CsaV3_5G031840 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G031840
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionB-like cyclin
Locationchr5: 25919038 .. 25919657 (-)
RNA-Seq ExpressionCsaV3_5G031840
SyntenyCsaV3_5G031840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGTGGCATTATGGTTTCAAGTTCCAAGTTTGAAGTGATTTTGAATTTTGGATCAAAAGTTTCTCAATCTTCAACAACGATATTTTGGTGATAAAATTGATAAAGGTGACTCCAATTTTACACCTTTTGGTGCGTGGCATGGCATGGCATGGCATGGGGGATGGCATGCTCTTGCTTGTGTGTGTGTATTGTATGAGTGGAACTGCCCGCCCCTTCGGCTGGAGGAAGTGCCTCTGTTTTTTTTTTTTTGTTCTTGAGTTTGTGTAAGTTTTATTTTTATAGCTGAAGGGGAAAAAAAAATCCCAATTATACAGAAAGGTCTTTGGGGCCTTTGAATGCTTTGTTGTATTGGTTTTGTTCAATCAATGTGATTAATTTTCATTCAATTTCTCTCTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTCACTCTATGTGACTCTGTCTATTCACATGTGATTGACAATCAATACTTTGTAGCTTTGTGAATTGGGTTTTCTTTTCTGTATCATAGTGTTTATTAGGATCTCCTTTAACCAGCTGGCTGGCCCCTCCGATGAGCTAAACTCCGGTGATGACCTCCTCGGCCGTGGCTGTTTTCATCTTAATTAA

mRNA sequence

ATGGAGCAGTGGCATTATGGTTTCAAGTTCCAATTTCTCAATCTTCAACAACGATATTTTGGTGATAAAATTGATAAAGGTGACTCCAATTTTACACCTTTTGGTGCGTGGCATGGCATGGCATGGCATGGGGGATGGCATGCTCTTGCTTGTGTGTGTGTATTGTATGAGTGGAACTGCCCGCCCCTTCGGCTGGAGGAAGTGCCTCTGATCTCCTTTAACCAGCTGGCTGGCCCCTCCGATGAGCTAAACTCCGGTGATGACCTCCTCGGCCGTGGCTGTTTTCATCTTAATTAA

Coding sequence (CDS)

ATGGAGCAGTGGCATTATGGTTTCAAGTTCCAATTTCTCAATCTTCAACAACGATATTTTGGTGATAAAATTGATAAAGGTGACTCCAATTTTACACCTTTTGGTGCGTGGCATGGCATGGCATGGCATGGGGGATGGCATGCTCTTGCTTGTGTGTGTGTATTGTATGAGTGGAACTGCCCGCCCCTTCGGCTGGAGGAAGTGCCTCTGATCTCCTTTAACCAGCTGGCTGGCCCCTCCGATGAGCTAAACTCCGGTGATGACCTCCTCGGCCGTGGCTGTTTTCATCTTAATTAA

Protein sequence

MEQWHYGFKFQFLNLQQRYFGDKIDKGDSNFTPFGAWHGMAWHGGWHALACVCVLYEWNCPPLRLEEVPLISFNQLAGPSDELNSGDDLLGRGCFHLN*
Homology
[Close]
BLAST of CsaV3_5G031840 vs. NCBI nr
Match: KGN51834.1 (hypothetical protein Csa_007929 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 1.0e-55
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MEQWHYGFKFQFLNLQQRYFGDKIDKGDSNFTPFGAWHGMAWHGGWHALACVCVLYEWNC 60
          MEQWHYGFKFQFLNLQQRYFGDKIDKGDSNFTPFGAWHGMAWHGGWHALACVCVLYEWNC
Sbjct: 1  MEQWHYGFKFQFLNLQQRYFGDKIDKGDSNFTPFGAWHGMAWHGGWHALACVCVLYEWNC 60

Query: 61 PPLRLEEVPLISFNQLAGPSDELNSGDDLLGRGCFHLN 99
          PPLRLEEVPLISFNQLAGPSDELNSGDDLLGRGCFHLN
Sbjct: 61 PPLRLEEVPLISFNQLAGPSDELNSGDDLLGRGCFHLN 98

[Close]
BLAST of CsaV3_5G031840 vs. NCBI nr
Match: TYK15579.1 (cyclin-D1-1 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 68  VPLISFNQLAGPSDELNSGDDLLGRGCFHLN 99
           +P ISFNQLAGPSDELNSGDDLLGRGCFHLN
Sbjct: 282 LPQISFNQLAGPSDELNSGDDLLGRGCFHLN 312

[Close]
BLAST of CsaV3_5G031840 vs. ExPASy TrEMBL
Match: A0A0A0KSE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603310 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.9e-56
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MEQWHYGFKFQFLNLQQRYFGDKIDKGDSNFTPFGAWHGMAWHGGWHALACVCVLYEWNC 60
          MEQWHYGFKFQFLNLQQRYFGDKIDKGDSNFTPFGAWHGMAWHGGWHALACVCVLYEWNC
Sbjct: 1  MEQWHYGFKFQFLNLQQRYFGDKIDKGDSNFTPFGAWHGMAWHGGWHALACVCVLYEWNC 60

Query: 61 PPLRLEEVPLISFNQLAGPSDELNSGDDLLGRGCFHLN 99
          PPLRLEEVPLISFNQLAGPSDELNSGDDLLGRGCFHLN
Sbjct: 61 PPLRLEEVPLISFNQLAGPSDELNSGDDLLGRGCFHLN 98

[Close]
BLAST of CsaV3_5G031840 vs. ExPASy TrEMBL
Match: A0A5D3CZH1 (B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00730 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.0e-08
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 68  VPLISFNQLAGPSDELNSGDDLLGRGCFHLN 99
           +P ISFNQLAGPSDELNSGDDLLGRGCFHLN
Sbjct: 282 LPQISFNQLAGPSDELNSGDDLLGRGCFHLN 312

The following BLAST results are available for this feature:
BLAST of CsaV3_5G031840 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51834.11.0e-55100.00hypothetical protein Csa_007929 [Cucumis sativus][more]
TYK15579.11.0e-0793.55cyclin-D1-1 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_5G031840 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G031840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSE94.9e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603310 PE=4 SV=1[more]
A0A5D3CZH15.0e-0893.55B-like cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00730 P... [more]
BLAST of CsaV3_5G031840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G031840.1CsaV3_5G031840.1mRNA