CsaV3_5G036370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G036370
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 28672571 .. 28673102 (-)
RNA-Seq ExpressionCsaV3_5G036370
SyntenyCsaV3_5G036370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCAACATGCGGCCTCCATCGAGGAATTCCCGTATCAAATTCAGTTGGTGTTCATCAAAGAGCACCTACGTCCCGCCCTTTTGCATACCTCCATAAATACCGCCATTTTTATGCTACTCCCCTCTCCTCTGCCGCTCTCCCCTTCCAGGTTTGACTCTCTACTTCTTCCCCATTTGAATCTGGTTTATGCCCAATCTTTTTTTTTTTCTTTTGCATCTGTCTTTCTGCTTATTTTGATACTTGTTTTACTTCTCAATATGATTGTTTGGGTTTGGTCACTGTGATTAATTAGATTTGGTCGAATATTCTATAACTGAAATGTTGTTAATAACTGCATTGGTTTTGAGCTGCCGATTCGAAATGAATCACTAGAATTGGATTTTCTATACAGATCTTCTCTGAATAGTTTTGAGATCGAGTGTTTACTTCAGTAGTTTAGCTGATTGAGTTTTTTTGTTTTTTTTTTTTTGTTTTTAATGCAGAGTTGGATGGGAGGTGGAAACTATATATGGGTGTAATTATATCTAA

mRNA sequence

ATGGGGCAACATGCGGCCTCCATCGAGGAATTCCCGTATCAAATTCAGTTGGTGTTCATCAAAGAGCACCTACGTCCCGCCCTTTTGCATACCTCCATAAATACCGCCATTTTTATGCTACTCCCCTCTCCTCTGCCGCTCTCCCCTTCCAGAGTTGGATGGGAGGTGGAAACTATATATGGGTGTAATTATATCTAA

Coding sequence (CDS)

ATGGGGCAACATGCGGCCTCCATCGAGGAATTCCCGTATCAAATTCAGTTGGTGTTCATCAAAGAGCACCTACGTCCCGCCCTTTTGCATACCTCCATAAATACCGCCATTTTTATGCTACTCCCCTCTCCTCTGCCGCTCTCCCCTTCCAGAGTTGGATGGGAGGTGGAAACTATATATGGGTGTAATTATATCTAA

Protein sequence

MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPSRVGWEVETIYGCNYI*
Homology
[Close]
BLAST of CsaV3_5G036370 vs. NCBI nr
Match: KGN52280.1 (hypothetical protein Csa_008577 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPSRVGWEVETIY 60
          MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPSRVGWEVETIY
Sbjct: 1  MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPSRVGWEVETIY 60

Query: 61 GCNYI 66
          GCNYI
Sbjct: 61 GCNYI 65

[Close]
BLAST of CsaV3_5G036370 vs. NCBI nr
Match: XP_031741996.1 (aminodeoxychorismate synthase, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPS 51
          MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPS
Sbjct: 1  MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPS 50

[Close]
BLAST of CsaV3_5G036370 vs. ExPASy TrEMBL
Match: A0A0A0KRK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623440 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPSRVGWEVETIY 60
          MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPSRVGWEVETIY
Sbjct: 1  MGQHAASIEEFPYQIQLVFIKEHLRPALLHTSINTAIFMLLPSPLPLSPSRVGWEVETIY 60

Query: 61 GCNYI 66
          GCNYI
Sbjct: 61 GCNYI 65

The following BLAST results are available for this feature:
BLAST of CsaV3_5G036370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52280.12.4e-29100.00hypothetical protein Csa_008577 [Cucumis sativus][more]
XP_031741996.11.5e-18100.00aminodeoxychorismate synthase, chloroplastic isoform X2 [Cucumis sativus][more]
BLAST of CsaV3_5G036370 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G036370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRK31.2e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623440 PE=4 SV=1[more]
BLAST of CsaV3_5G036370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G036370.1CsaV3_5G036370.1mRNA