CsaV3_5G032800 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G032800
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 26441070 .. 26441487 (-)
RNA-Seq Expression	CsaV3_5G032800
Synteny	CsaV3_5G032800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGTATACAATCCTCAAACTTTGTTTAGTGAAATTACTTCCTTTAAAATTCTTACCTCATCTTAATAAGTCTCCCTATTCCTTATCCACAGGGGCAACAGTCATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTACAAACCAGGTATATATAAATATATATGTACACTCAATTTATAGAAATGATTTAGGCCTGATCGATTTCTTCAATGGCAGAAGAATCAGCCACTGGAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGACATACTCCAAAGCCAACCGGGAAAGTCTGA

mRNA sequence

ATGGCAGACCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGGGCAACAGTCATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTACAAACCAGAAGAATCAGCCACTGGAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGACATACTCCAAAGCCAACCGGGAAAGTCTGA

Coding sequence (CDS)

ATGGCAGACCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGGGCAACAGTCATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTACAAACCAGAAGAATCAGCCACTGGAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGACATACTCCAAAGCCAACCGGGAAAGTCTGA

Protein sequence

MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFNDYQIFGANPRHTPKPTGKV*

Homology

[Close]

BLAST of CsaV3_5G032800 vs. NCBI nr
Match: KGN51928.1 (hypothetical protein Csa_009059 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.3e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
          MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of CsaV3_5G032800 vs. NCBI nr
Match: KAA0034426.1 (putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipoprotein yfhM [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
          MADQTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQA NQKNQP ENLWNGR
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of CsaV3_5G032800 vs. NCBI nr
Match: XP_008446367.1 (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
           MADQTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQA NQKNQP ENLWNGR
Sbjct: 28  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 87

Query: 61  MDLQFNDYQIFGANPRHTPKPTGKV 86
           MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 88  MDLQFNDYQIFGANPRHTPKPTGKV 112

[Close]

BLAST of CsaV3_5G032800 vs. NCBI nr
Match: KAG7032221.1 (hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 5.6e-18
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
          MA QTQH +M   L+SLL+      SAS A +MIHLGQDF ASQA +Q  QPL+ L N R
Sbjct: 1  MAGQTQHFLMVLILLSLLL------SASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQ+NDY +  AN RHTPKPTG+V
Sbjct: 61 MDLQYNDYPVSEANHRHTPKPTGRV 79

[Close]

BLAST of CsaV3_5G032800 vs. NCBI nr
Match: KAG6601439.1 (hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 17 LLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFNDYQIFGANPR 76
          +LI+    +SAS A +MIHLGQDF ASQA +QK QPL+ L N RMDLQ+NDY +  AN R
Sbjct: 2  VLILLSLLLSASGAAIMIHLGQDFSASQAAHQKKQPLQKLLNDRMDLQYNDYPVSEANHR 61

Query: 77 HTPKPTGKV 86
          HTPKPTG+V
Sbjct: 62 HTPKPTGRV 70

[Close]

BLAST of CsaV3_5G032800 vs. ExPASy TrEMBL
Match: A0A0A0KQN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
          MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of CsaV3_5G032800 vs. ExPASy TrEMBL
Match: A0A5A7SX31 (Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00360 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
          MADQTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQA NQKNQP ENLWNGR
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of CsaV3_5G032800 vs. ExPASy TrEMBL
Match: A0A1S3BEE6 (uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
           MADQTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQA NQKNQP ENLWNGR
Sbjct: 28  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 87

Query: 61  MDLQFNDYQIFGANPRHTPKPTGKV 86
           MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 88  MDLQFNDYQIFGANPRHTPKPTGKV 112

[Close]

BLAST of CsaV3_5G032800 vs. ExPASy TrEMBL
Match: B9S8Y1 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836660 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 8  LVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFND 67
          LV+   + S L+   N  S SRA  + H GQ  P+S   N   Q +  L NGR D++ ND
Sbjct: 10 LVIILLVFSQLLFSLNAASTSRANELFHGGQHVPSSSFENTYLQRMRKLGNGRKDIEVND 69

Query: 68 YQIFGANPRHTPKP 82
          Y   G N  HTP+P
Sbjct: 70 YSESGPNKSHTPEP 83

The following BLAST results are available for this feature:

BLAST of CsaV3_5G032800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51928.1	2.3e-40	100.00	hypothetical protein Csa_009059 [Cucumis sativus]	[more]
KAA0034426.1	3.2e-37	92.94	putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipopr...	[more]
XP_008446367.1	3.2e-37	92.94	PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo]	[more]
KAG7032221.1	5.6e-18	61.18	hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601439.1	3.4e-15	63.77	hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_5G032800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G032800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQN6	1.1e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1	[more]
A0A5A7SX31	1.5e-37	92.94	Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BEE6	1.5e-37	92.94	uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=...	[more]
B9S8Y1	1.0e-04	40.54	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0836660 PE=4 SV=1	[more]

BLAST of CsaV3_5G032800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G032800.1	CsaV3_5G032800.1	mRNA