_5G038860
Synteny	CsaV3_5G038860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAACAACTTTAGAAGAATCATATATTCACAAATTGATCTAATTCCTTATTCTAAACTTTCTCTTTCACAATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGTTTTCGTCTATTCTATATCTTTTTTTATTTTTAAAACATTTATTAAAAGTATAATGAGTATGATGTTGGTGGGTTGTATTGTTAATTATATAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAAAACCATATATCAATCATCCTTATTATTGATATTTGATCAATTAATTATGAGTTTTACTTTTCGAGTTTGGGATTTGTTTGGTTACTCCTTTTCTTAGGGGGGTTTTTCAAAGATGTCAAATAAATTCCTATTGGAATTTCTTTTCATTTTCAACTTTCATTTATACATGAATATATTTTCTTAGATCATATTCAAAGTAATTGTTGCTAAATAATGATTATAGATTTAATTATGTCTATCTAAATCCAAGATCATAGTGCCATTTTTTTTTAAAGAAATATTATCAATTTTCAATTACTTTTAATTTA

mRNA sequence

ATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAA

Coding sequence (CDS)

ATGGCAGACAATAACTCTAACAAGATGAGCTTTCAAGCTGGAGAAGCCAAGGGCCAAGCTCAGGAGAAGGCTAGCAATTTGATGGATAAGGCGAGTAATGCAGCGGAATCGGCTAAAGAGTCCATTCAAGAGACAGGCCAACAGATGATGGCTAAGGCTCAAGGTGCTGCTGATGCTGCCAAAGATGCTGTCAACAAATAA

Protein sequence

MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDAVNK*

Homology

[Close]

BLAST of CsaV3_5G038860 vs. NCBI nr
Match: XP_004141484.1 (stress-induced protein KIN2 [Cucumis sativus] >KGN52545.1 hypothetical protein Csa_008650 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 5.9e-23
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA
Sbjct: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CsaV3_5G038860 vs. NCBI nr
Match: XP_008459451.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0039406.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS  MS+QAGEAKGQAQEKASN+MDKASNAAESAKESIQE+GQQMMAKAQGAADA 
Sbjct: 1  MADTNSQNMSYQAGEAKGQAQEKASNMMDKASNAAESAKESIQESGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CsaV3_5G038860 vs. NCBI nr
Match: TYK00593.1 (stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 9.8e-18
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS KMS+ AGEAKGQ QEKASN+MDKASNAAESAKESIQE+GQQMMAKAQGAADA 
Sbjct: 1  MAD-NSQKMSYNAGEAKGQTQEKASNMMDKASNAAESAKESIQESGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CsaV3_5G038860 vs. NCBI nr
Match: KAA0039405.1 (stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 8.3e-17
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS KMS+ AGEAKGQ QEK SN+MDKASNAAESAKES QETGQQMMAKA+GAADA 
Sbjct: 1  MAD-NSQKMSYNAGEAKGQTQEKVSNMMDKASNAAESAKESAQETGQQMMAKAEGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CsaV3_5G038860 vs. NCBI nr
Match: XP_004141485.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical protein Csa_008504 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-16
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS KMS+ AGEAKGQ QEK SN+MDKAS+AA+SAKES+QETGQQMMAKAQGAADA 
Sbjct: 1  MAD-NSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CsaV3_5G038860 vs. ExPASy TrEMBL
Match: A0A0A0KSI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643240 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.9e-23
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA
Sbjct: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CsaV3_5G038860 vs. ExPASy TrEMBL
Match: A0A5A7TBJ5 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002090 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.6e-20
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS  MS+QAGEAKGQAQEKASN+MDKASNAAESAKESIQE+GQQMMAKAQGAADA 
Sbjct: 1  MADTNSQNMSYQAGEAKGQAQEKASNMMDKASNAAESAKESIQESGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CsaV3_5G038860 vs. ExPASy TrEMBL
Match: A0A1S3CBF5 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498582 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.6e-20
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS  MS+QAGEAKGQAQEKASN+MDKASNAAESAKESIQE+GQQMMAKAQGAADA 
Sbjct: 1  MADTNSQNMSYQAGEAKGQAQEKASNMMDKASNAAESAKESIQESGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 66

[Close]

BLAST of CsaV3_5G038860 vs. ExPASy TrEMBL
Match: A0A5D3BLF3 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002100 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS KMS+ AGEAKGQ QEKASN+MDKASNAAESAKESIQE+GQQMMAKAQGAADA 
Sbjct: 1  MAD-NSQKMSYNAGEAKGQTQEKASNMMDKASNAAESAKESIQESGQQMMAKAQGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CsaV3_5G038860 vs. ExPASy TrEMBL
Match: A0A5A7TD88 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G002080 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.0e-17
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MADNNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAA 60
          MAD NS KMS+ AGEAKGQ QEK SN+MDKASNAAESAKES QETGQQMMAKA+GAADA 
Sbjct: 1  MAD-NSQKMSYNAGEAKGQTQEKVSNMMDKASNAAESAKESAQETGQQMMAKAEGAADAV 60

Query: 61 KDAVNK 67
          KDAVNK
Sbjct: 61 KDAVNK 65

[Close]

BLAST of CsaV3_5G038860 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 6.3e-15
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKD 63
          NNS  MSF AG+AKGQ QEKASNL+DKASNAA+SAKESIQE GQQ+  KAQGA++  K+
Sbjct: 3  NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKE 61

[Close]

BLAST of CsaV3_5G038860 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-14
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKDA 63
          +NS  +SFQAG+AKGQ QEKAS +MDKASNAA+SAKES++ETGQQ+  KAQGA ++ K+A
Sbjct: 3  SNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNA 62

[Close]

BLAST of CsaV3_5G038860 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 4.2e-11
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKD 63
          +N    S+QAG+A GQ +EKA  +MDKA +AA SA++S+Q+TGQQM  KAQGAAD  KD
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60

[Close]

BLAST of CsaV3_5G038860 vs. TAIR 10
Match: AT5G15970.1 (stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) )

HSP 1 Score: 41.6 bits (96), Expect = 2.9e-04
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 4  NNSNKMSFQAGEAKGQAQEKASNLMDKASNAAESAKESIQETGQQMMAKAQGAADAAKD 63
          + +NK +FQAG+A G+A+EK++ L+DKA +AA +A  S Q+ G+ +   A G  +  KD
Sbjct: 2  SETNKNAFQAGQAAGKAEEKSNVLLDKAKDAAAAAGASAQQAGKSISDAAVGGVNFVKD 60

The following BLAST results are available for this feature:

BLAST of CsaV3_5G038860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141484.1	5.9e-23	100.00	stress-induced protein KIN2 [Cucumis sativus] >KGN52545.1 hypothetical protein C...	[more]
XP_008459451.1	1.8e-19	89.39	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0039406.1 stress-...	[more]
TYK00593.1	9.8e-18	87.88	stress-induced protein KIN2-like [Cucumis melo var. makuwa]	[more]
KAA0039405.1	8.3e-17	84.85	stress-induced protein KIN2-like [Cucumis melo var. makuwa]	[more]
XP_004141485.1	1.4e-16	83.33	late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical...	[more]

BLAST of CsaV3_5G038860 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G038860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSI8	2.9e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643240 PE=4 SV=1	[more]
A0A5A7TBJ5	8.6e-20	89.39	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3CBF5	8.6e-20	89.39	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103498582 PE=4 SV...	[more]
A0A5D3BLF3	4.7e-18	87.88	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7TD88	4.0e-17	84.85	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]

BLAST of CsaV3_5G038860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53820.1	6.3e-15	72.88	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G38760.1	2.4e-14	68.33	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	4.2e-11	59.32	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G15970.1	2.9e-04	42.37	stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsi...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 21..48
None	No IPR available	GENE3D	6.10.140.1430		coord: 2..47 e-value: 5.4E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..50
None	No IPR available	PANTHER	PTHR34191:SF4	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 4..66
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 4..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G038860.1	CsaV3_5G038860.1	mRNA