CsaV3_5G034120 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G034120
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 27195679 .. 27196420 (+)
RNA-Seq ExpressionCsaV3_5G034120
SyntenyCsaV3_5G034120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGGCATGTTCACCAACAGTTCTTATAGCGTGTTGGCCATGGTGGCTGCTCAATAGATGCGACAATGGTATTAATTATGTTTGAGGTAAGACTTTCTTTTTTTTAGTTCTCTAAACTTTTATAGCGTCTAAAGATGCAATAAGAGTTTAAAAGTAACGATGAGTTGAAGTCAGACAAGCAACATGACATGTTTCTCTTGTGCTTGAACTTTAAGCACACATTAATGATGGAGCTTTCCAATGGGGGGTGGCAGTAGGCCATTACAACTCACCAATCCGAGAATACACACCACTGCACGGTAAGTCAGACTTTGCTTTTCGGACAAAGCGCATTCAAAGTGAGCAATTTCAAAAAGTCATAAGTGGGACTGGAAAAGCATTGCATTCTAGAACTGTAGGCTTCACTTTATTATGTACATCTTTTCACACCATCTTTTTTATCTTAGCATTATTAATTAGTGTATGTATATTTTTTTCTGCTATCGTAATTTGAATACAGCATATACTAAAACATGAGAATCCCACCTTTTATACATTCCTACAAAAATAAAGGAGAAAAAGTAGAGAAGTCCTTGCTCTAGCTAATTGTGCTTGAATCAATGTAATGTCAAAACATGTGGCACTCAGCCAATTGCCCACTTGGCAGGAAAAGAAAGGGTAATATCCCCCCAGTCCCTCAACTTGATAGAATACCTGTCCACGTCATACCACGAGACATCTTTTCATCATCTATATAA

mRNA sequence

ATGGCTGGGGCATGTTCACCAACAGTTCTTATAGCGTGTTGGCCATGGTGGCTGCTCAATAGATGCGACAATGCACACATTAATGATGGAGCTTTCCAATGGGGGGTGGCAGTAGGCCATTACAACTCACCAATCCGAGAATACACACCACTGCACGCCAATTGCCCACTTGGCAGGAAAAGAAAGGGTAATATCCCCCCAGTCCCTCAACTTGATAGAATACCTGTCCACGTCATACCACGAGACATCTTTTCATCATCTATATAA

Coding sequence (CDS)

ATGGCTGGGGCATGTTCACCAACAGTTCTTATAGCGTGTTGGCCATGGTGGCTGCTCAATAGATGCGACAATGCACACATTAATGATGGAGCTTTCCAATGGGGGGTGGCAGTAGGCCATTACAACTCACCAATCCGAGAATACACACCACTGCACGCCAATTGCCCACTTGGCAGGAAAAGAAAGGGTAATATCCCCCCAGTCCCTCAACTTGATAGAATACCTGTCCACGTCATACCACGAGACATCTTTTCATCATCTATATAA

Protein sequence

MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRKRKGNIPPVPQLDRIPVHVIPRDIFSSSI*
Homology
[Close]
BLAST of CsaV3_5G034120 vs. NCBI nr
Match: KGN52061.1 (hypothetical protein Csa_009175 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 3.2e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60
          MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK
Sbjct: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60

Query: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 89
          RKGNIPPVPQLDRIPVHVIPRDIFSSSI
Sbjct: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 88

[Close]
BLAST of CsaV3_5G034120 vs. ExPASy TrEMBL
Match: A0A0A0KWE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608490 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-48
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60
          MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK
Sbjct: 1  MAGACSPTVLIACWPWWLLNRCDNAHINDGAFQWGVAVGHYNSPIREYTPLHANCPLGRK 60

Query: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 89
          RKGNIPPVPQLDRIPVHVIPRDIFSSSI
Sbjct: 61 RKGNIPPVPQLDRIPVHVIPRDIFSSSI 88

The following BLAST results are available for this feature:
BLAST of CsaV3_5G034120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52061.13.2e-48100.00hypothetical protein Csa_009175 [Cucumis sativus][more]
BLAST of CsaV3_5G034120 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G034120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWE11.5e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608490 PE=4 SV=1[more]
BLAST of CsaV3_5G034120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G034120.1CsaV3_5G034120.1mRNA