CsaV3_5G033560 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G033560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 26831325 .. 26831745 (-)
RNA-Seq Expression	CsaV3_5G033560
Synteny	CsaV3_5G033560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGACGTCCATGGATTCCTCTTCGAATTAACAAGCTTGAGTCGAGTTCTTCCTTTTTTTGTCTCTCCAAAAGCTGTCTGTCAGCATTGCCGAATCCCCTAATTGGTTGCAGTATATCCAAGCTTTCGTATAGATCAGACAACCATGAAGGTAGATACTTTATAGCCCCCCTCCAAAATGCAGCATTTTCTTTATTATCACAAGTCTTTCAAGGTTTCATAAGTGAACAGCAGATGAACTTCCAAGTTCCAAGATGTATACACAGTACCAACATCTGAAGTATATGTACAAGTATCAGGACAACACTGACCTTGACCGGTTTAACGCCAGGTCACACTTGTCTCCTTCAAGAAGCAAATTTTACTTGCCTCCAGAGACAGATTTCAGTGAATCACAGATTACTACCATTTCATAG

mRNA sequence

GGAAGAGGACGTCCATGGATTCCTCTTCGAATTAACAAGCTTGAGTCGAGTTCTTCCTTTTTTTGTCTCTCCAAAAGCTGTCTGTCAGCATTGCCGAATCCCCTAATTGGTTGCAGTATATCCAAGCTTTCGTATAGATCAGACAACCATGAAGATGAACTTCCAAGTTCCAAGATGTATACACAGTACCAACATCTGAAGTATATGTACAAGTATCAGGACAACACTGACCTTGACCGGTTTAACGCCAGGTCACACTTGTCTCCTTCAAGAAGCAAATTTTACTTGCCTCCAGAGACAGATTTCAGTGAATCACAGATTACTACCATTTCATA

Coding sequence (CDS)

GGAAGAGGACGTCCATGGATTCCTCTTCGAATTAACAAGCTTGAGTCGAGTTCTTCCTTTTTTTGTCTCTCCAAAAGCTGTCTGTCAGCATTGCCGAATCCCCTAATTGGTTGCAGTATATCCAAGCTTTCGTATAGATCAGACAACCATGAAGATGAACTTCCAAGTTCCAAGATGTATACACAGTACCAACATCTGAAGTATATGTACAAGTATCAGGACAACACTGACCTTGACCGGTTTAACGCCAGGTCACACTTGTCTCCTTCAAGAAGCAAATTTTACTTGCCTCCAGAGACAGATTTCAGTGAATCACAGATTACTACCATTTCATA

Protein sequence

GRGRPWIPLRINKLESSSSFFCLSKSCLSALPNPLIGCSISKLSYRSDNHEDELPSSKMYTQYQHLKYMYKYQDNTDLDRFNARSHLSPSRSKFYLPPETDFSESQITTISX

Homology

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BLAST of CsaV3_5G033560 vs. NCBI nr
Match: KAE8648776.1 (hypothetical protein Csa_023651, partial [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   GRGRPWIPLRINKLESSSSFFCLSKSCLSALPNPLIGCSISKLSYRSDNHEDELPSSKMY 60
           GRGRPWIPLRINKLESSSSFFCLSKSCLSALPNPLIGCSISKLSYRSDNHEDELPSSKMY
Sbjct: 1   GRGRPWIPLRINKLESSSSFFCLSKSCLSALPNPLIGCSISKLSYRSDNHEDELPSSKMY 60

Query: 61  TQYQHLKYMYKYQDNTDLDRFNARSHLSPSRSKFYLPPETDFSESQITTIS 112
           TQYQHLKYMYKYQDNTDLDRFNARSHLSPSRSKFYLPPETDFSESQITTIS
Sbjct: 61  TQYQHLKYMYKYQDNTDLDRFNARSHLSPSRSKFYLPPETDFSESQITTIS 111

The following BLAST results are available for this feature:

BLAST of CsaV3_5G033560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648776.1	1.4e-56	100.00	hypothetical protein Csa_023651, partial [Cucumis sativus]	[more]

BLAST of CsaV3_5G033560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G033560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G033560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G033560.1	CsaV3_5G033560.1	mRNA