CsaV3_5G032980 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G032980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L32, chloroplastic
Location	chr5: 26519074 .. 26521376 (+)
RNA-Seq Expression	CsaV3_5G032980
Synteny	CsaV3_5G032980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACCCTTGCCAGTTACCAGCCCATTGGGCTAGCTCAAGGCGAAACGACGCCGTTGAATAGGTGCTTGGTTGGTGCATTTGCTAATTCCTAAACCCCGTCGTCTTCTCAGTCTGATTTCCACCGCCGGTATACTGAAATCAGCATTGGCACTTGGATTTGCTAGCAGCTATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGCTTAAAGCGATGGCTTACGGTTTACCCCATTCTTCGCCGATATCTGGGGTCATGGGCCCTAAGGATTCCCCGCCCCCGCTTGTTCTTCCTGAGTTCAACCAGGAATATGATGATGATAAAACCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTCTATGGAGCTTATGGCTGTTCCTAAGAAGAAGGTATTGAATTTCTTCCTCCTATTTTCAAATAATCAAACGCCTACTTTTAGAATAGAAATTTAACCTGTTTATTTCTTATGGATAAAGTAGAAACTTCAAATTTCACATTGCTTGAAGTTGTGGGATATGGAAGATGTTGCTGGAAGTATTAGAAATGAGCTTAAAGAATTCAAAGATTTTAGAGAGCATTTGTAGTTGCATTTTTTATGTTCACTTCTTCTGGAAATTCCAGATGGTGCTATGATTCTATGAGATCACTATTTAGCCAAAACCATTTGGTTTTTGAAAATTAAGCCTATTTTTTCTCAATTTCTTAGGTAGAAAAGTTGAATTCTTAGCGGAAGAAAAAACTAGTTCTTATAATCTATGTTTTCAAAACTTGGACTTGGTTTTTTATAACATTAGTAAAAAATAGATAATAAAACAAAAAATGTGGAGGTGGAAGAGATGTTTATTGATTAATTGATGCTAAATGGGACCTTATATATTCATCTTTACTTAACAATGCCTATTAAGTTCAAATTCTCGTATGTATTGACAATGTCAATATTTGAGTATGGCATTGTTTATACTTACTTACACACACACACACACATGTTTGAAGCGTTCCTTTAGGTTTCCAAAGCTCCTTTTCTAAAACTTGTTCGTTTGGGTTTATTGAGAAATATGAGAAAACAATTCATAGTCTATATTCTGCAGGTTTCTCCACATAAAAGGCGCATAAGAAATGCTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGATGCAAGTAAGATTCTCCCTGGTCTGCCCTAACAAATTATTGTTTAATGTTTATCTTAGCTTCTAGGAAAGTTAATCCAGATATGATTTCACTGACTATGATAATGTGACCTATTTTATTATTTTATCATCAATCGGAAGCTGTTTCTTCACAACGATAGGACTGTAATTCTGTGCTTCGTATTGGAAACTGGAAAGCATTCCAGTTGTCAGTAGCTAATCTTGACAAATACAAGCAACACAACACCCTCAAATGAATGTCGCCATAACTATAACAGAACATTAGGCCCTCTATTTAACCAAAGGTTCAAAACAATGGGTCATCTCTAGTTACTAGTTAGTAATTGAGGCGAAGTTTTTAGATTTCAGAGAAAGATGATATTCACACACAAGTCTTTTAATAAAGAAAAAAATAGAATCGGTTGGTGTCAACTGTCAAGAGTGACAGTGACAAAGATGCCAATTGACTCTAGCTAATATTTCAATTTCTTTCACTTCATTGCAACCCTTGATAGTATTTGCCTAATCACTGGATAAGAAACTAGCATCATAAAATGTTAACAATAAGAAAAATTTCTGATACCATAAATTGCTTAGAGTAATCTTTAACATTTCAGCCTCAGCCCATAAGTTTTGTGATAATGTAAAATGCCTAAAGTCTGCATGAATTTTCTTGGTGCTGACTCTGTTACTGCAGGGCTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGACCGGGGGATCAGGACAATTCAGCCACATGAGACTATGGAGAGTAAAAAGTGCAGGCTGAAAGCAATGTCTTCAGTTATAGAATCGTCCCCATACCTGGGAGCTATAGTTTCCTTTTGAGAATTCTTCTTTATTAGATTCTTGAAGTTTTGGTTCTTCTGCTCATTGTATGACAGATTGTTCGATTTCAACATGTTATAACCATTAACTTGCTGTTGAGCCATATCCTTGCTTTGTGCTATCCGGTAAACTTCAATTCTTCCAGGTCTGAAATGAAATGCGGACTCTTTTAGCATATGTTTTTCTTTCTTAAATGCCTTTTAAAAGAAAGATCTATATTTTGTAAATAATTTTTTTTTTTT

mRNA sequence

ATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGCTTAAAGCGATGGCTTACGGTTTACCCCATTCTTCGCCGATATCTGGGGTCATGGGCCCTAAGGATTCCCCGCCCCCGCTTGTTCTTCCTGAGTTCAACCAGGAATATGATGATGATAAAACCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTCTATGGAGCTTATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGCGCATAAGAAATGCTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGATGCAAGGCTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGACCGGGGGATCAGGACAATTCAGCCACATGA

Coding sequence (CDS)

ATGGCGTTGAGGATTATGAGGGCGCTCGAGGGTCAGATGGGTTCAATGCTAGGGCTTAAAGCGATGGCTTACGGTTTACCCCATTCTTCGCCGATATCTGGGGTCATGGGCCCTAAGGATTCCCCGCCCCCGCTTGTTCTTCCTGAGTTCAACCAGGAATATGATGATGATAAAACCAACAACTGCAGTATTGTGGGATTTGGTTTCCCTAGCTTATCTTTTTCCGGGTCTATGGAGCTTATGGCTGTTCCTAAGAAGAAGGTTTCTCCACATAAAAGGCGCATAAGAAATGCTCCAAAGGCTCTAAAACCTATTCCAGTTATAGTTCGATGCAAGGCTTGTGGTAAAGTGAAGCTGCCTCACTACTATTGTTGCAGTGGAAGACCGGGGGATCAGGACAATTCAGCCACATGA

Protein sequence

MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLPHYYCCSGRPGDQDNSAT*

Homology

[Close]

BLAST of CsaV3_5G032980 vs. NCBI nr
Match: XP_004135164.1 (uncharacterized protein LOC101216290 [Cucumis sativus] >KGN51945.1 hypothetical protein Csa_008182 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 9.8e-73
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN
Sbjct: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSAT 138
           HYYCCSGRPGDQDNSAT
Sbjct: 121 HYYCCSGRPGDQDNSAT 137

[Close]

BLAST of CsaV3_5G032980 vs. NCBI nr
Match: XP_008446396.1 (PREDICTED: uncharacterized protein LOC103489153 [Cucumis melo] >KAA0034441.1 Ribosomal protein L32p [Cucumis melo var. makuwa] >TYK17693.1 Ribosomal protein L32p [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-64
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRIMRALEGQ GSMLGLKAMAYGLPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ N
Sbjct: 1   MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVI+RCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLYFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSAT 138
           HYYCCSGRPG+QDNSAT
Sbjct: 121 HYYCCSGRPGEQDNSAT 135

[Close]

BLAST of CsaV3_5G032980 vs. NCBI nr
Match: XP_022968104.1 (uncharacterized protein LOC111467436 [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 113/136 (83.09%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRI+RA+EGQ GSM GLKAMA  LPHSSPISG+M  KDS PPLVLPEFN E D D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PKALKPIPVI+RCK+CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSA 137
           H+YCCSGR G+QDNSA
Sbjct: 121 HFYCCSGRTGEQDNSA 136

[Close]

BLAST of CsaV3_5G032980 vs. NCBI nr
Match: XP_023541204.1 (uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.3 bits (586), Expect = 9.9e-57
Identity = 111/136 (81.62%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRI+RA+EGQ GSM GLKAM   LPHSSPISG+M  KDS PPLVLPEFN E D D+ N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMTKVLPHSSPISGIMDRKDSAPPLVLPEFNHESDRDRIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPK+K SPHKR IRN PKALKPIPVI+RCK+CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSA 137
           H+YCCSGR G+QDNSA
Sbjct: 121 HFYCCSGRTGEQDNSA 136

[Close]

BLAST of CsaV3_5G032980 vs. NCBI nr
Match: XP_038891873.1 (uncharacterized protein LOC120081238 [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-56
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRI+RALE Q GSMLGLK MA  LPHSSPISG++  KDS PPLVLPEFNQE D D+ N
Sbjct: 1   MALRIVRALEAQTGSMLGLKGMANALPHSSPISGILDRKDSTPPLVLPEFNQESDKDRIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSI+G GFP+LSFSGSMELMAVPKKKVSP+KR IRN PKALKPIPVIVRCK+CGKVKLP
Sbjct: 61  NCSIMGSGFPTLSFSGSMELMAVPKKKVSPYKRGIRNGPKALKPIPVIVRCKSCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSA 137
           HYYCCSGR G+QDNSA
Sbjct: 121 HYYCCSGRTGEQDNSA 136

[Close]

BLAST of CsaV3_5G032980 vs. ExPASy Swiss-Prot
Match: Q2N923 (50S ribosomal protein L32 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225 GN=rpmF PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-04
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 81  MAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLPHYYC 125
           MAVPK+KVSPH+R  R A  +LK +     C  CG++K PH  C
Sbjct: 1   MAVPKRKVSPHRRGNRRAHDSLK-VEAFHECNNCGELKRPHNMC 43

[Close]

BLAST of CsaV3_5G032980 vs. ExPASy TrEMBL
Match: A0A0A0KQP7 (50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606360 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.8e-73
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN
Sbjct: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSAT 138
           HYYCCSGRPGDQDNSAT
Sbjct: 121 HYYCCSGRPGDQDNSAT 137

[Close]

BLAST of CsaV3_5G032980 vs. ExPASy TrEMBL
Match: A0A5A7SYB6 (50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00190 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRIMRALEGQ GSMLGLKAMAYGLPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ N
Sbjct: 1   MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVI+RCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLYFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSAT 138
           HYYCCSGRPG+QDNSAT
Sbjct: 121 HYYCCSGRPGEQDNSAT 135

[Close]

BLAST of CsaV3_5G032980 vs. ExPASy TrEMBL
Match: A0A1S3BEG9 (50S ribosomal protein L32, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489153 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRIMRALEGQ GSMLGLKAMAYGLPHSS   GVMGPKDSPPPLVLPEFNQE D+D+ N
Sbjct: 1   MALRIMRALEGQTGSMLGLKAMAYGLPHSS--HGVMGPKDSPPPLVLPEFNQESDEDRIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSL FSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVI+RCK CGKVKLP
Sbjct: 61  NCSIVGFGFPSLYFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIIRCKGCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSAT 138
           HYYCCSGRPG+QDNSAT
Sbjct: 121 HYYCCSGRPGEQDNSAT 135

[Close]

BLAST of CsaV3_5G032980 vs. ExPASy TrEMBL
Match: A0A6J1HYN6 (50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467436 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.6e-57
Identity = 113/136 (83.09%), Postives = 121/136 (88.97%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRI+RA+EGQ GSM GLKAMA  LPHSSPISG+M  KDS PPLVLPEFN E D D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMAKVLPHSSPISGIMDHKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPK+KVSPHKR IRN PKALKPIPVI+RCK+CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKVSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSA 137
           H+YCCSGR G+QDNSA
Sbjct: 121 HFYCCSGRTGEQDNSA 136

[Close]

BLAST of CsaV3_5G032980 vs. ExPASy TrEMBL
Match: A0A6J1G1I2 (50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449817 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.3e-56
Identity = 110/136 (80.88%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 1   MALRIMRALEGQMGSMLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYDDDKTN 60
           MALRI+RA+EGQ GSM GLKAMA  LPHSSPI+G++  KDS PPLVLPEFN E D D  N
Sbjct: 1   MALRILRAVEGQTGSMFGLKAMANVLPHSSPITGIIYRKDSAPPLVLPEFNHESDRDGIN 60

Query: 61  NCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLP 120
           NCSIVGFGFPSLSFSGSMELMAVPK+K SPHKR IRN PKALKPIPVI+RCK+CGKVKLP
Sbjct: 61  NCSIVGFGFPSLSFSGSMELMAVPKRKTSPHKRGIRNGPKALKPIPVIIRCKSCGKVKLP 120

Query: 121 HYYCCSGRPGDQDNSA 137
           H+YCCSGR G+QDNSA
Sbjct: 121 HFYCCSGRTGEQDNSA 136

[Close]

BLAST of CsaV3_5G032980 vs. TAIR 10
Match: AT1G26740.1 (Ribosomal L32p protein family )

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 1   MALRIMRALEGQMGS--MLGLKAMAYGLPHSSPISGVMGPKDSPPPLVLPEFNQEYD--- 60
           MALR+       + S  +L  +++++     SP++G      S PPLVLPEF+Q      
Sbjct: 1   MALRLTSLKRAAVESCRILETRSLSHVAAMPSPLNGAFDRPISMPPLVLPEFDQNQPGLI 60

Query: 61  DDKTNNCSIVGFGFPSLSFSGSMELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACG 120
           ++K+      GFG PS +F+GSMELMAVPKKK+S HKR IRN PKALKP+PVI+RC++CG
Sbjct: 61  EEKS-----FGFGLPSFAFNGSMELMAVPKKKISKHKRGIRNGPKALKPVPVIIRCRSCG 120

Query: 121 KVKLPHYYCCSG 128
           +VKLPH++CCSG
Sbjct: 121 RVKLPHFFCCSG 127

[Close]

BLAST of CsaV3_5G032980 vs. TAIR 10
Match: AT1G69485.1 (Ribosomal L32p protein family )

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-20
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 78  MELMAVPKKKVSPHKRRIRNAPKALKPIPVIVRCKACGKVKLPHYYCCSGR---PGDQDN 136
           MELMAVPKKK+S HKR IRN PKA KP PVI+RC++CG+VKLPH+YCCSG    P +Q N
Sbjct: 1   MELMAVPKKKISKHKRGIRNGPKAFKPTPVIIRCRSCGRVKLPHFYCCSGERAIPDEQSN 60

The following BLAST results are available for this feature:

BLAST of CsaV3_5G032980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135164.1	9.8e-73	100.00	uncharacterized protein LOC101216290 [Cucumis sativus] >KGN51945.1 hypothetical ...	[more]
XP_008446396.1	2.2e-64	91.24	PREDICTED: uncharacterized protein LOC103489153 [Cucumis melo] >KAA0034441.1 Rib...	[more]
XP_022968104.1	3.4e-57	83.09	uncharacterized protein LOC111467436 [Cucurbita maxima]	[more]
XP_023541204.1	9.9e-57	81.62	uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]	[more]
XP_038891873.1	1.7e-56	82.35	uncharacterized protein LOC120081238 [Benincasa hispida]	[more]

BLAST of CsaV3_5G032980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2N923	7.7e-04	50.00	50S ribosomal protein L32 OS=Erythrobacter litoralis (strain HTCC2594) OX=314225...	[more]

BLAST of CsaV3_5G032980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQP7	4.8e-73	100.00	50S ribosomal protein L32, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G606...	[more]
A0A5A7SYB6	1.1e-64	91.24	50S ribosomal protein L32, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BEG9	1.1e-64	91.24	50S ribosomal protein L32, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489153...	[more]
A0A6J1HYN6	1.6e-57	83.09	50S ribosomal protein L32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1G1I2	5.3e-56	80.88	50S ribosomal protein L32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CsaV3_5G032980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26740.1	1.1e-29	50.76	Ribosomal L32p protein family	[more]
AT1G69485.1	2.1e-20	70.49	Ribosomal L32p protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002677	Ribosomal protein L32p	TIGRFAM	TIGR01031	TIGR01031	coord: 82..124 e-value: 2.4E-9 score: 35.3
IPR002677	Ribosomal protein L32p	PFAM	PF01783	Ribosomal_L32p	coord: 82..126 e-value: 9.4E-12 score: 45.0
IPR002677	Ribosomal protein L32p	HAMAP	MF_00340	Ribosomal_L32	coord: 81..131 score: 11.470804
None	No IPR available	PANTHER	PTHR21026:SF5	BNACNNG33200D PROTEIN	coord: 29..128
None	No IPR available	PANTHER	PTHR21026	39S RIBOSOMAL PROTEIN L32, MITOCHONDRIAL	coord: 29..128
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 80..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G032980.1	CsaV3_5G032980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome