CsaV3_5G038510 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTGAATTTGTAGCTTTAGGTCGATGATAAGTCAGCTAGAGAGTTTCAACGTTGTGATCGATTGATTGATTTAGCTATGTTTCAACTGAATCTTCCATTGATTTTGGAAACAGATGCCAATGGATACTACACAGAGTTTTAAGGAATCTAAGGGACAATTAGATCAGGTGAACCACAAAGAAACAGATGCTATCTCTGATCGAAGCAACTCGAATTCTTCATGTACCTCAGATTTGTCACAAGACTCGGCGGTTAGCAGCATTTTCCAGAGTGATCCTCCTGTTCTTCAATCAAAACCAGATGTTGCCGAGCCTCTGGGAGCTGTGCAAACAGTGGAGAATCAACCTGTGGATTCTCTTAGTAGAATCCAGAGTTCTTCTAGGGGTTCTTCTCATATTCGGTTATCTGGGCCGCTTGGAAACCACGATCCGAATAGAATACCGGTGTCCATCTTCTCTGGTAGACCATCAAACCCTACGGAATGGAGCACTGCTTCAAACGAATCATTGTTCAGTATTCATGTGGGAAACAGTAGCTTTTCAAGGGAACATTTCAATTTTTTTAAGTCTGGAGAATTGTTGATGAACCCCAATGCATCCCAGACTCTATCCAACCTGCCCCCTTTTGTTGAACCATTAAGAGCTGAGAGTAAATCTGAAATCGCGGTGAAGACATTCGCCGAACCAGTGACGTCGTCGTCAACTGCACATCCGGTTTCACCCACATCAAGTCAAAATGTAGCAGATCATAAAAAAGAAGTCACGACAACTATGGATGAGCTTCGAGGTCGCCAGAGCGTATCAAACGACAGCATGAATAGCTCTCGTTCATTTCAGTTCCCACTGTAAGCAATCCTATATCATATGTCTATTTTGGAGATGTTTTCATAATTTTGAGCTTGGAATCTAAAACATTAAGGCTATAAATTGTGTCTTCTTTTATCAGATTGGCAAGTGAAGGTGCAACACCAAAAACAACTAGCTCTGTTTCAACAGACTCCGGTGTAACATCACAACAACAGCCATCAAAGCTGCAATCGAAAAAGCGGCAATCAGCAAAGCATCAATTGCCAGAACTTCAGTCTTCATCTCAGGCCGCCTCACCATCTCCAGCCACGAATTCAGGTTCGGGATGGTTTTCCTGTCTCTCTTGGTGTCGATGCCGATGACGAAATCTCTGCTTGTGTTGACTATACTCTACTTGTTCTACTCACATCATCACAGAGAAAAGCTACAGGAGATGGTAACTTTACACTCTAGCTAATTAGTTCTCTCTAAATGAAAAGAAAAACAGAGAAAAAGAACAAGGGCTCCAATTGATCGACCTCCTTAAGAGTTATAGCAGAAGAATTAGTCATTATTGTAACAATCTTTTTTCTTTTCTTTTCTTTTCTTTTCTTTCGACTTCTCCATTCTCTAGATAAATAATGAAATCGAATGTTTGATTTATTCTCTCTGGCTTTGATTAAAACTACTAATTTATTATACCTCAAACTTATCTTCATCAAAACCTTGACTTGTTAACATCTGTTTATATATAATACATAAACTTTTCATTTATGACAGTTCCTGAAAGAACATTTGCTTAGAAAGGTTGATACATTTCTTCATATTTGTCATAAATTTTGTTGATATACTGCAGAGTTTATACAAAAGGAAATCAAGAGTTCAATTCTCATTCCCTTTGAGAGTTGAGAATTGTGGTTTCACAGATTTCACACTAATATAAAATTTTATTAGTGTCTATGGTTTGACATTGATTTAATAGGTTGGTTAATAATTTACCTAAAATTTTTTAAAAAAGTATCATTTCAAATATAATAAATATTTTATTTTTATATTTTTTACCATTCTCAAGAAAAAGAAAAACACACACACAAAAACACAAAATAAAGAGCTAAAGAGTCTTGAGACCATCGGAGAAAATGGAAGCAAAACAGAGCATTTCCGGTTGAGAAAGCACCAAATTCACTTCAATCCCGTCTCCATCTCTTCCATCCGCCAGTGAAATTGAACCAGTCCTCTCAATCGAAACCATCTTCACATTTTCCGGTCTTCCCCACCCGAAATCCAACTCGTAAACCCCTAATCTCGGCGATCCAACCACTCCCACAAACTTAATCCCCCCTTCCACCTTCTCCCATTTCGACAAACTTTCCTCCGCCCCCTTTGTCACATTCTCATCCAAACCCTTTATCGCTTCATCAATCCTCTTCGATGCAATCCCCAGCCCCTTTTCCTCATCCTCCAGTTCTCCCACTTCCGCATAAACCCCATGGCTTCCACCGCAGTTCCCGAAGTAGTTCGCTGGTACTGCTGGATCCAGTCGAGCTCGCCAATCGGCGTAGAAACCCAGGTACACTCTCTTCTTCTTCTGTTCTGTTCTCGCTGATTTTACTGCACAAATCGATATGTACGCGAATGCGAGAACGAACGATGAGTATCGGGTCGGTTTCGAGGGTTTTGATTCATCTTCTTTTGTTGTTGCTTTCCTGAGATTTTCGATGTCTGTACGTGTGAATTTGAATGTGCCTCTTACCATTTCTGGGGAAACACCCAAATTTGGGAAATATTTCAGGCTTTTGATTGATGGGTCAGTGGGGTTGGTCTTTTTTAGCCAGTAGTTGATGTAGAGCATGTCGATTCCTTTCGGGTCTTTGATAATAGACCGATCGAAAAATGGGGTTAGATCAGGCGGAAGAGCAATGGAGAATTCGGGTTTGTTTGGTGTCTGCTTGAAAATGTAAGCCCACGATTTCAAAAACATAATCGAGCTTTTCCCATCAACAAAAGCATGGTGATTGGATATGCCAATGGATAATCCCCTGTTTTGGAACAGAGTGATTTGCAGAGCCATAACCGGAACAGAATCATCCGCTGCCGGCAATTCCGGGACAAAGGGACGGCACTCTTCCACAGGACGGATTCCAGTTCCGGAAAAGTGGGTAAAGTCGGCATCAGTCTCAACAACGGTGAGGGAAACGCCATCACCAGGGGAGTAACGAACGATTGGTTTGGGAGATTCCGGCGGCCAGACGAGGTTTCCGGCGAGAGGGAGGAAGTGTTGGAGAGTAAGAGAAAGGGAATGCTTGAGATGTGTGAGGAGGGAATTAGAGTCGAACAATGGCGGGTCTGGTAAAGAGTAGAAGAAGAGTCGTTCTGTGGGAGGGATTTTTAAAAACAGAGCATCGAAGTAAGTAAAAGGAAGAGAGAAATGGGTAGCGGAGGAAGGAGAAGCAGGCGGCGGAGCCACTGTAGACACTTCCAAAACACTGATCAGGTTTGGTTTCAGTTTCTCCATACTATGAGATGGGAGAGTTTTAATTTGAAGTTGGAATTGATAGCAATCCTTTCTGATTCAGAATTATTTATAGAAATTTATGATTGAAGAAAGGAAGGATTGATTGTTGTGTTTCACGTGGTAATGGAAATTGGATTCATTGTTATATGATGTGAGAAAGAGAATTCAAACACAATCGTCCTTTAAACCTATGTTCTCTTTTATATTTTGCATCAACGTGAATCACGACGTAGTGGGAGATTTTTGTATAGACTCCGTTTTG ATGCCAATGGATACTACACAGAGTTTTAAGGAATCTAAGGGACAATTAGATCAGGTGAACCACAAAGAAACAGATGCTATCTCTGATCGAAGCAACTCGAATTCTTCATGTACCTCAGATTTGTCACAAGACTCGGCGGTTAGCAGCATTTTCCAGAGTGATCCTCCTGTTCTTCAATCAAAACCAGATGTTGCCGAGCCTCTGGGAGCTGTGCAAACAGTGGAGAATCAACCTGTGGATTCTCTTAGTAGAATCCAGAGTTCTTCTAGGGGTTCTTCTCATATTCGGTTATCTGGGCCGCTTGGAAACCACGATCCGAATAGAATACCGGTGTCCATCTTCTCTGGTAGACCATCAAACCCTACGGAATGGAGCACTGCTTCAAACGAATCATTGTTCAGTATTCATGTGGGAAACAGTAGCTTTTCAAGGGAACATTTCAATTTTTTTAAGTCTGGAGAATTGTTGATGAACCCCAATGCATCCCAGACTCTATCCAACCTGCCCCCTTTTGTTGAACCATTAAGAGCTGAGAGTAAATCTGAAATCGCGGTGAAGACATTCGCCGAACCAGTGACGTCGTCGTCAACTGCACATCCGGTTTCACCCACATCAAGTCAAAATGTAGCAGATCATAAAAAAGAAGTCACGACAACTATGGATGAGCTTCGAGGTCGCCAGAGCGTATCAAACGACAGCATGAATAGCTCTCGTTCATTTCAGTTCCCACTATTGGCAAGTGAAGGTGCAACACCAAAAACAACTAGCTCTGTTTCAACAGACTCCGGTGTAACATCACAACAACAGCCATCAAAGCTGCAATCGAAAAAGCGGCAATCAGCAAAGCATCAATTGCCAGAACTTCAGTCTTCATCTCAGGCCGCCTCACCATCTCCAGCCACGAATTCAGGTTCGGGATGGTTTTCCTGTCTCTCTTGGTGTCGATGCCGATGA ATGCCAATGGATACTACACAGAGTTTTAAGGAATCTAAGGGACAATTAGATCAGGTGAACCACAAAGAAACAGATGCTATCTCTGATCGAAGCAACTCGAATTCTTCATGTACCTCAGATTTGTCACAAGACTCGGCGGTTAGCAGCATTTTCCAGAGTGATCCTCCTGTTCTTCAATCAAAACCAGATGTTGCCGAGCCTCTGGGAGCTGTGCAAACAGTGGAGAATCAACCTGTGGATTCTCTTAGTAGAATCCAGAGTTCTTCTAGGGGTTCTTCTCATATTCGGTTATCTGGGCCGCTTGGAAACCACGATCCGAATAGAATACCGGTGTCCATCTTCTCTGGTAGACCATCAAACCCTACGGAATGGAGCACTGCTTCAAACGAATCATTGTTCAGTATTCATGTGGGAAACAGTAGCTTTTCAAGGGAACATTTCAATTTTTTTAAGTCTGGAGAATTGTTGATGAACCCCAATGCATCCCAGACTCTATCCAACCTGCCCCCTTTTGTTGAACCATTAAGAGCTGAGAGTAAATCTGAAATCGCGGTGAAGACATTCGCCGAACCAGTGACGTCGTCGTCAACTGCACATCCGGTTTCACCCACATCAAGTCAAAATGTAGCAGATCATAAAAAAGAAGTCACGACAACTATGGATGAGCTTCGAGGTCGCCAGAGCGTATCAAACGACAGCATGAATAGCTCTCGTTCATTTCAGTTCCCACTATTGGCAAGTGAAGGTGCAACACCAAAAACAACTAGCTCTGTTTCAACAGACTCCGGTGTAACATCACAACAACAGCCATCAAAGCTGCAATCGAAAAAGCGGCAATCAGCAAAGCATCAATTGCCAGAACTTCAGTCTTCATCTCAGGCCGCCTCACCATCTCCAGCCACGAATTCAGGTTCGGGATGGTTTTCCTGTCTCTCTTGGTGTCGATGCCGATGA MPMDTTQSFKESKGQLDQVNHKETDAISDRSNSNSSCTSDLSQDSAVSSIFQSDPPVLQSKPDVAEPLGAVQTVENQPVDSLSRIQSSSRGSSHIRLSGPLGNHDPNRIPVSIFSGRPSNPTEWSTASNESLFSIHVGNSSFSREHFNFFKSGELLMNPNASQTLSNLPPFVEPLRAESKSEIAVKTFAEPVTSSSTAHPVSPTSSQNVADHKKEVTTTMDELRGRQSVSNDSMNSSRSFQFPLLASEGATPKTTSSVSTDSGVTSQQQPSKLQSKKRQSAKHQLPELQSSSQAASPSPATNSGSGWFSCLSWCRCR* Homology
BLAST of CsaV3_5G038510 vs. NCBI nr
Match: XP_011656011.1 (uncharacterized protein LOC105435613 [Cucumis sativus] >XP_031742309.1 uncharacterized protein LOC105435613 [Cucumis sativus] >KAE8648941.1 hypothetical protein Csa_007740 [Cucumis sativus]) HSP 1 Score: 595.9 bits (1535), Expect = 2.1e-166 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. NCBI nr
Match: KAA0039436.1 (uncharacterized protein E6C27_scaffold64G002430 [Cucumis melo var. makuwa] >TYK00625.1 uncharacterized protein E5676_scaffold169G002450 [Cucumis melo var. makuwa]) HSP 1 Score: 543.5 bits (1399), Expect = 1.2e-150 Identity = 293/315 (93.02%), Postives = 302/315 (95.87%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. NCBI nr
Match: XP_008459383.1 (PREDICTED: uncharacterized protein LOC103498531 [Cucumis melo] >XP_016902402.1 PREDICTED: uncharacterized protein LOC103498531 [Cucumis melo]) HSP 1 Score: 543.5 bits (1399), Expect = 1.2e-150 Identity = 293/315 (93.02%), Postives = 302/315 (95.87%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. NCBI nr
Match: XP_038890702.1 (uncharacterized protein LOC120080199 [Benincasa hispida]) HSP 1 Score: 473.0 bits (1216), Expect = 2.0e-129 Identity = 264/317 (83.28%), Postives = 281/317 (88.64%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. NCBI nr
Match: XP_022133869.1 (uncharacterized protein LOC111006315 [Momordica charantia] >XP_022133870.1 uncharacterized protein LOC111006315 [Momordica charantia] >XP_022133871.1 uncharacterized protein LOC111006315 [Momordica charantia]) HSP 1 Score: 343.2 bits (879), Expect = 2.4e-90 Identity = 208/318 (65.41%), Postives = 236/318 (74.21%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. ExPASy TrEMBL
Match: A0A0A0KXK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G639470 PE=4 SV=1) HSP 1 Score: 591.3 bits (1523), Expect = 2.5e-165 Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. ExPASy TrEMBL
Match: A0A1S4E2F1 (uncharacterized protein LOC103498531 OS=Cucumis melo OX=3656 GN=LOC103498531 PE=4 SV=1) HSP 1 Score: 543.5 bits (1399), Expect = 5.9e-151 Identity = 293/315 (93.02%), Postives = 302/315 (95.87%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. ExPASy TrEMBL
Match: A0A5A7TBM6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002450 PE=4 SV=1) HSP 1 Score: 543.5 bits (1399), Expect = 5.9e-151 Identity = 293/315 (93.02%), Postives = 302/315 (95.87%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. ExPASy TrEMBL
Match: A0A6J1BWD8 (uncharacterized protein LOC111006315 OS=Momordica charantia OX=3673 GN=LOC111006315 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 1.2e-90 Identity = 208/318 (65.41%), Postives = 236/318 (74.21%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. ExPASy TrEMBL
Match: A0A6J1K2X5 (uncharacterized protein LOC111489581 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489581 PE=4 SV=1) HSP 1 Score: 342.4 bits (877), Expect = 2.0e-90 Identity = 211/321 (65.73%), Postives = 240/321 (74.77%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. TAIR 10
Match: AT2G03630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). ) HSP 1 Score: 68.6 bits (166), Expect = 1.1e-11 Identity = 81/248 (32.66%), Postives = 108/248 (43.55%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. TAIR 10
Match: AT2G03630.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 87 Blast hits to 87 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 2.6e-10 Identity = 59/153 (38.56%), Postives = 76/153 (49.67%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. TAIR 10
Match: AT3G02125.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39200.1); Has 2247 Blast hits to 1434 proteins in 202 species: Archae - 4; Bacteria - 111; Metazoa - 942; Fungi - 239; Plants - 140; Viruses - 37; Other Eukaryotes - 774 (source: NCBI BLink). ) HSP 1 Score: 58.5 bits (140), Expect = 1.1e-08 Identity = 93/316 (29.43%), Postives = 130/316 (41.14%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. TAIR 10
Match: AT5G39200.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39140.1); Has 65 Blast hits to 65 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05 Identity = 63/218 (28.90%), Postives = 96/218 (44.04%), Query Frame = 0
BLAST of CsaV3_5G038510 vs. TAIR 10
Match: AT1G74220.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast hits to 347 proteins in 86 species: Archae - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2; Other Eukaryotes - 136 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 5.7e-05 Identity = 92/343 (26.82%), Postives = 138/343 (40.23%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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