CsaV3_5G032690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G032690
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 26413227 .. 26415043 (+)
RNA-Seq ExpressionCsaV3_5G032690
SyntenyCsaV3_5G032690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACCCCTCCATCTCTCTTGTCTCTCACTATTCATTCTGCCATCCTTAATCTCTCTTCTATCTCTGATCTCTCTTTTCTCCCTGATCACATCGTTCTCCATCTATTCCTGGTACCTCTCTTTTTTATATCATCATCATCTTCTTCTTCTTCTTCCTTTTTCTTTTCAATTCATTTCCCAATTACTCGTTTTTTTATTGTTTATTTTATTACATTTGGTCAACGCTATCTACAATCTTATGGTTTCGTCAAGATTTATGACGAAAAAAACTGATTGGGTGGTGGGTCAAGTTTTGTTTTGTAGAAATGCCAATGGAAGTTTGGATGAATTCTGTTGATTTCTACACTACTTCACTTCCGTTATTGTTCATATTGAAAATCAGTTATTTGTTTCTTTCTCATCAGTTAATAATGTTAACAAACATTTATTCGGGAAGATGAAGTTGTAACTTGTATGTGCGTTATATAAGCTTCAAAATCAATTGTTATGTGTTTTTACAATTAATTAATGAATTTAGAATCGTCTTTATGTGATTTTTATGCTTGCTAGACTTTGATTGTTTATCGTGCCCTGTTCTTTGTTTTACACTTTCAAGCCAGAAGAAGGTTATGTTGGTGTTGCTGTGACATTGGCGATGGGTAATTTTGGTGTTGTGTAGTTGTTAAATTGTATTATATTTTGCTTAATCTTTTATATGGACTTGTCTTTACACTACGATATTACTTATTACTTATTGCTTTGGAATTTGGAATTTGGAATTTGATATTCGTTTCCCCCAAAATGGAATCCTCAGTGGCTAAACAATTGGACTGAAGAGAAAGCTCTGAAAATAGAGGGGATGGGTAAGTGGAAGTTAAACTTAGGTTCAGGCTAGTGAGGTTGGAAAAATTCTTTCCAACTAGCAAAAAAACCAATTAGATGGGGGGCTGCAGAGTCGTTTGGTATATAGGGTTGTTAAGCATCCAAATTACCTAGTCTATTTCTATACCTCCTCAACGATACTCCTGTATCCAGAAAATACTGTTCTGTTCCTAGAAATTTTCATTTCTCGAAAAGTTGGAACAAATTATTGTAACCCCTTTGTCTTGGTTTTCTTTTTGGGTGGAAGTAAAATCTTTGAAGGTTCTCATCTTTCAAAAGGTAGAACCAGGAACCATTTCCAACTATAGAAGAAGGGATCTGTATGTTGTAACTATTGCATGTGGAAATGAAGGCCAAGGGATTGAGATGGATGTGACCCCATTGGTTTCTGTGGTTAAACATTTGTGTATAATGTTAAAATTAGGAAATGGTTGGAATTCCATTTTTACAAATTGTTTACATTATCATTAAATAGAAATATAAATTTTAGACAAATTACTCGAACCTATACTGGAAATATCTGTTAGCTAGCAATTTTTCACATTTTGAGTGTATCAATAGTTGCTTAATGTTATTTTGTAACAGTACAGGAAGCTGAAATTGTTGCTTCACCGCTAAATATCTTATTTTACTACATTTTATATTGGGCCTTCTTTACTGGCTGGTATTCTCGAGTTACTGAGTAGATGAAATACTTTTATGAAGCAGGAAACTTTAAAGGCTGGAAAATTAAACGAGAGGGTTTTAAAGTTGTTTGTGGCAAGTGGAAAAGATGAAGTTCTTTCGCTCATTGGGGAATTTAAAATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGTAAGAAAAATCTTGATATACCAATATTCTGCTACTCCATTGATTTTGTGGTTGGTTTATCCATTTCTCTTCCTTACACTGAATATTTGATGCAGGGTGCTCAGAAAAGTTCTAG

mRNA sequence

ATGACAACCCCTCCATCTCTCTTGTCTCTCACTATTCATTCTGCCATCCTTAATCTCTCTTCTATCTCTGATCTCTCTTTTCTCCCTGATCACATCGTTCTCCATCTATTCCTGGAAACTTTAAAGGCTGGAAAATTAAACGAGAGGGTTTTAAAGTTGTTTGTGGCAAGTGGAAAAGATGAAGTTCTTTCGCTCATTGGGGAATTTAAAATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGGTGCTCAGAAAAGTTCTAG

Coding sequence (CDS)

ATGACAACCCCTCCATCTCTCTTGTCTCTCACTATTCATTCTGCCATCCTTAATCTCTCTTCTATCTCTGATCTCTCTTTTCTCCCTGATCACATCGTTCTCCATCTATTCCTGGAAACTTTAAAGGCTGGAAAATTAAACGAGAGGGTTTTAAAGTTGTTTGTGGCAAGTGGAAAAGATGAAGTTCTTTCGCTCATTGGGGAATTTAAAATCCAGCAAATTGTCACCCCTGTTCTTCCTACCAGGTGCTCAGAAAAGTTCTAG

Protein sequence

MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKDEVLSLIGEFKIQQIVTPVLPTRCSEKF*
Homology
[Close]
BLAST of CsaV3_5G032690 vs. NCBI nr
Match: KGN51916.1 (hypothetical protein Csa_009430 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 8.5e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 88
          EVLSLIGEFKIQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of CsaV3_5G032690 vs. NCBI nr
Match: XP_004135176.1 (probable UDP-arabinopyranose mutase 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPT 82
          EVLSLIGEFKIQQIVTPVLPT
Sbjct: 61 EVLSLIGEFKIQQIVTPVLPT 81

[Close]
BLAST of CsaV3_5G032690 vs. NCBI nr
Match: KAG6577325.1 (hypothetical protein SDJN03_24899, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL LFLETL+AGKLNERVLKLFVA+GKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 88
          EVLSLI  F IQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of CsaV3_5G032690 vs. NCBI nr
Match: XP_016900275.1 (PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-32
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETL+AGKLNERVLKLFVASGKD
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLRAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPT 82
          EVLSLIG F IQQIVTPVLPT
Sbjct: 61 EVLSLIGAFNIQQIVTPVLPT 81

[Close]
BLAST of CsaV3_5G032690 vs. NCBI nr
Match: XP_022136568.1 (uncharacterized protein LOC111008243 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 5.4e-32
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MT PPSLLSLTIHSAILNLSSISDLSFLPDHIVL LFL+TL+AGKLNERVL+LFVA+G D
Sbjct: 1  MTPPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60

Query: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 88
          EVLSLI  F IQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of CsaV3_5G032690 vs. ExPASy TrEMBL
Match: A0A0A0KVY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605100 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 88
          EVLSLIGEFKIQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of CsaV3_5G032690 vs. ExPASy TrEMBL
Match: A0A6J1C7X9 (uncharacterized protein LOC111008243 OS=Momordica charantia OX=3673 GN=LOC111008243 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MT PPSLLSLTIHSAILNLSSISDLSFLPDHIVL LFL+TL+AGKLNERVL+LFVA+G D
Sbjct: 1  MTPPPSLLSLTIHSAILNLSSISDLSFLPDHIVLELFLQTLRAGKLNERVLRLFVATGND 60

Query: 61 EVLSLIGEFKIQQIVTPVLPTRCSEKF 88
          EVLSLI  F IQQIVTPVLPTRCSEKF
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPTRCSEKF 87

[Close]
BLAST of CsaV3_5G032690 vs. ExPASy TrEMBL
Match: A0A1S4DX21 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489119 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.6e-32
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETL+AGKLNERVLKLFVASGKD
Sbjct: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLRAGKLNERVLKLFVASGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPT 82
          EVLSLIG F IQQIVTPVLPT
Sbjct: 61 EVLSLIGAFNIQQIVTPVLPT 81

[Close]
BLAST of CsaV3_5G032690 vs. ExPASy TrEMBL
Match: A0A6J1J1W3 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482658 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL LFLETL+AGKLNERVLKLFVA+GKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPT 82
          EVLSLI  F IQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]
BLAST of CsaV3_5G032690 vs. ExPASy TrEMBL
Match: A0A6J1EMJ2 (probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435949 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.7e-28
Identity = 72/81 (88.89%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 1  MTTPPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKD 60
          MTTPPSLLSLTIHSAI NLS ISDLSFLPDH+VL LFLETL+AGKLNERVLKLFVA+GKD
Sbjct: 1  MTTPPSLLSLTIHSAIHNLSRISDLSFLPDHVVLDLFLETLRAGKLNERVLKLFVATGKD 60

Query: 61 EVLSLIGEFKIQQIVTPVLPT 82
          EVLSLI  F IQQIVTPVLPT
Sbjct: 61 EVLSLIEAFNIQQIVTPVLPT 81

[Close]
BLAST of CsaV3_5G032690 vs. TAIR 10
Match: AT4G30390.1 (unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 116.7 bits (291), Expect = 9.4e-27
Identity = 58/84 (69.05%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 4  PPSLLSLTIHSAILNLSSISDLSFLPDHIVLHLFLETLKAGKLNERVLKLFVASGKDEVL 63
          PPSLLSLT+++A+LN+S I+DLS LPDHIVL LF  TL+AGKLNERVL+LF+ASG +EVL
Sbjct: 5  PPSLLSLTVNAAVLNISRINDLSHLPDHIVLDLFARTLEAGKLNERVLRLFMASGNEEVL 64

Query: 64 SLIGEFKIQQIVTPVLPTRCSEKF 88
          S+I   KI+  V+P+LPTRC EKF
Sbjct: 65 SVIDALKIKINVSPILPTRCDEKF 88

The following BLAST results are available for this feature:
BLAST of CsaV3_5G032690 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51916.18.5e-38100.00hypothetical protein Csa_009430 [Cucumis sativus][more]
XP_004135176.11.3e-33100.00probable UDP-arabinopyranose mutase 5 isoform X2 [Cucumis sativus][more]
KAG6577325.12.4e-3289.66hypothetical protein SDJN03_24899, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_016900275.15.4e-3296.30PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Cucumis melo][more]
XP_022136568.15.4e-3288.51uncharacterized protein LOC111008243 [Momordica charantia][more]
BLAST of CsaV3_5G032690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G032690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVY44.1e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605100 PE=4 SV=1[more]
A0A6J1C7X92.6e-3288.51uncharacterized protein LOC111008243 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A1S4DX212.6e-3296.30probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1J1W31.7e-2888.89probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1EMJ21.7e-2888.89probable UDP-arabinopyranose mutase 5 isoform X2 OS=Cucurbita moschata OX=3662 G... [more]
BLAST of CsaV3_5G032690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30390.19.4e-2769.05unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G032690.1CsaV3_5G032690.1mRNA