CsaV3_5G036780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G036780
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Locationchr5: 28935755 .. 28939247 (+)
RNA-Seq ExpressionCsaV3_5G036780
SyntenyCsaV3_5G036780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACATTATACGGTAAAAAAAAAATGTGGAATGGATCCTTAATTAAACTATGGAATTCCTTATCTAATAAAAAAAATTAATTGATGTATTATTATTAGAAAATCTAAATTATGAATCTCCAAACAATCAAATTAGTTAATAACACTTCTAAGGTAGAAATAAAATAATATTATAATAGGGGTTATTTTTAAAAAGATAAAGAGAGAGAGAAAAAAAGATTAATGCAGAATTGAAATAGCCGAAGCCGAAGCCGAAGCCGAAGCCGAATACATTATATTTTTATTATATTTATAGTTATTCCCTTTCTTCCTCACAAACCTAAATTAAACTTTGTCACAGCAACAGTTTGAAGAATCATTCATTCCAGTTTCCATTTTTCATTTTCCAATTTTCAATTTCCATTTTCCATTTCCATTTCCATTCCACTCATCTTCATCATCATCATCATCATCATCATCGTAATCTTCTTCTTCTTCTTCCTCCTCCTTCATCTCATCAGTCATCTGTTACTGTGAAATGAAACAGAATTCCACTTCATTACACACAATTGCTTTTGCTCTAATAAAATTTTCTTCTTTTTCCCAACACTGCATAATCCCCACATCCCATAACAACTAACTCTCTCTCTCTCTCAATTTTCATCATAAACACACCCTCTTCTTGGCTCTTTCTATCTCAACCTCTCTTCTTCTAATTTCCTCTCATCACCTTTTTTTTTCTTTTTCTTTTTTTTTTTTTCTTTTTGAGCTTTTTCCAATCAACAAAATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACTCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTTCCCTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTTACCGATCGTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGGAAAGGAGAATCCTTGATCGCCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGCGATGCTGGGGATGGCTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCTGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGGTAAATCTCTCTCTAAATCTCTTTTTCCATTCTTCCATTTTTGTTTTCTTGTGCTTCTCAACGAATTCCGAATCATGAGCAGAAATTAATGGGATATCTGTTTACTCTGTTTCTTTCTGTTTAATGATTTGGTTACTTGTTTCTACGTGTATAAATTTGTAAAATTTTTATGAGTAGTTTTTATTTTAGTTCTCTTTGAAGATCTTGCAGCAAATTTAACGAAACATGTTCATTAGGTATGTTGTTCGAAAACTTACCATCCTTTCATGTTATAACTCTGTTTTTCTCCTCTCTCTCTCTCCTTTCTCCAACAAGGAGGGAGTGACTTATATATAAAAGTAGAATTTAGGACCGTTTGTAAATGGCATTTCGAGTGCTTAAAAGATAAGTTTTTGTTTTTTTAAGTGTTTGTGTTTAGTAAGGAGCTTAAGTATTTAAAAAGGGGTTCAAGTGTTTAGAAAGCCATTCCAAACAGGCTTTGTGCTGTTAAAACATGCACATCTATATGTATTCTAACTGTGTTTTTTTAGCAACAAGATCATTTTCTAAACCCACCTCTTGGAATTCTCCTCACTTTGAAACCAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAGACATTCCTTCTCTTCATTCTTCTCCAATTCTCCCTCTGATCACTCTTCTCCTCCTGAAAACTCGGTCTTGACCACTTGAAAAAATATGATATCTTTGCTAGATTTCAGAGGTCTGTTATGTTATCTGTAAGTTTCATATAGTTGTTATCATGGTGGTAATGCAATGAATCTTGCACTAAATAGAACACAAAAGTGCATAGTTGTAATAGGAATTTTCTGTTCTAGCCTTAAGCTGGGTTTAGTGTAAGATTTATCAAGTTCAAAGATAGTTGGATATTGATCTTCTGTATATTGCTTAGAAGATGTGTAACTTTCATCTATCCAAATATCTGCTGAAACAAGAGTTAGCTTGTCTTATTTCATAGCAGCTGTATTATATGTTGGGATACAAGAGTTCAGTCTCTTCTTTTACTGTCTATCTCAAAGAGTTTTACGAAACAAATGAAATCGTTCATCTGAGTAAGTTCTTGCGAAATTCCACGATGGTGAAACAGGCAAAATGCATGTAATGCTTCCTCTTTCTACATTACTGTCATTTGTCTTCATCTTTGAACATTTTCAGTGATTTGGATCGTCTCCAATTATGAGATGGGTTTCATTGAATGGAAGTCATTTATTTGATTGAGACGAATTTGATGGTGAATATGTAGGGAGAACCAGATATAAGTAAAGTCGGGACCCCACATGACACGAACAATATAAGCAGAAGATGAAAGTTAGTGAAGCGTAGTTCCATTCTCATCACATTTTTAGCAAAAAAGAAAGCCAGAGAGCAATGGAGATGAACACTAAAAACTGAAAAGTGGGAAGGAAAGAGCAAAGCAGTGTAAGAATTACCAAAACTTGAGAAGAGTTAAAAGAGAAAAAGAAGCATTGATGATTGATGGAGAAGAGAAAAGGATGAATATGAAAACAGTACCAATTGAGACTCAGTTGTTAAAGGAGAGGGATTTTCTTCTTCCCAGATGACATTAAGAAAAAGGTATGCATTAAAAGGGATGAACAAAATGAATAGGTGAGACCAATAACCCCCACCCCCTTTTTGTCTTTTCATATAGGAATTGTTAGGCCTAAGTGAATGTGTAGGAGATTGAGTCCAATTACATATCATTGCAAATGCCAAAAACAGATGTGACAAAGTAGTGGTAAGGCAAAAACATGCACTTTTATTATAAAGATTAAGGGGGTTTCAACTTGAATATATATTATATATATGCTTTTGTAGGAAGG

mRNA sequence

ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACTCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTTCCCTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTTACCGATCGTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGGAAAGGAGAATCCTTGATCGCCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGCGATGCTGGGGATGGCTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCTGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAG

Coding sequence (CDS)

ATGTTGGGTCTCCGAGATGTTCTGTTTATAGCTCCCACACCCTCTTCTCTTCACCAACAGACTCAAATCATTTCTTCTGATCATCATCCATCTCTTCCTCTTCCCTCCTCCACCGCTCTCGGCGTTAGCGTCGGCATTTTCCCCCTTCTCGCTGCAACCCCATGTCTCCCTCCCTCCCAGCCCCCGCCAAATAATCACACACCTGACGATGTTACCGATCGTACTCGCACTTTCGACAATCTTAAGAGAACCCAAGATTTTGGCTTTGGGAAAGGAGAATCCTTGATCGCCGGTCCCGGAAATAATGGCTCCGACGAACATGTGAAAGGCGATGCTGGGGATGGCTCTATGGCTGTATGTAGGGACTGTGGAAACAGAGCAAAAAAGGAGTGCGAGTATCGGAGGTGCAGGACTTGTTGCAAGGGACGTGGGAATCATTGCTCTACGCACGTGAAGAGCACGTGGGTGCCTGCGGCTCGCCGCCGTGAGCGGCAGATGTTGGTGGTTATGGACGGCGTTGCCACTGCTAGTGGCGACGGAGGGTCTTCCGGTTCTTCTTCTGCTGGTGCTAAAAGGCCTAGAGTTTTGATTCCTTCACAGAGTGCTGCCGCGGCCGCCGCTGCTTCCACTTCCAATGCCACAACTCCCCGGAGTTTTGAAACAACCTCTAGCCATCAAGATGCAAGCTTCAAGAAGTCATTACCAGGGCATGTTCGAGCTCCAGCCGTGTTCAGGTGCCATAGAGTGACTGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAATATTGGTGGTCATGTCTTCAAAGGCTTCCTCTATGATCAAGGAGCTGATGACAAAAATGCATTCCCATCTATTTCACATCTCCATTTGGACAGTGGTAACCACCACAGGGAATAG

Protein sequence

MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNHHRE*
Homology
[Close]
BLAST of CsaV3_5G036780 vs. NCBI nr
Match: XP_004142483.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical protein Csa_008495 [Cucumis sativus])

HSP 1 Score: 603.6 bits (1555), Expect = 9.4e-169
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HRE
Sbjct: 301 HRE 303

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BLAST of CsaV3_5G036780 vs. NCBI nr
Match: XP_008446964.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo])

HSP 1 Score: 602.1 bits (1551), Expect = 2.7e-168
Identity = 302/303 (99.67%), Postives = 302/303 (99.67%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLI GPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HRE
Sbjct: 301 HRE 303

[Close]
BLAST of CsaV3_5G036780 vs. NCBI nr
Match: KAA0034761.1 (protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa])

HSP 1 Score: 591.7 bits (1524), Expect = 3.7e-165
Identity = 302/319 (94.67%), Postives = 302/319 (94.67%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLI GPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ-------------- 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ              
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDQFLNPPLGILMTL 240

Query: 241 --DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 300
             DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Sbjct: 241 KPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 300

Query: 301 NAFPSISHLHLDSGNHHRE 304
           NAFPSISHLHLDSGNHHRE
Sbjct: 301 NAFPSISHLHLDSGNHHRE 319

[Close]
BLAST of CsaV3_5G036780 vs. NCBI nr
Match: XP_038892899.1 (protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida])

HSP 1 Score: 557.0 bits (1434), Expect = 1.0e-154
Identity = 283/303 (93.40%), Postives = 290/303 (95.71%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSS ALGVSVGIFPLL ATPCLPP Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSAALGVSVGIFPLLTATPCLPPPQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           P P N T DDVTDR+R+ +NLKRTQDFGFGKG+SL+ G GNN SDE VKGDAGDGSMAVC
Sbjct: 61  PLP-NQTADDVTDRSRSLENLKRTQDFGFGKGDSLMGGAGNNVSDEQVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQS AAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAINSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HR+
Sbjct: 301 HRD 302

[Close]
BLAST of CsaV3_5G036780 vs. NCBI nr
Match: XP_022956997.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata])

HSP 1 Score: 508.1 bits (1307), Expect = 5.4e-140
Identity = 261/303 (86.14%), Postives = 279/303 (92.08%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPP N  PD+++DR+R+ +NLKRTQDFGFGKG+SLI G GN+G D+ VKGD GDGS+ VC
Sbjct: 61  PPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS---- 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRP+VLIPSQ+ AAAAAASTSNATTPRSFETTSSHQDASFKKSLPG V+A
Sbjct: 181 GSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Sbjct: 241 PAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH 295

Query: 301 HRE 304
            R+
Sbjct: 301 LRD 295

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 5.6e-55
Identity = 142/309 (45.95%), Postives = 179/309 (57.93%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 3   MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------G 62

Query: 61  PPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDG 120
            P  N    D+       R +  +N   TQ   F        G  +N S       +G  
Sbjct: 63  TPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG----SGSGAS 122

Query: 121 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAT 180
             A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        
Sbjct: 123 GTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTG 182

Query: 181 ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 240
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 183 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 242

Query: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 243 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 291

Query: 301 HL-DSGNHH 302
           HL  S N+H
Sbjct: 303 HLGGSANNH 291

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy Swiss-Prot
Match: Q9M2U4 (Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-31
Identity = 78/174 (44.83%), Postives = 100/174 (57.47%), Query Frame = 0 

Query: 119 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASG 178
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR---------------- 99

Query: 179 DGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 238
                 SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG +
Sbjct: 100 -----SSSSPSERKKKLKIDKQSSPNVSL-----------LPTTTSRQERGFREGLPGKI 159

Query: 239 RAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 292
            APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 EAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.3e-31
Identity = 80/164 (48.78%), Postives = 103/164 (62.80%), Query Frame = 0 

Query: 120 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 179
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 180 GGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 239
           GG SGS  AG       IP +        ++S++  P S        +ASF    PG V 
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLP-SHSAGLEMGEASF----PGEVS 213

Query: 240 APAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 283
           + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 SDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy Swiss-Prot
Match: Q9SD40 (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-28
Identity = 99/267 (37.08%), Postives = 130/267 (48.69%), Query Frame = 0 

Query: 18  HQQTQII--SSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQPPPNNHTPDDVTDRT 77
           H Q +I+     H   L L SS A G+ VG                 P+NH   D++   
Sbjct: 75  HNQQEIMFQHQQHQQRLDLYSSAA-GLGVG-----------------PSNHNQFDIS--- 134

Query: 78  RTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVK-GDAGDGSMAV-CRDCGNRAKKECEY 137
                           GE+  AG G   +   ++ G +G GS  V C+DCGN+AKK+C +
Sbjct: 135 ----------------GETSTAGAGRAAAMMMIRSGGSGGGSGGVSCQDCGNQAKKDCSH 194

Query: 138 RRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRP 197
            RCRTCCK RG  CSTHV+STWVPAA+RRERQ  +      T    G S        KR 
Sbjct: 195 MRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQLPRGESV------PKRH 254

Query: 198 RVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAIS 257
           R  +P+ S++       S+          S  +  +F    P  V + AVFRC RV+++ 
Sbjct: 255 RENLPATSSSLVCTRIPSH----------SGLEVGNF----PAEVSSSAVFRCVRVSSVE 284

Query: 258 SGEGELAYQATVNIGGHVFKGFLYDQG 281
            GE E AYQ  V+IGGH+FKG LYD G
Sbjct: 315 DGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.8e-27
Identity = 81/204 (39.71%), Postives = 111/204 (54.41%), Query Frame = 0 

Query: 86  DFGFGKGES-----LIAGPGNNGSDEHVKGDAGDGSMAVCRDCGNRAKKECEYRRCRTCC 145
           D G G G S     + AG         V   +G G ++ C+DCGN+AKK+C++ RCRTCC
Sbjct: 91  DVGLGVGPSRSGFDISAGDHEASRSGFVMMRSGGGGIS-CQDCGNQAKKDCQHMRCRTCC 150

Query: 146 KGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ 205
           K RG  C THVKSTWVPAA+RRERQ  +           G ++ +++   KR R     +
Sbjct: 151 KSRGFQCQTHVKSTWVPAAKRRERQQQL---AALQQQQQGHNNNNNNHKNKRQR-----E 210

Query: 206 SAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELA 265
             +A++  ST   +     E              P  VR  AVF+C ++++I   E +LA
Sbjct: 211 DPSASSLVSTRLPSNTNGLEV----------GKFPSKVRTSAVFQCIQMSSIEDDEDQLA 270

Query: 266 YQATVNIGGHVFKGFLYDQGADDK 285
           YQA V+IGGHVFKG LYDQG + +
Sbjct: 271 YQAAVSIGGHVFKGILYDQGHESQ 275

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy TrEMBL
Match: A0A0A0KWX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1)

HSP 1 Score: 603.6 bits (1555), Expect = 4.6e-169
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HRE
Sbjct: 301 HRE 303

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy TrEMBL
Match: A0A1S3BFS5 (protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 1.3e-168
Identity = 302/303 (99.67%), Postives = 302/303 (99.67%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLI GPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH
Sbjct: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300

Query: 301 HRE 304
           HRE
Sbjct: 301 HRE 303

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy TrEMBL
Match: A0A5D3CCT8 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003120 PE=3 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 1.8e-165
Identity = 302/319 (94.67%), Postives = 302/319 (94.67%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ
Sbjct: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLI GPGNNGSDEHVKGDAGDGSMAVC
Sbjct: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIGGPGNNGSDEHVKGDAGDGSMAVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ-------------- 240
           GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQ              
Sbjct: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDQFLNPPLGILMTL 240

Query: 241 --DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 300
             DASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK
Sbjct: 241 KPDASFKKSLPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDK 300

Query: 301 NAFPSISHLHLDSGNHHRE 304
           NAFPSISHLHLDSGNHHRE
Sbjct: 301 NAFPSISHLHLDSGNHHRE 319

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy TrEMBL
Match: A0A6J1GXY1 (protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC111458506 PE=3 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.6e-140
Identity = 261/303 (86.14%), Postives = 279/303 (92.08%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           MLGLRDVLFIAPTPSSLHQ TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL   Q
Sbjct: 1   MLGLRDVLFIAPTPSSLHQHTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCL---Q 60

Query: 61  PPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAVC 120
           PPP N  PD+++DR+R+ +NLKRTQDFGFGKG+SLI G GN+G D+ VKGD GDGS+ VC
Sbjct: 61  PPP-NQMPDELSDRSRSLENLKRTQDFGFGKGDSLIGGGGNHGYDDQVKGDGGDGSLGVC 120

Query: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGDG 180
           RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVAT+    
Sbjct: 121 RDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATS---- 180

Query: 181 GSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVRA 240
           GSSGSSSAGAKRP+VLIPSQ+ AAAAAASTSNATTPRSFETTSSHQDASFKKSLPG V+A
Sbjct: 181 GSSGSSSAGAKRPKVLIPSQTTAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGQVQA 240

Query: 241 PAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLHLDSGNH 300
           PAVF+CHRVTAISSGEGEL YQATVNIGGHVFKGFLYDQGAD KNA PSISHLHL+SGNH
Sbjct: 241 PAVFKCHRVTAISSGEGELTYQATVNIGGHVFKGFLYDQGADVKNALPSISHLHLESGNH 295

Query: 301 HRE 304
            R+
Sbjct: 301 LRD 295

[Close]
BLAST of CsaV3_5G036780 vs. ExPASy TrEMBL
Match: A0A6J1CEG6 (protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988 PE=3 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.9e-139
Identity = 268/309 (86.73%), Postives = 279/309 (90.29%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQ-TQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPS 60
           MLGLRDVLFIAPTPSSLHQQ TQIISSDHHPSLPLPSS ALGVSVGIFPLLAATPCLP  
Sbjct: 5   MLGLRDVLFIAPTPSSLHQQTTQIISSDHHPSLPLPSSAALGVSVGIFPLLAATPCLP-- 64

Query: 61  QPPPNNHTPDDVTDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDGSMAV 120
           QPPP      +V++R R  DNLKRTQDFGFGKG+SLIAG GNN  DE V+GDAGD SM V
Sbjct: 65  QPPPPPPPAAEVSER-RGVDNLKRTQDFGFGKGDSLIAG-GNNALDEPVRGDAGDSSMGV 124

Query: 121 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 180
           CRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQMLVVMDGVATASGD
Sbjct: 125 CRDCGNRAKKECDYRRCRTCCKGRGNHCSTHVKSTWVSAARRRERQMLVVMDGVATASGD 184

Query: 181 GGSSGSSSAGAKRPRVLIPSQSAAAAAA-----ASTSNATTPRSFETTSSHQDASFKKSL 240
           GGSSGSSSAGAKRPRVLIPSQS AAAAA     ASTSNATTPRSFET+S+HQDASFKKSL
Sbjct: 185 GGSSGSSSAGAKRPRVLIPSQSTAAAAAASASHASTSNATTPRSFETSSNHQDASFKKSL 244

Query: 241 PGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHLH 300
           PG VRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKN FPS+SHLH
Sbjct: 245 PGQVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGIDDKNGFPSVSHLH 304

Query: 301 LDSGNHHRE 304
           L+SGNHH +
Sbjct: 305 LESGNHHHK 309

[Close]
BLAST of CsaV3_5G036780 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 216.1 bits (549), Expect = 3.9e-56
Identity = 142/309 (45.95%), Postives = 179/309 (57.93%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 3   MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------G 62

Query: 61  PPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDG 120
            P  N    D+       R +  +N   TQ   F        G  +N S       +G  
Sbjct: 63  TPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG----SGSGAS 122

Query: 121 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAT 180
             A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        
Sbjct: 123 GTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTG 182

Query: 181 ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 240
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 183 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 242

Query: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 243 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 291

Query: 301 HL-DSGNHH 302
           HL  S N+H
Sbjct: 303 HLGGSANNH 291

[Close]
BLAST of CsaV3_5G036780 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 216.1 bits (549), Expect = 3.9e-56
Identity = 142/309 (45.95%), Postives = 179/309 (57.93%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 3   MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------G 62

Query: 61  PPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDG 120
            P  N    D+       R +  +N   TQ   F        G  +N S       +G  
Sbjct: 63  TPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG----SGSGAS 122

Query: 121 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAT 180
             A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        
Sbjct: 123 GTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTG 182

Query: 181 ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 240
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 183 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 242

Query: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 243 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 291

Query: 301 HL-DSGNHH 302
           HL  S N+H
Sbjct: 303 HLGGSANNH 291

[Close]
BLAST of CsaV3_5G036780 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 216.1 bits (549), Expect = 3.9e-56
Identity = 142/309 (45.95%), Postives = 179/309 (57.93%), Query Frame = 0 

Query: 1   MLGLRDVLFIAPTPSSLHQQTQIISSDHHPSLPLPSSTALGVSVGIFPLLAATPCLPPSQ 60
           M+GLRDV  +A  P+  HQ   +IS   H +    ++ ALG  VG+ PLL A        
Sbjct: 90  MVGLRDVFLVA--PAYHHQNAGVISGSDHMNSNAAAAAALG--VGVIPLLTA-------G 149

Query: 61  PPPNNHTPDDV-----TDRTRTFDNLKRTQDFGFGKGESLIAGPGNNGSDEHVKGDAGDG 120
            P  N    D+       R +  +N   TQ   F        G  +N S       +G  
Sbjct: 150 TPQQNVEDSDINFLGNNRRWQNNNNNHETQYLHFKSTNQTTVGTSSNNSG----SGSGAS 209

Query: 121 SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVAT 180
             A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ++        
Sbjct: 210 GTATCQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVM-----PTG 269

Query: 181 ASGDGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATT-PRSFETTSSHQD-ASFKKS 240
           A+   GSS S+S+G K+PR++   Q     A + TS + T P+SFET+SS QD    +++
Sbjct: 270 ANPTAGSSLSTSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREA 329

Query: 241 LPGHVRAPAVFRCHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGADDKNAFPSISHL 300
            PG VRA AVF+C RVTA+  G+ E AYQA V IGGHVFKGFLYDQG + K  FPS+S L
Sbjct: 330 WPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSMSDL 378

Query: 301 HL-DSGNHH 302
           HL  S N+H
Sbjct: 390 HLGGSANNH 378

[Close]
BLAST of CsaV3_5G036780 vs. TAIR 10
Match: AT3G54430.1 (SHI-related sequence 6 )

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-32
Identity = 78/174 (44.83%), Postives = 100/174 (57.47%), Query Frame = 0 

Query: 119 VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASG 178
           VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                
Sbjct: 40  VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSSATR---------------- 99

Query: 179 DGGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHV 238
                 SSS   ++ ++ I  QS+   +              TT+S Q+  F++ LPG +
Sbjct: 100 -----SSSSPSERKKKLKIDKQSSPNVSL-----------LPTTTSRQERGFREGLPGKI 159

Query: 239 RAPAVFRCHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGADDKNAFPSIS 292
            APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G D   AFP +S
Sbjct: 160 EAPAVFKRTRVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181

[Close]
BLAST of CsaV3_5G036780 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-32
Identity = 80/164 (48.78%), Postives = 103/164 (62.80%), Query Frame = 0 

Query: 120 CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQMLVVMDGVATASGD 179
           CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M    + SG 
Sbjct: 94  CRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHM----STSGG 153

Query: 180 GGSSGSSSAGAKRPRVLIPSQSAAAAAAASTSNATTPRSFETTSSHQDASFKKSLPGHVR 239
           GG SGS  AG       IP +        ++S++  P S        +ASF    PG V 
Sbjct: 154 GGGSGSGGAGGGGSS--IPKRHRDPTLPGTSSSSRLP-SHSAGLEMGEASF----PGEVS 213

Query: 240 APAVFRCHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQGAD 283
           + A+FRC +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG +
Sbjct: 214 SDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPE 246

The following BLAST results are available for this feature:
BLAST of CsaV3_5G036780 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142483.19.4e-169100.00protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN52321.1 hypothetical pro... [more]
XP_008446964.12.7e-16899.67PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo][more]
KAA0034761.13.7e-16594.67protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa] >TYK09315.1 protein... [more]
XP_038892899.11.0e-15493.40protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida][more]
XP_022956997.15.4e-14086.14protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita moschata][more]
BLAST of CsaV3_5G036780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q94CK95.6e-5545.95Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S... [more]
Q9M2U41.5e-3144.83Protein SHI RELATED SEQUENCE 6 OS=Arabidopsis thaliana OX=3702 GN=SRS6 PE=1 SV=1[more]
O655173.3e-3148.78Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1[more]
Q9SD402.0e-2837.08Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2[more]
K4B6C93.8e-2739.71Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ... [more]
BLAST of CsaV3_5G036780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWX64.6e-169100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623840 PE=3 SV=1[more]
A0A1S3BFS51.3e-16899.67protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo OX=3656 GN=LOC103489517 PE=3 S... [more]
A0A5D3CCT81.8e-16594.67Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1GXY12.6e-14086.14protein LATERAL ROOT PRIMORDIUM 1-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
A0A6J1CEG62.9e-13986.73protein LATERAL ROOT PRIMORDIUM 1 OS=Momordica charantia OX=3673 GN=LOC111009988... [more]
BLAST of CsaV3_5G036780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G12330.23.9e-5645.95Lateral root primordium (LRP) protein-related [more]
AT5G12330.13.9e-5645.95Lateral root primordium (LRP) protein-related [more]
AT5G12330.43.9e-5645.95Lateral root primordium (LRP) protein-related [more]
AT3G54430.11.0e-3244.83SHI-related sequence 6 [more]
AT4G36260.12.3e-3248.78Lateral root primordium (LRP) protein-related [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006511SHORT INTERNODES, C-terminalTIGRFAMTIGR01624TIGR01624coord: 234..280
e-value: 3.4E-26
score: 88.9
NoneNo IPR availablePFAMPF05142DUF702coord: 118..282
e-value: 3.5E-57
score: 193.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..74
NoneNo IPR availablePANTHERPTHR31604:SF28PROTEIN SHI RELATED SEQUENCE 6coord: 1..296
IPR006510Zinc finger, lateral root primordium type 1TIGRFAMTIGR01623TIGR01623coord: 119..161
e-value: 1.4E-24
score: 83.8
IPR007818SHI protein familyPANTHERPTHR31604PROTEIN LATERAL ROOT PRIMORDIUM 1coord: 1..296

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G036780.1CsaV3_5G036780.1mRNA