CsaV3_5G032320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G032320
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 26173895 .. 26174137 (-)
RNA-Seq ExpressionCsaV3_5G032320
SyntenyCsaV3_5G032320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCCTGTAAATCAAACCAGACCACAACATTCGAGCACGAATTTTCAACGTTCGAAGCACAACTATATTTGCTCCTGCTGACATCTAAAGAACAAGATTCACAATTCTACACGTGCAAAGAGCAATCGGAATACCGGAATTTACACAACATTTCTCGGCTTAGTATGGCAAATGAAAGTTGTTTGTGGATGTTCTCTTCTGAACAGTGTTCGCAAGACAAGCTTTCTATCTACTGTTAA

mRNA sequence

ATGCTTGCCTGTAAATCAAACCAGACCACAACATTCGAGCACGAATTTTCAACGTTCGAAGCACAACTATATTTGCTCCTGCTGACATCTAAAGAACAAGATTCACAATTCTACACGTGCAAAGAGCAATCGGAATACCGGAATTTACACAACATTTCTCGGCTTAGTATGGCAAATGAAAGTTGTTTGTGGATGTTCTCTTCTGAACAGTGTTCGCAAGACAAGCTTTCTATCTACTGTTAA

Coding sequence (CDS)

ATGCTTGCCTGTAAATCAAACCAGACCACAACATTCGAGCACGAATTTTCAACGTTCGAAGCACAACTATATTTGCTCCTGCTGACATCTAAAGAACAAGATTCACAATTCTACACGTGCAAAGAGCAATCGGAATACCGGAATTTACACAACATTTCTCGGCTTAGTATGGCAAATGAAAGTTGTTTGTGGATGTTCTCTTCTGAACAGTGTTCGCAAGACAAGCTTTCTATCTACTGTTAA

Protein sequence

MLACKSNQTTTFEHEFSTFEAQLYLLLLTSKEQDSQFYTCKEQSEYRNLHNISRLSMANESCLWMFSSEQCSQDKLSIYC*
Homology
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BLAST of CsaV3_5G032320 vs. NCBI nr
Match: KAE8648739.1 (hypothetical protein Csa_009306 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MLACKSNQTTTFEHEFSTFEAQLYLLLLTSKEQDSQFYTCKEQSEYRNLHNISRLSMANE 60
          MLACKSNQTTTFEHEFSTFEAQLYLLLLTSKEQDSQFYTCKEQSEYRNLHNISRLSMANE
Sbjct: 1  MLACKSNQTTTFEHEFSTFEAQLYLLLLTSKEQDSQFYTCKEQSEYRNLHNISRLSMANE 60

Query: 61 SCLWMFSSEQCSQDKLSIYC 81
          SCLWMFSSEQCSQDKLSIYC
Sbjct: 61 SCLWMFSSEQCSQDKLSIYC 80

The following BLAST results are available for this feature:
BLAST of CsaV3_5G032320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648739.11.3e-37100.00hypothetical protein Csa_009306 [Cucumis sativus][more]
BLAST of CsaV3_5G032320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G032320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G032320 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G032320.1CsaV3_5G032320.1mRNA