CsaV3_5G034360 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G034360
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRibulose bisphosphate carboxylase small subunit
Locationchr5: 27339882 .. 27341598 (+)
RNA-Seq ExpressionCsaV3_5G034360
SyntenyCsaV3_5G034360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTAAATTGGTTTGTGAATGGATAAAATGAGGATAGTAAACAGCTTATAAATAGACTACCATTTCACAGTGCAATGCCTCTCAGACTCAACACCAAGAGCTTCTTCAAACTACTCTACTAGCTATTAGTAAATCCTTCTAATCCTCCAAGAAAAAAAAGAGGCATAAATGGCTTCATCCATTCTCTCATCCGCCGCTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCTTCCGCTGGTTTCCCCATCACTCGCAAGAACAACGTCGACATCACCACTTTGGCTAGCAATGGTGGAAAAGTTCAGTGCATGAAGGTATCAAATTTCAATTTATATATTAATTAATTCTATATTTGTTTGATTTAATGATTAATTATTTCTCTCTTTTTTTTTATAAAAAATAAAAAATTAGGTGTGGCCACCACTTGGATTGAGGAAGTTCGAGACTCTTTCTTACCTGCCTGATATGAGTAACGAACAATTGTCAAAGGAATGTGACTACCTTCTCAGGAATGGATGGGTTCCCTGCGTTGAATTCGACATCGGAGTATGGTTATTTTTATATTTATTTAATTTAATGGGATTGAATAATTAAATTAATTAGTGTTTTCGTGATTAATTAGAGTTTCTTTTTGTTTTTCTTTTAATTTTGGCAGAGCGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGTTACTGGACCATGTGGAAGCTCCCTATGTTTGGCTGCACCGACTCATCTCAGGTGATTCAGGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATTCATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTAAGTTCCATCTGCTGAGGCTTTCTTGAGGCGAATTTCCACCATTTGCCTTTTTTAAAGCTCCATCACTTGGGTGGTTTCAACCAAATTTCCCCCCTTTAATTTTTTTCTTCTCTCTTTTTTTTTCCTTCTTATTTTTCCATTTTACGTTTTGGTTTGTCTGTTGAATCCCACTATGTTTATTTCCCCGACTTTCCAATTCGAATTGGAATAAATGATGCTTTGATTTGTTCTTCAATTATCCTATCAATCAATCGGTCCTGTTTGCATCTTTCCTCATGGAAATTCAATCTATTTCCCTATGAAAATGTTCAATTGGGGTTTGTGTTTGTGTGATGGATATTGATTCGTGGTAACGATAAGGTTTAATCAATTTCATCCACTCAACCGTTGTCTTCATTATTCCCTTTTAAATTCGCATAATTCTCCAAAGAAAGAAAACAAAAACCAGTTGGGCCAAATGGGCCGCTTTCTCGAGTAATTATCTCCAACGACTACTTTTTCCATCGTGGATGGAGAAAGGGCCACGTGTATTCTTCTTAATGGGCTTTACTTAGAGAAATATCTGGCAGTGGCCCAGCTGAAAATTGACACGTAACCTTCATGAAAATTACTTCTCTCTTCGTCAAAAAGTGGGAACGCTTATTGTATATCTTTTGGTCGTAAACTTTTCATCTACTCATATCATATCTAATCCCACTCTCTCTTACCTTTTCATTAGTTGTTTCATTTCATGTTAACATCGACAACCTTTCAAATATCTCAACAATTTAATGATATAAATTTGTCC

mRNA sequence

ATGGCTTCATCCATTCTCTCATCCGCCGCTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCTTCCGCTGGTTTCCCCATCACTCGCAAGAACAACGTCGACATCACCACTTTGGCTAGCAATGGTGGAAAAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAGGAAGTTCGAGACTCTTTCTTACCTGCCTGATATGAGTAACGAACAATTGTCAAAGGAATGTGACTACCTTCTCAGGAATGGATGGGTTCCCTGCGTTGAATTCGACATCGGAAGCGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGTTACTGGACCATGTGGAAGCTCCCTATGTTTGGCTGCACCGACTCATCTCAGGTGATTCAGGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATTCATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCATCCATTCTCTCATCCGCCGCTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCTTCCGCTGGTTTCCCCATCACTCGCAAGAACAACGTCGACATCACCACTTTGGCTAGCAATGGTGGAAAAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAGGAAGTTCGAGACTCTTTCTTACCTGCCTGATATGAGTAACGAACAATTGTCAAAGGAATGTGACTACCTTCTCAGGAATGGATGGGTTCCCTGCGTTGAATTCGACATCGGAAGCGGATTCGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGTTACTGGACCATGTGGAAGCTCCCTATGTTTGGCTGCACCGACTCATCTCAGGTGATTCAGGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATTCATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTAA

Protein sequence

MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPPRFYSS*
Homology
BLAST of CsaV3_5G034360 vs. NCBI nr
Match: XP_004135094.1 (ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus] >KGN52085.1 hypothetical protein Csa_009195 [Cucumis sativus] >QFS21936.1 chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis x hytivus] >QFS21937.1 chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 1.6e-102
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. NCBI nr
Match: CCF55356.1 (ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus])

HSP 1 Score: 381.3 bits (978), Expect = 4.7e-102
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. NCBI nr
Match: P08474.1 (RecName: Full=Ribulose bisphosphate carboxylase small subunit, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Cucumis sativus] >AAA33131.1 ribulose bisphosphate carboxylase/oxygenase precursor peptide [Cucumis sativus])

HSP 1 Score: 365.9 bits (938), Expect = 2.0e-97
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASN GKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 180
           YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

BLAST of CsaV3_5G034360 vs. NCBI nr
Match: QFS21935.1 (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis x hytivus])

HSP 1 Score: 362.1 bits (928), Expect = 2.9e-96
Identity = 174/185 (94.05%), Postives = 180/185 (97.30%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLG++KFETLSYLPDMSNEQL+KE DYLLR GW+PCVEF   SGFVYRE+HRSPGY
Sbjct: 61  KVWPPLGVKKFETLSYLPDMSNEQLAKEVDYLLRKGWIPCVEFQCESGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. NCBI nr
Match: QFS21934.1 (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis hystrix])

HSP 1 Score: 357.1 bits (915), Expect = 9.4e-95
Identity = 170/185 (91.89%), Postives = 179/185 (96.76%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPP G++KFETLSYLPDM+ EQL KE +YL+RNGW+PC+EF I SGFVYRE+HRSPGY
Sbjct: 61  KVWPPRGVKKFETLSYLPDMNTEQLGKEVEYLIRNGWIPCLEFQIDSGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 2.7e-100
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASN GKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 180
           YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

BLAST of CsaV3_5G034360 vs. ExPASy Swiss-Prot
Match: P10798 (Ribulose bisphosphate carboxylase small subunit 3B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 298.1 bits (762), Expect = 6.8e-80
Identity = 137/182 (75.27%), Postives = 161/182 (88.46%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ASNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPP+G +KFETLSYLPD+S+ +L+KE DYLLRN W+PCVEF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV++E+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 183
            F
Sbjct: 181 SF 178

BLAST of CsaV3_5G034360 vs. ExPASy Swiss-Prot
Match: P24007 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifolia OX=3767 GN=RBCS PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 8.9e-80
Identity = 139/184 (75.54%), Postives = 165/184 (89.67%), Query Frame = 0

Query: 1   MASSILSSAAVASVNS--ASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQ 60
           MASS++SS  VA+V++   +PAQA MVAPF GLKSS+ FP+TRK+N DIT++ASNGG+VQ
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQ 60

Query: 61  CMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 120
           CM+VWPPLGL+KFETLSYLP +S+E L+KE DYLLR  WVPC+EF++ +GFVYRENHRSP
Sbjct: 61  CMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYK 180
           GYYDGRYWTMWKLPMFGCTDSSQV++E+EEAKK YP +FIR+IGFDNVRQVQCISFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYK 180

Query: 181 PPRF 183
           P  F
Sbjct: 181 PAGF 183

BLAST of CsaV3_5G034360 vs. ExPASy Swiss-Prot
Match: Q02980 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3751 GN=RBCS PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.4e-79
Identity = 139/184 (75.54%), Postives = 163/184 (88.59%), Query Frame = 0

Query: 1   MASSILSSAAVASVNS--ASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQ 60
           MASS++SS  VA+V++   +PAQA MVAPFTGLKSS+  P+TRK+N DIT++ASNGG+VQ
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQ 60

Query: 61  CMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSP 120
           CM+VWPPLGL+KFETLSYLP +S E L+KE DYLLR  WVPC+EF++  GFVYRENHRSP
Sbjct: 61  CMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYK 180
           GYYDGRYWTMWKLPMFGCTDSSQV++E+EEAKK YP +FIR+IGFDNVRQVQCISFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYK 180

Query: 181 PPRF 183
           P  F
Sbjct: 181 PAGF 183

BLAST of CsaV3_5G034360 vs. ExPASy Swiss-Prot
Match: P10796 (Ribulose bisphosphate carboxylase small subunit 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 9.8e-79
Identity = 135/182 (74.18%), Postives = 160/182 (87.91%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ SNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPP+G +KFETLSYLPD+++ +L+KE DYLLRN W+PCVEF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV++E+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 183
            F
Sbjct: 181 SF 178

BLAST of CsaV3_5G034360 vs. ExPASy TrEMBL
Match: A0A0A0KR46 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=rbcS PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 7.8e-103
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. ExPASy TrEMBL
Match: A0A5P8U3Q4 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 GN=rbcS PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 7.8e-103
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. ExPASy TrEMBL
Match: H8WR56 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=ruBisCO PE=2 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.3e-102
Identity = 184/185 (99.46%), Postives = 184/185 (99.46%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. ExPASy TrEMBL
Match: A0A5P8U3Q3 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 GN=rbcS PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.4e-96
Identity = 174/185 (94.05%), Postives = 180/185 (97.30%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPPLG++KFETLSYLPDMSNEQL+KE DYLLR GW+PCVEF   SGFVYRE+HRSPGY
Sbjct: 61  KVWPPLGVKKFETLSYLPDMSNEQLAKEVDYLLRKGWIPCVEFQCESGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. ExPASy TrEMBL
Match: A0A5P8U3Q8 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis hystrix OX=396994 GN=rbcS PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.6e-95
Identity = 170/185 (91.89%), Postives = 179/185 (96.76%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPP G++KFETLSYLPDM+ EQL KE +YL+RNGW+PC+EF I SGFVYRE+HRSPGY
Sbjct: 61  KVWPPRGVKKFETLSYLPDMNTEQLGKEVEYLIRNGWIPCLEFQIDSGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

Query: 181 RFYSS 186
           RFYSS
Sbjct: 181 RFYSS 185

BLAST of CsaV3_5G034360 vs. TAIR 10
Match: AT5G38410.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 298.1 bits (762), Expect = 4.8e-81
Identity = 137/182 (75.27%), Postives = 161/182 (88.46%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ASNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPP+G +KFETLSYLPD+S+ +L+KE DYLLRN W+PCVEF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV++E+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 183
            F
Sbjct: 181 SF 178

BLAST of CsaV3_5G034360 vs. TAIR 10
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 294.3 bits (752), Expect = 7.0e-80
Identity = 135/182 (74.18%), Postives = 160/182 (87.91%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ SNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPP+G +KFETLSYLPD+++ +L+KE DYLLRN W+PCVEF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV++E+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 183
            F
Sbjct: 181 SF 178

BLAST of CsaV3_5G034360 vs. TAIR 10
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 292.4 bits (747), Expect = 2.7e-79
Identity = 134/182 (73.63%), Postives = 158/182 (86.81%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+ SS AV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ SNGG+V CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           KVWPP+G +KFETLSYLPD+S+ +L+KE DYLLRN W+PCVEF++  GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV++E+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 183
            F
Sbjct: 181 SF 178

BLAST of CsaV3_5G034360 vs. TAIR 10
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 292.0 bits (746), Expect = 3.5e-79
Identity = 137/187 (73.26%), Postives = 161/187 (86.10%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ASNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDI-----GSGFVYRENH 120
           KVWPP+G +KFETLSYLPD+S+ +L+KE DYLLRN W+PCVEF++       GFVYRE+ 
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHG 120

Query: 121 RSPGYYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFI 180
            +PGYYDGRYWTMWKLP+FGCTDS+QV++E+EE KKEYP AFIR+IGFDN RQVQCISFI
Sbjct: 121 NTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 180

Query: 181 AYKPPRF 183
           AYKPP F
Sbjct: 181 AYKPPSF 183

BLAST of CsaV3_5G034360 vs. TAIR 10
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A )

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-78
Identity = 132/182 (72.53%), Postives = 158/182 (86.81%), Query Frame = 0

Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSA +     ASPAQA+MVAPF GLKSSA FP TRK N DIT++ SNGG+V CM
Sbjct: 1   MASSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120
           +VWPP+G +KFETLSYLPD+++ +L+KE DYL+RN W+PCVEF++  GFVYRE+  SPGY
Sbjct: 61  QVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180
           YDGRYWTMWKLP+FGCTDS+QV++E+EE KKEYP+AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 RF 183
            F
Sbjct: 181 SF 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004135094.11.6e-102100.00ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus] >... [more]
CCF55356.14.7e-10299.46ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus][more]
P08474.12.0e-9798.88RecName: Full=Ribulose bisphosphate carboxylase small subunit, chloroplastic; Sh... [more]
QFS21935.12.9e-9694.05chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucum... [more]
QFS21934.19.4e-9591.89chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucum... [more]
Match NameE-valueIdentityDescription
P084742.7e-10098.88Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu... [more]
P107986.8e-8075.27Ribulose bisphosphate carboxylase small subunit 3B, chloroplastic OS=Arabidopsis... [more]
P240078.9e-8075.54Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifoli... [more]
Q029804.4e-7975.54Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3... [more]
P107969.8e-7974.18Ribulose bisphosphate carboxylase small subunit 1B, chloroplastic OS=Arabidopsis... [more]
Match NameE-valueIdentityDescription
A0A0A0KR467.8e-103100.00Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=rb... [more]
A0A5P8U3Q47.8e-103100.00Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 G... [more]
H8WR562.3e-10299.46Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=ru... [more]
A0A5P8U3Q31.4e-9694.05Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 G... [more]
A0A5P8U3Q84.6e-9591.89Ribulose bisphosphate carboxylase small subunit OS=Cucumis hystrix OX=396994 GN=... [more]
Match NameE-valueIdentityDescription
AT5G38410.14.8e-8175.27Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38430.17.0e-8074.18Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38420.12.7e-7973.63Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38410.33.5e-7973.26Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT1G67090.11.7e-7872.53ribulose bisphosphate carboxylase small chain 1A [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024681Ribulose bisphosphate carboxylase, small subunitPRINTSPR00152RUBISCOSMALLcoord: 21..38
score: 76.11
coord: 97..112
score: 58.06
coord: 119..148
score: 82.54
coord: 48..66
score: 68.59
coord: 153..179
score: 85.34
coord: 69..95
score: 66.27
IPR000894Ribulose bisphosphate carboxylase small subunit, domainSMARTSM00961RuBisCO_small_2_acoord: 70..179
e-value: 8.4E-37
score: 138.3
IPR000894Ribulose bisphosphate carboxylase small subunit, domainPFAMPF00101RuBisCO_smallcoord: 71..179
e-value: 1.1E-38
score: 131.1
IPR000894Ribulose bisphosphate carboxylase small subunit, domainCDDcd03527RuBisCO_smallcoord: 69..179
e-value: 1.15779E-59
score: 179.375
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyGENE3D3.30.190.10Ribulose bisphosphate carboxylase, small subunitcoord: 60..184
e-value: 7.3E-60
score: 202.4
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilySUPERFAMILY55239RuBisCO, small subunitcoord: 60..180
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 2..46
e-value: 4.8E-23
score: 81.1
NoneNo IPR availablePANTHERPTHR31262RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTICcoord: 1..183
NoneNo IPR availablePANTHERPTHR31262:SF18RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAINcoord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G034360.1CsaV3_5G034360.1mRNA