CsaV3_5G035430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G035430
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 27982382 .. 27984117 (+)
RNA-Seq ExpressionCsaV3_5G035430
SyntenyCsaV3_5G035430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTAGACAATTGAAACCTCATAATTCAACCAAAATGGCGGCCTTCAATCTCGTTGCGGATATGTATGACCCGGCCTTGAAGCCTCGCTTGCTACATAAACTTCTTAGGGAGCACGTTCCCGACGATAAGCGTGCATTTTCTGATTATTCAGAACTTTCAAATGTGGTTTCTATGATCACATCCCACGATCTTCTCTCTGAATCCTCGTCTTCCAAGGACCAAAAGCTGATTGATAGCTGGAAATCCGCTGTTGATTCCTGGGTCAACCGTTTGTTTCTTCTTCTCTCCAACGATATGGTATAAGCATGCATTAAATTCTATTTAAATAATTTTTTTAATAATACATAGCTTTTGCTTTATACTCCCGTGGATTTGACTATTTGTCGGCTGCCGGGCTTATGTGTAGCTTGTTCGAAGAACAGCTGGAACGAAGTTCAGTGGAACTTGTTAAGTTTCATAATCAATGAGTTCGCTGCTGGTTATTGAGAGAAAATTTATAGTTAGTGTTAATCTAGAAAGTTTGTCGCCTTAGAGCGCCCTTTGCGCTTTGAAAACACCGTTTAATTCTTAGAAACTGAACATTTGAACCTTGCTTGCATATTTGGCAATTCATTGGCATGCAGGAAGATAGGGAATAATATTGACTGTCTTTATTACTTTGTTTTTTAGATATTGCTCAACTTCCTTTTGTGGGTTACTAATTTTAGCATCCAATCTTTCTAAAGCCTGATAAATGTTGGGCGGGAATCATTTTACTTGGAGTGACTTGTCAACGATGCAGCTCTAGTCGTTTCTTGGCATCATATACAGAATGGCTTCACAAGCTTTTACCTCACATGCAGGTAACAGTTAGTTTTTTATGGGATTGATTCTATATTATTTCTTTACATGTATTAAGTGGCAAAAATGTTAAATTATAGTGTACACATGAAGAAGAATAAGAGTTAAATGATAAGTTATTCCATCAGAACTAAGATACCGGTTACTGTTTGGGACACATAACTGCAATAATTCAACTATGCTTTTGAGCATGTGATGTGGCTGGATCGTCTTTGACAGTCGACCTGTTTGACTACAGTAAATATGTTTGTTCTGAAATTTGGGTATGATTGGTTGTAAGATATTCATCAAAATGAGTTCTGGACATTATTTGTGACAATAAGTGATTATTGTTTCTTGGAAAGAATGCAAAATCACGCATTGGGGGTTTCCAAGCTCTTATTCTTTTCATTAATATAGGATTGAACAAGTAAGATAAACTACGGATGAAATAGCAGGTCTAACCAGCTCTCCTCGTACATGAGGGTCCCCAAAGACATGCATCGGGCATGTATCTGATTAGCATAAGATAGCCTTTGGCAACACTTAATGATTGTGGAGCTACTGAAGGACCTAATGCACTGCTATTCTTGAGCATGGTTATCTGATATTTTATCAAGTGTTATACAAAGTGCAATTTTTTTTTCTTCTGAAGACACAAAAGAATATATTGATCACAAATAGTGTGTGACGTAGTTCCAGAGCAATGTCAAGTTCCTTCTTTTTCTGTTCCTTTTATTTATATTGTTTCTGTCTTTAGCTTTACAACTTATAATCATCAATGCTTTTTTTTATACTTGAATGCTACCAAGAATTTTACAACGTTTTCATTTTTTGTGTTTTTATTGTTCAATAGACAGATTCTCAGTTTCTGAAGGTGGCCTCTTGTGCTTCAATCTATGATTTATTCTCGAG

mRNA sequence

TCGTTTCTTGGCATCATATACAGAATGGCTTCACAAGCTTTTACCTCACATGCAGACAGATTCTCAGTTTCTGAAGGTGGCCTCTTGTGCTTCAATCTATGA

Coding sequence (CDS)

TCGTTTCTTGGCATCATATACAGAATGGCTTCACAAGCTTTTACCTCACATGCAGACAGATTCTCAGTTTCTGAAGGTGGCCTCTTGTGCTTCAATCTATGA

Protein sequence

SFLGIIYRMASQAFTSHADRFSVSEGGLLCFNL*
Homology
[Close]
BLAST of CsaV3_5G035430 vs. NCBI nr
Match: KAE8648821.1 (hypothetical protein Csa_023668, partial [Cucumis sativus] >KAE8648822.1 hypothetical protein Csa_023654, partial [Cucumis sativus] >KAE8648824.1 hypothetical protein Csa_023677, partial [Cucumis sativus] >KAE8648827.1 hypothetical protein Csa_023659, partial [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 2.5e-09
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 

Query: 1  SFLGIIYRMASQAFTSHADRFSVSEGGLLCFNL 34
          SFLGIIYRMASQAFTSHADRFSVSEGGLLCFNL
Sbjct: 1  SFLGIIYRMASQAFTSHADRFSVSEGGLLCFNL 33

The following BLAST results are available for this feature:
BLAST of CsaV3_5G035430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648821.12.5e-09100.00hypothetical protein Csa_023668, partial [Cucumis sativus] >KAE8648822.1 hypothe... [more]
BLAST of CsaV3_5G035430 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G035430 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G035430 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G035430.1CsaV3_5G035430.1mRNA