CsaV3_5G029330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G029330
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionGDSL esterase/lipase
Locationchr5: 24344139 .. 24345602 (-)
RNA-Seq ExpressionCsaV3_5G029330
SyntenyCsaV3_5G029330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAAACATTCTTAAGGTTTTATGTTTTATATGGTTGAATGTGTCATACTGACGATTTCATGTCATTCGCATGGAAATTTTAAAATTGTTGTATTTTAAAAATTCGGAGACAAAATGAGTTAATTTTTATATAATCGTAGGGTCCAAAAACATAAGTTTTTAAAAGTCTGATAGCTAACAGACATATTTTATAAAACTTGAGGGAGTAAAGATGGGTAATTTTGCACCTTCTTTTTGGCTAACAATTTGTGTGTATAAATTACAATGTTTTATAGGGACATTTAAACATTTAACATTAGATTAGAAATTAGAAGGAAAAAGTTCGAGGAAGGAGTTGAAGCCGTGATCGATTTTCCCGCCTTCTTCAATCACAATCATTTCCTCCGTTTCTCTTCAATCAACAGCACCTCATCCCAATCCTTTGCCTCCAACTCTCTTGTTCCCGCCCTTTTCGTCATCCACGACTCCGGGCCGATCATCTTCCCTACGGTTGAGATTTCGACACCCGTACTACCACTGGAAGGTTCTGTAATGGAAGAATTCCCGTCGATTTTCTTGGTATTCTTTCTTTCTTGATTCTTTCCGTTCTTCTTTCTGGATATCTTATGATTTCTTTAAACTTCCTTTACGTTTGATTCCTTGTTTTTGTTTCTGGGTGTTCTTCTCAGCCCTACGTCTTGGACTTCCGTTTGTTCTGAGTTATCTTGGGCACGTTGGAGCAGTGGAAGATATGATTCAAGGAGTGAATTACGCATCGGCTAGTGCTGGAATTATCCAATTCAGTCCTTTACATATCAATTGGAATTAACGATTACATTCATTACTATCTTTTTAATATATCCAATGTTCAAAATCTTTACCCTCCATGGAATTTTAACCAATTTCTTGCAGCCACAATCAGACAGGAAATCAAGGTGATTTTATTGTTTATAGTTTTTGCTATGCTACATAATGGAAAAAAGTATATGCATACATTACCCATTATGCAATCTCTTTGCCTTCGGGATATTGTTGTTTTGCACATATTTTCATTTTCCAAAGTTTGAGCTTTTGGATTATTTTAGATATTGGAAACTAACCATGCATTATATTGTAAGCCCTGCATAGAAGTTTCGTTTATTTCCACTGTACTAATTTACCAATTGTTCAAGTACTTCCTAAAAGGCTTTGTGTTGATGGTCCAGAATTTGTATTACATGAATGCTAGGAGAACCGTTGTAATGGGATTGGCACCTATTGGTTGTGCTCCTTTCTACCTATGACAGTACCGTGATGAGAATGCTGCGTGTACTGAGGATATAAATGATATGGTTATAGAGTTCAACTTTTCCATGAGATACACGGTCAAGGAGCTCGGCACGGAGCTGCACCATTCGAGTATAATCTTATGTGATTTGCTTCGAGTTTCAATGGATATCTTGAAGGATCATATTTGTGTTCTTCAAGGTTCAATGGACTAG

mRNA sequence

ATGAGGCAAACATTCTTAAGATTAGAAATTAGAAGGAAAAAGTTCGAGGAAGGAGTTGAAGCCGTGATCGATTTTCCCGCCTTCTTCAATCACAATCATTTCCTCCGTTTCTCTTCAATCAACAGCACCTCATCCCAATCCTTTGCCTCCAACTCTCTTGTTCCCGCCCTTTTCGTCATCCACGACTCCGGGCCGATCATCTTCCCTACGGTTGAGATTTCGACACCCGTACTACCACTGGAAGGTTCTGTAATGGAAGAATTCCCGTCGATTTTCTTGTACCGTGATGAGAATGCTGCGTGTACTGAGGATATAAATGATATGGTTATAGAGTTCAACTTTTCCATGAGATACACGGTCAAGGAGCTCGGCACGGAGCTGCACCATTCGAGTATAATCTTATGTGATTTGCTTCGAGTTTCAATGGATATCTTGAAGGATCATATTTGTGTTCTTCAAGGTTCAATGGACTAG

Coding sequence (CDS)

ATGAGGCAAACATTCTTAAGATTAGAAATTAGAAGGAAAAAGTTCGAGGAAGGAGTTGAAGCCGTGATCGATTTTCCCGCCTTCTTCAATCACAATCATTTCCTCCGTTTCTCTTCAATCAACAGCACCTCATCCCAATCCTTTGCCTCCAACTCTCTTGTTCCCGCCCTTTTCGTCATCCACGACTCCGGGCCGATCATCTTCCCTACGGTTGAGATTTCGACACCCGTACTACCACTGGAAGGTTCTGTAATGGAAGAATTCCCGTCGATTTTCTTGTACCGTGATGAGAATGCTGCGTGTACTGAGGATATAAATGATATGGTTATAGAGTTCAACTTTTCCATGAGATACACGGTCAAGGAGCTCGGCACGGAGCTGCACCATTCGAGTATAATCTTATGTGATTTGCTTCGAGTTTCAATGGATATCTTGAAGGATCATATTTGTGTTCTTCAAGGTTCAATGGACTAG

Protein sequence

MRQTFLRLEIRRKKFEEGVEAVIDFPAFFNHNHFLRFSSINSTSSQSFASNSLVPALFVIHDSGPIIFPTVEISTPVLPLEGSVMEEFPSIFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDHICVLQGSMD*
Homology
BLAST of CsaV3_5G029330 vs. NCBI nr
Match: KAE8648631.1 (hypothetical protein Csa_009148 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 2.9e-81
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0

Query: 1   MRQTFLRLEIRRKKFEEGVEAVIDFPAFFNHNHFLRFSSINSTSSQSFASNSLVPALFVI 60
           MRQTFLRLEIRRKKFEEGVEAVIDFPAFFNHNHFLRFSSINSTSSQSFASNSLVPALFVI
Sbjct: 1   MRQTFLRLEIRRKKFEEGVEAVIDFPAFFNHNHFLRFSSINSTSSQSFASNSLVPALFVI 60

Query: 61  HDSGPIIFPTVEISTPVLPLEGSVMEEFPSIFLYRDENAACTEDINDMVIEFNFSMRYTV 120
           HDSGPIIFPTVEISTPVLPLEGSVMEEFPSIFLYRDENAACTEDINDMVIEFNFSMRYTV
Sbjct: 61  HDSGPIIFPTVEISTPVLPLEGSVMEEFPSIFLYRDENAACTEDINDMVIEFNFSMRYTV 120

Query: 121 KELGTELHHSSIILCDLLRVSMDILKDHICVLQGSMD 158
           KELGTELHHSSIILCDLLRVSMDILKDHICVLQGSMD
Sbjct: 121 KELGTELHHSSIILCDLLRVSMDILKDHICVLQGSMD 157

BLAST of CsaV3_5G029330 vs. NCBI nr
Match: KGN53427.2 (hypothetical protein Csa_014736 [Cucumis sativus])

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-15
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDHIC 150
           ++ Y  ENAACTE+INDMVI+FNF MRY V+EL  EL  S+II  DLLR  MDILK+HIC
Sbjct: 112 LWQYLGENAACTEEINDMVIKFNFFMRYMVEELSMELPDSNIIFSDLLRGLMDILKNHIC 171

Query: 151 VLQGSMD 158
            LQGSMD
Sbjct: 172 ALQGSMD 178

BLAST of CsaV3_5G029330 vs. NCBI nr
Match: XP_008452220.1 (PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo] >KAA0060544.1 GDSL esterase/lipase [Cucumis melo var. makuwa] >TYK00787.1 GDSL esterase/lipase [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 7.7e-13
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDH 149
           ++ YR EN AC E+INDMV+EFNF+MRY V+ELG EL  SSII CDLL  SMDILK+H
Sbjct: 269 LWQYRSENGACIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLEGSMDILKNH 326

BLAST of CsaV3_5G029330 vs. NCBI nr
Match: XP_004145656.2 (GDSL esterase/lipase At1g71691 [Cucumis sativus] >KGN57733.1 hypothetical protein Csa_010616 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-12
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDH 149
           ++ YR EN AC E+INDMV+EFNF+MRY V+ELG EL  S+II CDLL+ SMDILK+H
Sbjct: 267 LWQYRSENGACIEEINDMVMEFNFAMRYVVEELGMELPDSNIIFCDLLQGSMDILKNH 324

BLAST of CsaV3_5G029330 vs. NCBI nr
Match: XP_038904573.1 (GDSL esterase/lipase At1g71691 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDH 149
           ++ Y  EN  C E+INDMV+EFNF+MRY V+ELG EL  SSII CDLL+ SMDILK+H
Sbjct: 264 LWQYGSENGECIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLQGSMDILKNH 321

BLAST of CsaV3_5G029330 vs. ExPASy TrEMBL
Match: A0A0A0KPS9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582210 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 93  LYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDHICVL 152
           +YRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDHICVL
Sbjct: 55  VYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDHICVL 114

Query: 153 QGSMD 158
           QGSMD
Sbjct: 115 QGSMD 119

BLAST of CsaV3_5G029330 vs. ExPASy TrEMBL
Match: A0A0A0KZW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052660 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDHIC 150
           ++ Y  ENAACTE+INDMVI+FNF MRY V+EL  EL  S+II  DLLR  MDILK+HIC
Sbjct: 87  LWQYLGENAACTEEINDMVIKFNFFMRYMVEELSMELPDSNIIFSDLLRGLMDILKNHIC 146

Query: 151 VLQGSMD 158
            LQGSMD
Sbjct: 147 ALQGSMD 153

BLAST of CsaV3_5G029330 vs. ExPASy TrEMBL
Match: A0A5A7UZU1 (GDSL esterase/lipase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00560 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDH 149
           ++ YR EN AC E+INDMV+EFNF+MRY V+ELG EL  SSII CDLL  SMDILK+H
Sbjct: 269 LWQYRSENGACIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLEGSMDILKNH 326

BLAST of CsaV3_5G029330 vs. ExPASy TrEMBL
Match: A0A1S3BSQ9 (GDSL esterase/lipase At1g71691-like OS=Cucumis melo OX=3656 GN=LOC103493303 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.7e-13
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDH 149
           ++ YR EN AC E+INDMV+EFNF+MRY V+ELG EL  SSII CDLL  SMDILK+H
Sbjct: 269 LWQYRSENGACIEEINDMVMEFNFAMRYMVEELGMELPDSSIIFCDLLEGSMDILKNH 326

BLAST of CsaV3_5G029330 vs. ExPASy TrEMBL
Match: A0A0A0L7F0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270280 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-13
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 91  IFLYRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDH 149
           ++ YR EN AC E+INDMV+EFNF+MRY V+ELG EL  S+II CDLL+ SMDILK+H
Sbjct: 267 LWQYRSENGACIEEINDMVMEFNFAMRYVVEELGMELPDSNIIFCDLLQGSMDILKNH 324

BLAST of CsaV3_5G029330 vs. TAIR 10
Match: AT4G10950.1 (SGNH hydrolase-type esterase superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-11
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 0

Query: 94  YRDENAACTEDINDMVIEFNFSMRYTVKELGTELHHSSIILCDLLRVSMDILKDH 149
           YR +N  C E++N M++E NF MRYTV +L  EL  +SII CD+ + +MDIL++H
Sbjct: 269 YRSQNGECAEEVNSMIMESNFVMRYTVDKLNRELPGASIIYCDVFQSAMDILRNH 323

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648631.12.9e-81100.00hypothetical protein Csa_009148 [Cucumis sativus][more]
KGN53427.22.8e-1568.66hypothetical protein Csa_014736 [Cucumis sativus][more]
XP_008452220.17.7e-1368.97PREDICTED: GDSL esterase/lipase At1g71691-like [Cucumis melo] >KAA0060544.1 GDSL... [more]
XP_004145656.21.0e-1267.24GDSL esterase/lipase At1g71691 [Cucumis sativus] >KGN57733.1 hypothetical protei... [more]
XP_038904573.11.4e-1165.52GDSL esterase/lipase At1g71691 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KPS93.1e-2898.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G582210 PE=4 SV=1[more]
A0A0A0KZW01.4e-1568.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052660 PE=3 SV=1[more]
A0A5A7UZU13.7e-1368.97GDSL esterase/lipase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420... [more]
A0A1S3BSQ93.7e-1368.97GDSL esterase/lipase At1g71691-like OS=Cucumis melo OX=3656 GN=LOC103493303 PE=3... [more]
A0A0A0L7F04.8e-1367.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G270280 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10950.13.4e-1150.91SGNH hydrolase-type esterase superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR45648:SF13OS02G0290900 PROTEINcoord: 92..148
NoneNo IPR availablePANTHERPTHR45648GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700)coord: 92..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G029330.1CsaV3_5G029330.1mRNA