CsaV3_5G032380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G032380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 26215758 .. 26215946 (-)
RNA-Seq Expression	CsaV3_5G032380
Synteny	CsaV3_5G032380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAAAGACTGGGCAAAAGTTAAGCGTAGCTGCCCGGGGAAACGGGCAGAGACCAAACTGCCGGTCGTGTCAGCTGACCGTGGCCCGTGGTGCCAAATCAGAATGGACCAAACATTTGGGGCAGATAGAAAGTAGGGAAATCGGGCATGAGAGAGGAGATGACATGGCCCCACAGGGATGTTGA

mRNA sequence

ATGGAATCAAAGACTGGGCAAAAGTTAAGCGTAGCTGCCCGGGGAAACGGGCAGAGACCAAACTGCCGGTCGTGTCAGCTGACCGTGGCCCGTGGTGCCAAATCAGAATGGACCAAACATTTGGGGCAGATAGAAAGTAGGGAAATCGGGCATGAGAGAGGAGATGACATGGCCCCACAGGGATGTTGA

Coding sequence (CDS)

ATGGAATCAAAGACTGGGCAAAAGTTAAGCGTAGCTGCCCGGGGAAACGGGCAGAGACCAAACTGCCGGTCGTGTCAGCTGACCGTGGCCCGTGGTGCCAAATCAGAATGGACCAAACATTTGGGGCAGATAGAAAGTAGGGAAATCGGGCATGAGAGAGGAGATGACATGGCCCCACAGGGATGTTGA

Protein sequence

MESKTGQKLSVAARGNGQRPNCRSCQLTVARGAKSEWTKHLGQIESREIGHERGDDMAPQGC*

Homology

[Close]

BLAST of CsaV3_5G032380 vs. NCBI nr
Match: KGN51886.1 (hypothetical protein Csa_008813 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MESKTGQKLSVAARGNGQRPNCRSCQLTVARGAKSEWTKHLGQIESREIGHERGDDMAPQ 60
          MESKTGQKLSVAARGNGQRPNCRSCQLTVARGAKSEWTKHLGQIESREIGHERGDDMAPQ
Sbjct: 1  MESKTGQKLSVAARGNGQRPNCRSCQLTVARGAKSEWTKHLGQIESREIGHERGDDMAPQ 60

Query: 61 GC 63
          GC
Sbjct: 61 GC 62

[Close]

BLAST of CsaV3_5G032380 vs. ExPASy TrEMBL
Match: A0A0A0KVV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604310 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.1e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MESKTGQKLSVAARGNGQRPNCRSCQLTVARGAKSEWTKHLGQIESREIGHERGDDMAPQ 60
          MESKTGQKLSVAARGNGQRPNCRSCQLTVARGAKSEWTKHLGQIESREIGHERGDDMAPQ
Sbjct: 1  MESKTGQKLSVAARGNGQRPNCRSCQLTVARGAKSEWTKHLGQIESREIGHERGDDMAPQ 60

Query: 61 GC 63
          GC
Sbjct: 61 GC 62

The following BLAST results are available for this feature:

BLAST of CsaV3_5G032380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51886.1	1.7e-27	100.00	hypothetical protein Csa_008813 [Cucumis sativus]	[more]

BLAST of CsaV3_5G032380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G032380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVV3	8.1e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604310 PE=4 SV=1	[more]

BLAST of CsaV3_5G032380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G032380.1	CsaV3_5G032380.1	mRNA