CsaV3_5G037750 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G037750
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 29887526 .. 29888115 (-)
RNA-Seq ExpressionCsaV3_5G037750
SyntenyCsaV3_5G037750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCAACCAAATAAACCAATTAAAACCACCGCTTTGTTAGTTAGAAATTAATCGACCCTTTTTAATTTTTTCTTCTTAAATCTTCACAAATAAATCAGCTCCAAGAGAAGGAAAGGAAGAAACATAGATACAGACTCCAAGAAAAGGAAGAAGGAAGAAAACACAGATACAGACTTACTTCTAATTATGACAACATTGCAGAGATCATCTATCTCGTTCAGGAGGCAAGGCTCGTCCGGCCTCATCTGGGAGGACAATGTTCGAGCACTCGAGGCGAAAACTGGTGCTCGGGCCACGGCATCCACATCTGTGATGAGCCAAGAATTGAGCCAATCGAGTGGGGAGAGAGACGAAACTCCAAAGTCAGATGGTTTGGACGAAGTTAATTCATCGTCGTCTCCTTCAACTCCTCCGGAAAGAACGACTCCTCAAAAATGCTCTTTTTCTTCCGTCTTTGGACGTTGTATGGGCTCATCATCTCGTCCCACTTAATTTAGCTTCAGTTTCTTTAAATCATTTGTTCATTGTTCAAAAGACATATTCTTTTCTTCTTTTTAATATGAATTAGCCTAATATATATAAAAATAAAT

mRNA sequence

ATGACAACATTGCAGAGATCATCTATCTCGTTCAGGAGGCAAGGCTCGTCCGGCCTCATCTGGGAGGACAATGTTCGAGCACTCGAGGCGAAAACTGGTGCTCGGGCCACGGCATCCACATCTGTGATGAGCCAAGAATTGAGCCAATCGAGTGGGGAGAGAGACGAAACTCCAAAGTCAGATGGTTTGGACGAAGTTAATTCATCGTCGTCTCCTTCAACTCCTCCGGAAAGAACGACTCCTCAAAAATGCTCTTTTTCTTCCGTCTTTGGACGTTGTATGGGCTCATCATCTCGTCCCACTTAA

Coding sequence (CDS)

ATGACAACATTGCAGAGATCATCTATCTCGTTCAGGAGGCAAGGCTCGTCCGGCCTCATCTGGGAGGACAATGTTCGAGCACTCGAGGCGAAAACTGGTGCTCGGGCCACGGCATCCACATCTGTGATGAGCCAAGAATTGAGCCAATCGAGTGGGGAGAGAGACGAAACTCCAAAGTCAGATGGTTTGGACGAAGTTAATTCATCGTCGTCTCCTTCAACTCCTCCGGAAAGAACGACTCCTCAAAAATGCTCTTTTTCTTCCGTCTTTGGACGTTGTATGGGCTCATCATCTCGTCCCACTTAA

Protein sequence

MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKSDGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSSRPT*
Homology
BLAST of CsaV3_5G037750 vs. NCBI nr
Match: KGN52429.1 (hypothetical protein Csa_008360 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 6.4e-45
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
           MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS
Sbjct: 1   MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60

Query: 61  DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSSRPT 102
           DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSSRPT
Sbjct: 61  DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSSRPT 101

BLAST of CsaV3_5G037750 vs. NCBI nr
Match: KAA0039541.1 (hypothetical protein E6C27_scaffold64G003660 [Cucumis melo var. makuwa] >TYK15294.1 hypothetical protein E5676_scaffold892G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 8.4e-29
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGER-DETPK 60
          MTTLQRSSISFRRQGSSG IWEDNVR LE KT ARATAS S+MSQEL++S  ER DETPK
Sbjct: 1  MTTLQRSSISFRRQGSSGFIWEDNVRVLEPKTSARATASASMMSQELNRSREERADETPK 60

Query: 61 SDGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSS 99
          SDGL    +SSS STPPER TPQKCSFSSVFGRCMGSSS
Sbjct: 61 SDGL---QNSSSTSTPPER-TPQKCSFSSVFGRCMGSSS 95

BLAST of CsaV3_5G037750 vs. NCBI nr
Match: OVA09109.1 (hypothetical protein BVC80_9097g206 [Macleaya cordata])

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-08
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
          M +LQRSSISFRRQGSSGLIW D  + LE KT +   +   V           RD+   S
Sbjct: 1  MNSLQRSSISFRRQGSSGLIWNDQRQVLELKTSSPPNSPIGV--------ENFRDKEDVS 60

Query: 61 DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGS 97
                +  S+P++PP     Q+C+ S+VFG+C+GS
Sbjct: 61 PHASSSSGGSNPTSPPSSARTQRCALSAVFGKCIGS 88

BLAST of CsaV3_5G037750 vs. NCBI nr
Match: KAB2613948.1 (hypothetical protein D8674_036264 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 67.8 bits (164), Expect = 6.3e-08
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
          MT+L+RSS+SFRRQGSSGLIWED ++ +E K   + T S       +++S GE    P  
Sbjct: 1  MTSLRRSSMSFRRQGSSGLIWEDKIQVVEKKPTLKVTVS-------INKSDGEEHPNPDE 60

Query: 61 DGLDEVNSSS-SPSTPPERTTP----QKCSFSSVFGRCM 95
             +  ++ S SP     R+ P     KCSFS+VFGRCM
Sbjct: 61 GSRERKDADSHSPPDSSLRSKPAQSVHKCSFSTVFGRCM 92

BLAST of CsaV3_5G037750 vs. NCBI nr
Match: TQD86898.1 (hypothetical protein C1H46_027515 [Malus baccata])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
          MT L+RSS+SFRRQGSSGLIWED ++A+E K     T S       +++S GE    P  
Sbjct: 1  MTALRRSSMSFRRQGSSGLIWEDKIQAVEKKPTLEVTVS-------INKSDGEEHPNPDE 60

Query: 61 DGLDEVNSSS-SPSTPPERTTP----QKCSFSSVFGRCM 95
             +  ++ S SP     R+ P     KCSFS+VFGRC+
Sbjct: 61 GSRERKDADSHSPPDSSLRSKPDHSVHKCSFSTVFGRCL 92

BLAST of CsaV3_5G037750 vs. ExPASy TrEMBL
Match: A0A0A0KU28 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633270 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
           MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS
Sbjct: 1   MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60

Query: 61  DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSSRPT 102
           DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSSRPT
Sbjct: 61  DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSSRPT 101

BLAST of CsaV3_5G037750 vs. ExPASy TrEMBL
Match: A0A5D3CWI8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00750 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.1e-29
Identity = 81/99 (81.82%), Postives = 85/99 (85.86%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGER-DETPK 60
          MTTLQRSSISFRRQGSSG IWEDNVR LE KT ARATAS S+MSQEL++S  ER DETPK
Sbjct: 1  MTTLQRSSISFRRQGSSGFIWEDNVRVLEPKTSARATASASMMSQELNRSREERADETPK 60

Query: 61 SDGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGSSS 99
          SDGL    +SSS STPPER TPQKCSFSSVFGRCMGSSS
Sbjct: 61 SDGL---QNSSSTSTPPER-TPQKCSFSSVFGRCMGSSS 95

BLAST of CsaV3_5G037750 vs. ExPASy TrEMBL
Match: A0A200QF63 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9097g206 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-08
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
          M +LQRSSISFRRQGSSGLIW D  + LE KT +   +   V           RD+   S
Sbjct: 1  MNSLQRSSISFRRQGSSGLIWNDQRQVLELKTSSPPNSPIGV--------ENFRDKEDVS 60

Query: 61 DGLDEVNSSSSPSTPPERTTPQKCSFSSVFGRCMGS 97
                +  S+P++PP     Q+C+ S+VFG+C+GS
Sbjct: 61 PHASSSSGGSNPTSPPSSARTQRCALSAVFGKCIGS 88

BLAST of CsaV3_5G037750 vs. ExPASy TrEMBL
Match: A0A5N5GF61 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_036264 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-08
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
          MT+L+RSS+SFRRQGSSGLIWED ++ +E K   + T S       +++S GE    P  
Sbjct: 1  MTSLRRSSMSFRRQGSSGLIWEDKIQVVEKKPTLKVTVS-------INKSDGEEHPNPDE 60

Query: 61 DGLDEVNSSS-SPSTPPERTTP----QKCSFSSVFGRCM 95
             +  ++ S SP     R+ P     KCSFS+VFGRCM
Sbjct: 61 GSRERKDADSHSPPDSSLRSKPAQSVHKCSFSTVFGRCM 92

BLAST of CsaV3_5G037750 vs. ExPASy TrEMBL
Match: A0A6J5UGS2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23890 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.2e-08
Identity = 46/104 (44.23%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 1  MTTLQRSSISFRRQGSSGLIWEDNVRALEAKTGARATASTSVMSQELSQSSGERDETPKS 60
          M  L RSSISFRRQGSSGLIWED V+ LE K   + T S       +++S  +   +   
Sbjct: 1  MNALPRSSISFRRQGSSGLIWEDRVQVLEQKRALQVTIS-------INKSDSQEHTSNLD 60

Query: 61 DGLDEVNSSSSPSTP-PERTTPQK-------CSFSSVFGRCMGS 97
          +   E     SPS P PE + P K       CSFS++FGRCM S
Sbjct: 61 ERFQERKDVDSPSPPLPETSVPSKPEKEDRRCSFSTLFGRCMRS 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52429.16.4e-45100.00hypothetical protein Csa_008360 [Cucumis sativus][more]
KAA0039541.18.4e-2981.82hypothetical protein E6C27_scaffold64G003660 [Cucumis melo var. makuwa] >TYK1529... [more]
OVA09109.12.8e-0842.71hypothetical protein BVC80_9097g206 [Macleaya cordata][more]
KAB2613948.16.3e-0844.44hypothetical protein D8674_036264 [Pyrus ussuriensis x Pyrus communis][more]
TQD86898.11.1e-0744.44hypothetical protein C1H46_027515 [Malus baccata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KU283.1e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633270 PE=4 SV=1[more]
A0A5D3CWI84.1e-2981.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A200QF631.4e-0842.71Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9097g206 PE=4 SV=1[more]
A0A5N5GF613.0e-0844.44Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
A0A6J5UGS25.2e-0844.23Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23890 PE=4 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031421Protein of unknown function DUF4666PFAMPF15697DUF4666coord: 1..53
e-value: 6.0E-10
score: 39.8
IPR031421Protein of unknown function DUF4666PANTHERPTHR33730OS05G0542732 PROTEIN-RELATEDcoord: 1..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..51
NoneNo IPR availablePANTHERPTHR33730:SF21SUBFAMILY NOT NAMEDcoord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G037750.1CsaV3_5G037750.1mRNA