CsaV3_5G037370 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G037370
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 29651570 .. 29651936 (-)
RNA-Seq Expression	CsaV3_5G037370
Synteny	CsaV3_5G037370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAAGTTTCTTGGTCTTCTTGTTTCTTTTCTTGTCCTCAAAGAGATTGTTTGAGTTCTCTGATGGATAATGATCTGCCTGTCATTCTGTACTGCAATGTTGAATTTCTTGTTGTTTCTACTTTGTCTGTCTTTGAAGTTCCTGTTTCATCATGAGAGTTGTTGTATTGACAGTGTTTGAATCAGCTGATGATATTGAAGTTATTTCCATATGTTTTACTGTGTTGGGTTGA

mRNA sequence

ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAATTCCTGTTTCATCATGAGAGTTGTTGTATTGACAGTGTTTGAATCAGCTGATGATATTGAAGTTATTTCCATATGTTTTACTGTGTTGGGTTGA

Coding sequence (CDS)

ATGGATCTTCGGAAATGTTTGGGTATGGTTCTCATTTGGGTTGCTTGCTTGCTTGTTTCCATGGCTACAGAAGCAGAAGCTCAGAGCTATGGCAGCTCTGATGCACCTGAGGCCTTACATTCCCACTCAATGCTCTTCAATTCCTGTTTCATCATGAGAGTTGTTGTATTGACAGTGTTTGAATCAGCTGATGATATTGAAGTTATTTCCATATGTTTTACTGTGTTGGGTTGA

Protein sequence

MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSCFIMRVVVLTVFESADDIEVISICFTVLG*

Homology

[Close]

BLAST of CsaV3_5G037370 vs. NCBI nr
Match: KAE8648896.1 (hypothetical protein Csa_008661 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSCFIMRVVVLTVF 60
          MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSCFIMRVVVLTVF
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSCFIMRVVVLTVF 60

Query: 61 ESADDIEVISICFTVLG 78
          ESADDIEVISICFTVLG
Sbjct: 61 ESADDIEVISICFTVLG 77

[Close]

BLAST of CsaV3_5G037370 vs. NCBI nr
Match: KAA0037478.1 (hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK01954.1 hypothetical protein E5676_scaffold808G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.5e-12
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSML 46
          M+L+KCLGMVLIWVACLL+S ATEAEAQSYGSSDAPEAL SHSML
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQSYGSSDAPEALCSHSML 45

[Close]

BLAST of CsaV3_5G037370 vs. ExPASy TrEMBL
Match: A0A0A0KS19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.7e-17
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFNSC 50
          MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLF  C
Sbjct: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSMLFKDC 49

[Close]

BLAST of CsaV3_5G037370 vs. ExPASy TrEMBL
Match: A0A5A7T3W0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00460 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-12
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  MDLRKCLGMVLIWVACLLVSMATEAEAQSYGSSDAPEALHSHSML 46
          M+L+KCLGMVLIWVACLL+S ATEAEAQSYGSSDAPEAL SHSML
Sbjct: 1  MNLQKCLGMVLIWVACLLISTATEAEAQSYGSSDAPEALCSHSML 45

The following BLAST results are available for this feature:

BLAST of CsaV3_5G037370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648896.1	4.3e-33	100.00	hypothetical protein Csa_008661 [Cucumis sativus]	[more]
KAA0037478.1	5.5e-12	88.89	hypothetical protein E6C27_scaffold277G00690 [Cucumis melo var. makuwa] >TYK0195...	[more]

BLAST of CsaV3_5G037370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G037370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS19	4.7e-17	95.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630950 PE=4 SV=1	[more]
A0A5A7T3W0	2.6e-12	88.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_5G037370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G037370.1	CsaV3_5G037370.1	mRNA