CsaV3_5G032560 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G032560
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPentapeptide repeat
Locationchr5: 26350747 .. 26350944 (+)
RNA-Seq ExpressionCsaV3_5G032560
SyntenyCsaV3_5G032560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAACTTGGGATTCCAAATGGAGAGTTTTTTGTGGGTGATAATGGAGTTGATGGAGTGGCTTTGTGTGATGCTTTGTGGGAATTGGAAGATGAAGCTGCTAATTACTATACTCTTTTTCAATCTCAGCTTTTTATGTAGCCTTCTTCTTCTTCTTTTTTTTTTTTTTCCTATTAATTATGGAATCATATTGTAG

mRNA sequence

ATGATGAACTTGGGATTCCAAATGGAGAGTTTTTTGTGGGTGATAATGGAGTTGATGGAGTGGCTTTGTGTGATGCTTTGTGGGAATTGGAAGATGAAGCTGCTAATTACTATACTCTTTTTCAATCTCAGCTTTTTATGTAGCCTTCTTCTTCTTCTTTTTTTTTTTTTTCCTATTAATTATGGAATCATATTGTAG

Coding sequence (CDS)

ATGATGAACTTGGGATTCCAAATGGAGAGTTTTTTGTGGGTGATAATGGAGTTGATGGAGTGGCTTTGTGTGATGCTTTGTGGGAATTGGAAGATGAAGCTGCTAATTACTATACTCTTTTTCAATCTCAGCTTTTTATGTAGCCTTCTTCTTCTTCTTTTTTTTTTTTTTCCTATTAATTATGGAATCATATTGTAG

Protein sequence

MMNLGFQMESFLWVIMELMEWLCVMLCGNWKMKLLITILFFNLSFLCSLLLLLFFFFPINYGIIL*
Homology
[Close]
BLAST of CsaV3_5G032560 vs. NCBI nr
Match: KGN51902.1 (hypothetical protein Csa_008270 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MMNLGFQMESFLWVIMELMEWLCVMLCGNWKMKLLITILFFNLSFLCSLLLLLFFFFPIN 60
          MMNLGFQMESFLWVIMELMEWLCVMLCGNWKMKLLITILFFNLSFLCSLLLLLFFFFPIN
Sbjct: 1  MMNLGFQMESFLWVIMELMEWLCVMLCGNWKMKLLITILFFNLSFLCSLLLLLFFFFPIN 60

Query: 61 YGIIL 66
          YGIIL
Sbjct: 61 YGIIL 65

[Close]
BLAST of CsaV3_5G032560 vs. ExPASy TrEMBL
Match: A0A0A0KTZ5 (Pentapeptide repeat OS=Cucumis sativus OX=3659 GN=Csa_5G604960 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.7e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MMNLGFQMESFLWVIMELMEWLCVMLCGNWKMKLLITILFFNLSFLCSLLLLLFFFFPIN 60
          MMNLGFQMESFLWVIMELMEWLCVMLCGNWKMKLLITILFFNLSFLCSLLLLLFFFFPIN
Sbjct: 1  MMNLGFQMESFLWVIMELMEWLCVMLCGNWKMKLLITILFFNLSFLCSLLLLLFFFFPIN 60

Query: 61 YGIIL 66
          YGIIL
Sbjct: 61 YGIIL 65

The following BLAST results are available for this feature:
BLAST of CsaV3_5G032560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51902.11.4e-24100.00hypothetical protein Csa_008270 [Cucumis sativus][more]
BLAST of CsaV3_5G032560 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G032560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTZ56.7e-25100.00Pentapeptide repeat OS=Cucumis sativus OX=3659 GN=Csa_5G604960 PE=4 SV=1[more]
BLAST of CsaV3_5G032560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G032560.1CsaV3_5G032560.1mRNA