CsaV3_5G029200 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G029200
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transcription termination factor MTERF5
Location	chr5: 24269504 .. 24271357 (+)
RNA-Seq Expression	CsaV3_5G029200
Synteny	CsaV3_5G029200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCTTAGGAAAAAAAAATCAATATATACTCTGCCCAGCTCACAACCCTAACTTCAACCTTTTTCTTGAAACCTTTCGATCCAAACCCAAAATGTGTAAGATTTCGTCCACATTTTTTCTATATTTCATACAAAAACGTTTCGTCAATACGGTTTCTACTCCTACGTTGCCTTCAGCGTCTGTTTCCACAATTGAATTCCTCAAAAATTCATGTGGGCTTCCTTCAGAATCTCCTTCTTCCGCCCGTCAAAACCCCCAAATAGATGAAAGAAACATCCAGCACTACCAAGCCATTCTCGGTATCTTGCAATCGCATGGATTCGAGAATTCACAGATCGCCAAGTTGGTTTCGAGACAACCTTCGGTTCTTCGATCCAAAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGAAATCGGGTTCGATGGTCCTTTACTTCCTAAGCTAATTCTATCAAACCCTTGGATTCTTAGCAGGAGCTTAGATTCTCATTTGAAACCATCATTTTTTTTCTTGAAGGAAATTCTTGAATCGGATGAAAAAGTAATTGCTTCTATTCGTCGTTCTTCGTGGCTTCTAACTTTTGATTGTAAGGGTATTTTAAAATCTAACATTGATTTATTGGTCAGTGAAGGTGTACCTTCTTGGAGAATAGCGACACTGATTGTAACGCAGCCTAGAACTATAATGCGAAAGCTTGATACAATGATTGAAGTAGTCAAAAGGGTTAAAGAATTGGGCATTGAACCAAAGGCTACTATGTTTCTTCATGCACTTAGAGTAAGGAGTTCAATGAATGATTCAACTTGGGAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAATGTCCACTTTATTTAATTCGTTCAGAGGAGAAAATGAGGGTTGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATCCAGAAGTTGTAATTTTTTACCCTAAGTTATTCATGTGTGCACTGGACAACCGGCTCCGACGGAGGTACAAAGTTCTTGAGGTTTTAAAGGCTAAAAATCTTCTTAAGAGTAAAAAGATTGCTTGGATGCTTTTAGTAGCGGAGAAAAGATTTGTGGAGATTTGTGTTCTTAAGCATTTGGATGAAATCCCAAATCTTATGGACGTGTACCGGGGCAATGTCGCAGCCGAAACCAGTTCTGTTCAATAGGACTGGAAAGTTGTAAGTTCAAAACATTCTATTAGTTTAATTTCAGCATCATTGTCTTCAAAATGGGAGAGCATTTTTTTCTTGTCATTCAAAGAACACTGCTTCTTGAGCTTGTCAAGATTTCTCTCTCATTTCAAGTGGGAGACTTCTGTTATTTTCCCTTCTAATTTGATACTGTTAGCTAATTCTTTTGCTGTATACTTCTTAGAGTTGAAATTGAGAGGCCTTTTGTTTTTCCCTTCCTAATCTTTCGAACAAAAGCACTGGCAAGCTTCTCACTAGAAGCTGGCTTCGTCTTCTACGTCGTGGTTCAAGTTAGTGTTGGGCACATAGTTATTCAAGAAAAGGCATATATATATTTATATATATGTATTCTCTTGGATTTTGGATGAGTTTGTGCTCCATGGATAGAAGGAATGAACTTCATTTCTCAATTTCACCAAGCTACCCACATCAAGAGTTTTGTTAAGCCCTTTTTTCCTCTATTGTTTTTCTTGCTTCGGCTACTTTACTCCATTTTAAAGCAGAAGGATAGATATTTGCAAGCAAAACATGGTAGCTGCCTTCATGCTCAAACAATTTGTTAGCTGCTTTCTCTCCCAATTCAACATTTTTGCGAATTTTACAAGCACCCAACATG

mRNA sequence

ATGTGTAAGATTTCGTCCACATTTTTTCTATATTTCATACAAAAACGTTTCGTCAATACGGTTTCTACTCCTACGTTGCCTTCAGCGTCTGTTTCCACAATTGAATTCCTCAAAAATTCATGTGGGCTTCCTTCAGAATCTCCTTCTTCCGCCCGTCAAAACCCCCAAATAGATGAAAGAAACATCCAGCACTACCAAGCCATTCTCGGTATCTTGCAATCGCATGGATTCGAGAATTCACAGATCGCCAAGTTGGTTTCGAGACAACCTTCGGTTCTTCGATCCAAAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGAAATCGGGTTCGATGGTCCTTTACTTCCTAAGCTAATTCTATCAAACCCTTGGATTCTTAGCAGGAGCTTAGATTCTCATTTGAAACCATCATTTTTTTTCTTGAAGGAAATTCTTGAATCGGATGAAAAAGTAATTGCTTCTATTCGTCGTTCTTCGTGGCTTCTAACTTTTGATTGTAAGGGTATTTTAAAATCTAACATTGATTTATTGGTCAGTGAAGGTGTACCTTCTTGGAGAATAGCGACACTGATTGTAACGCAGCCTAGAACTATAATGCGAAAGCTTGATACAATGATTGAAGTAGTCAAAAGGGTTAAAGAATTGGGCATTGAACCAAAGGCTACTATGTTTCTTCATGCACTTAGAGTAAGGAGTTCAATGAATGATTCAACTTGGGAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAATGTCCACTTTATTTAATTCGTTCAGAGGAGAAAATGAGGGTTGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATCCAGAAGTTGTAATTTTTTACCCTAAGTTATTCATGTGTGCACTGGACAACCGGCTCCGACGGAGGTACAAAGTTCTTGAGGTTTTAAAGGCTAAAAATCTTCTTAAGAGTAAAAAGATTGCTTGGATGCTTTTAGTAGCGGAGAAAAGATTTGTGGAGATTTGTGTTCTTAAGCATTTGGATGAAATCCCAAATCTTATGGACGTGTACCGGGGCAATGTCGCAGCCGAAACCAGTTCTGTTCAATAG

Coding sequence (CDS)

ATGTGTAAGATTTCGTCCACATTTTTTCTATATTTCATACAAAAACGTTTCGTCAATACGGTTTCTACTCCTACGTTGCCTTCAGCGTCTGTTTCCACAATTGAATTCCTCAAAAATTCATGTGGGCTTCCTTCAGAATCTCCTTCTTCCGCCCGTCAAAACCCCCAAATAGATGAAAGAAACATCCAGCACTACCAAGCCATTCTCGGTATCTTGCAATCGCATGGATTCGAGAATTCACAGATCGCCAAGTTGGTTTCGAGACAACCTTCGGTTCTTCGATCCAAAGTATCCACCAATCTGAAGCCTAAATTTGAGTTCCTCCAGGAAATCGGGTTCGATGGTCCTTTACTTCCTAAGCTAATTCTATCAAACCCTTGGATTCTTAGCAGGAGCTTAGATTCTCATTTGAAACCATCATTTTTTTTCTTGAAGGAAATTCTTGAATCGGATGAAAAAGTAATTGCTTCTATTCGTCGTTCTTCGTGGCTTCTAACTTTTGATTGTAAGGGTATTTTAAAATCTAACATTGATTTATTGGTCAGTGAAGGTGTACCTTCTTGGAGAATAGCGACACTGATTGTAACGCAGCCTAGAACTATAATGCGAAAGCTTGATACAATGATTGAAGTAGTCAAAAGGGTTAAAGAATTGGGCATTGAACCAAAGGCTACTATGTTTCTTCATGCACTTAGAGTAAGGAGTTCAATGAATGATTCAACTTGGGAGAAGAAAATAAATGTTTTGAAGAGTTTAGGATGGTCTGAGAAGGAGATTCTTACAGCATTTAAGAAATGTCCACTTTATTTAATTCGTTCAGAGGAGAAAATGAGGGTTGTTGCAGATTTCTGTTTCAACACTGCAAAGTTGGATCCAGAAGTTGTAATTTTTTACCCTAAGTTATTCATGTGTGCACTGGACAACCGGCTCCGACGGAGGTACAAAGTTCTTGAGGTTTTAAAGGCTAAAAATCTTCTTAAGAGTAAAAAGATTGCTTGGATGCTTTTAGTAGCGGAGAAAAGATTTGTGGAGATTTGTGTTCTTAAGCATTTGGATGAAATCCCAAATCTTATGGACGTGTACCGGGGCAATGTCGCAGCCGAAACCAGTTCTGTTCAATAG

Protein sequence

MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDERNIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPKLILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLLVSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDSTWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPKLFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDVYRGNVAAETSSVQ*

Homology

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BLAST of CsaV3_5G029200 vs. NCBI nr
Match: KAE8648625.1 (hypothetical protein Csa_009427 [Cucumis sativus])

HSP 1 Score: 728.4 bits (1879), Expect = 3.1e-206
Identity = 373/373 (100.00%), Postives = 373/373 (100.00%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER
Sbjct: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK
Sbjct: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL
Sbjct: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
           VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS
Sbjct: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK
Sbjct: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
           LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV
Sbjct: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360

Query: 361 YRGNVAAETSSVQ 374
           YRGNVAAETSSVQ
Sbjct: 361 YRGNVAAETSSVQ 373

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BLAST of CsaV3_5G029200 vs. NCBI nr
Match: XP_031741753.1 (transcription termination factor MTERF5, chloroplastic [Cucumis sativus] >KAE8648635.1 hypothetical protein Csa_008645 [Cucumis sativus])

HSP 1 Score: 555.4 bits (1430), Expect = 3.6e-154
Identity = 288/372 (77.42%), Postives = 323/372 (86.83%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M KISSTFFLYF QKRFVNTVSTPTLP ASVSTIEFL+NSCGLPS+SPSSAR+N Q D++
Sbjct: 1   MSKISSTFFLYFTQKRFVNTVSTPTLPLASVSTIEFLRNSCGLPSQSPSSARRNLQFDQK 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
             Q Y+AI+G L+S+GFEN QIA LVSR P +L S+VSTNLKPKFEFL+EIG  GP L K
Sbjct: 61  TSQKYEAIIGFLKSYGFENPQIANLVSRGPWILGSRVSTNLKPKFEFLEEIGVVGPSLRK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LILS+PWIL+RSLDS LKPSF FLKE+LESDE+V A+I RSSWLLT + KG ++SNIDLL
Sbjct: 121 LILSSPWILARSLDSQLKPSFCFLKELLESDEQVTAAICRSSWLLTSNFKGNMRSNIDLL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
           VSEGVPS  IATLIVTQPRTIMRK+D MI+ VK VKELG+EPK   F++ALRVR S+NDS
Sbjct: 181 VSEGVPSRGIATLIVTQPRTIMRKVDRMIQAVKMVKELGVEPKDCKFVYALRVRVSLNDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
            W+KKINVLKSLGWSEKEI TAFKK P YL  S EKMR VADFCFNTA LDPE VIFYPK
Sbjct: 241 AWKKKINVLKSLGWSEKEIFTAFKKDPNYLACSVEKMRDVADFCFNTANLDPETVIFYPK 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
           LF+ ALDNRLR RY+VLE+LKAKNLLK+KKIAWML++ EKRFV+ C+LKHLDEIPNLMDV
Sbjct: 301 LFIGALDNRLRPRYRVLEILKAKNLLKNKKIAWMLVIEEKRFVKTCILKHLDEIPNLMDV 360

Query: 361 YRGNVAAETSSV 373
           YRGNVAAET SV
Sbjct: 361 YRGNVAAETRSV 372

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BLAST of CsaV3_5G029200 vs. NCBI nr
Match: XP_008446011.1 (PREDICTED: uncharacterized protein LOC103488865 [Cucumis melo] >KAA0034174.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa] >TYK15745.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 516.2 bits (1328), Expect = 2.4e-142
Identity = 270/372 (72.58%), Postives = 309/372 (83.06%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M K SSTF L+FIQKRF+NTVST TLP ASVST+EFL NSCGL S SP+S  +  Q DE+
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTVEFLTNSCGLSSGSPTSNGRKLQFDEK 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           NIQ Y+A++G L+SHG EN QIAKLVSR+P +L+SKVSTNLKPKFEFLQEIGF GPLL K
Sbjct: 61  NIQQYEAVIGFLKSHGLENPQIAKLVSRKPWILQSKVSTNLKPKFEFLQEIGFVGPLLSK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LILSNP I  R+LDS LKPSFFFLKEILESDE+V A+IR S WLL  D KGILKSNID+L
Sbjct: 121 LILSNPRIFYRNLDSQLKPSFFFLKEILESDEQVTAAIRHSPWLLISDFKGILKSNIDVL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
            SEGVPS  IA LIV+  RTIMRK+D MIEVVK VKELGIEPKA MF+HALR+R S++DS
Sbjct: 181 ASEGVPSRNIAKLIVSNSRTIMRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TW+KKINV+KSLGWSE EI TAFKK P +L  SEEKMR VADFCFNTAKLDP  VI  PK
Sbjct: 241 TWKKKINVMKSLGWSETEIFTAFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICPK 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
           +F C++D RL+ RYKVLEVLK KNLLK+  IAW+L+ +E+ FV+  V++HLDEIPNLMD+
Sbjct: 301 IFKCSVDKRLQPRYKVLEVLKVKNLLKNVNIAWVLVQSERAFVKKFVVRHLDEIPNLMDI 360

Query: 361 YRGNVAAETSSV 373
           YRGNV AET SV
Sbjct: 361 YRGNVTAETKSV 372

[Close]

BLAST of CsaV3_5G029200 vs. NCBI nr
Match: XP_031740903.1 (transcription termination factor MTERF5, chloroplastic [Cucumis sativus] >KAE8647997.1 hypothetical protein Csa_021392 [Cucumis sativus])

HSP 1 Score: 503.1 bits (1294), Expect = 2.1e-138
Identity = 258/372 (69.35%), Postives = 302/372 (81.18%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M KISSTF L+FI KR +NT+ST TLP  SVSTI+FL NSC L S S +SA +  Q DE+
Sbjct: 1   MSKISSTFLLHFIFKRLLNTISTSTLPLPSVSTIQFLTNSCALSSGSTTSAGRKLQFDEK 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           NIQ Y+AI+G L+SHGFEN QIA LVSR+PS+L+S+VSTNL PKF FLQEIGF GPLLPK
Sbjct: 61  NIQQYEAIIGFLKSHGFENPQIANLVSRRPSILQSRVSTNLNPKFGFLQEIGFVGPLLPK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LILSNP +L RSLDSHLKPSFFFLKEILESDE+V  ++ R   LLT+D KG++KSN+D L
Sbjct: 121 LILSNPTLLFRSLDSHLKPSFFFLKEILESDERVTTAVCRFPRLLTYDFKGVIKSNVDFL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
           VSEG+PS  IA +I  QP TI++K D MI VVK VKELGIEPK  MF++A+  RSSM+DS
Sbjct: 181 VSEGMPSRNIANMIAMQPITILQKADRMIRVVKTVKELGIEPKGPMFVYAVLSRSSMSDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TW+ K+NV+KSLGWSE EILTAFK+ P YL  SEEKMR VADFCFNTAK DP  VI YP 
Sbjct: 241 TWKNKVNVMKSLGWSENEILTAFKRYPRYLTCSEEKMREVADFCFNTAKFDPGTVITYPM 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
            FMC+++ RL+ RYKV+EVLK KNLLK+KKIAW+LL  E+ FVE CV+KHLDEIPNLMD+
Sbjct: 301 FFMCSVEKRLQPRYKVIEVLKVKNLLKNKKIAWLLLQGERNFVEKCVVKHLDEIPNLMDI 360

Query: 361 YRGNVAAETSSV 373
           YRG VAAET  V
Sbjct: 361 YRGIVAAETKCV 372

[Close]

BLAST of CsaV3_5G029200 vs. NCBI nr
Match: XP_031741173.1 (uncharacterized protein LOC101219984 [Cucumis sativus] >KAE8648634.1 hypothetical protein Csa_007862 [Cucumis sativus])

HSP 1 Score: 500.7 bits (1288), Expect = 1.1e-137
Identity = 263/371 (70.89%), Postives = 307/371 (82.75%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M KISSTF L+FIQKRF+NT+ST TLP  SVSTI+FL+NSCGL S SP+S  +  Q DE+
Sbjct: 1   MSKISSTFLLHFIQKRFLNTISTSTLPLPSVSTIQFLQNSCGLSSGSPTSGGRKLQFDEQ 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           NIQ Y A++G L+SH FEN QIA LVSR+PS+L+SKVSTNLKPKFEFLQEIGF GPLLPK
Sbjct: 61  NIQKYGAVIGFLKSHAFENPQIANLVSRRPSLLQSKVSTNLKPKFEFLQEIGFVGPLLPK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LIL+NP IL  SLDSHLKPSF  LKE++ESDE+V A+I RSSWL TF+ K I+K N D+L
Sbjct: 121 LILANPSILLWSLDSHLKPSFRLLKEMVESDEQVTAAIFRSSWLPTFNFKSIVKPNFDVL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
           VSEGVPS  +A LI  QPR I +K+D +I+VV+ VKELGIEPKA +F+ ALRV SS++DS
Sbjct: 181 VSEGVPSRNLAKLIQVQPRVITQKVDRLIQVVQTVKELGIEPKARLFIRALRVMSSLSDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TW+KKINV+KSLGWSEKEILTAFKK P YL  SEEKMR VADFC NTAKLDPE V+ YP 
Sbjct: 241 TWKKKINVMKSLGWSEKEILTAFKKEPKYLGCSEEKMRDVADFCLNTAKLDPETVLSYPA 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
           LFM ALD +LR RYKV+EVLK KNLLK+KKIAW+LL  E+ FVE  ++KHLDEIPNLMD+
Sbjct: 301 LFMSALD-KLRPRYKVIEVLKVKNLLKNKKIAWLLLEREREFVEKYIVKHLDEIPNLMDI 360

Query: 361 YRGNVAAETSS 372
           YRGNV AE  +
Sbjct: 361 YRGNVEAEAET 370

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-09
Identity = 48/193 (24.87%), Postives = 90/193 (46.63%), Query Frame = 0


Query: 21  VSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDERNIQHYQA-ILGILQSHGFEN 80
           + T  L    +  +E L +    P E  S+  + P I   +++     +L   Q+ G   
Sbjct: 69  ILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALGVPE 128

Query: 81  SQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFD-GPLLPKLILSNPWILSRSLDSHLK 140
           +Q+ K++   P ++   + T L     FL  +G D   ++ K+++ NP+++  S+D  L+
Sbjct: 129 TQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDKRLR 188

Query: 141 PSFFFLKEILESDEKVIAS-IRRSSWLLTFDCKGILKSNIDLLVSEGVPSWRIATLIVTQ 200
           P+  FLK  +   E  I S +     LL  D   ILK N D L   G    +IAT++   
Sbjct: 189 PTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGY 248

Query: 201 PRTIMRKLDTMIE 211
           P+ +++ +   ++
Sbjct: 249 PQILIKSVKNSLQ 261

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy Swiss-Prot
Match: B6TGN4 (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.7e-09
Identity = 63/301 (20.93%), Postives = 130/301 (43.19%), Query Frame = 0


Query: 48  PSSARQNPQIDERN-IQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFE 107
           P   R+ PQ+   + +     ++  LQ      + + +++ R P +L  K+   +     
Sbjct: 153 PDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPTDVPRVLERYPELLGFKLEGTMSTSVA 212

Query: 108 FLQEIGFDGPLLPKLILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLT 167
           +L  IG     +  +I   P +L   +   +KP    L+ I      +   I +  ++L 
Sbjct: 213 YLVGIGVGRRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLG 272

Query: 168 FDCKGILKSNIDLLVSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATM 227
           F  +  +K NI+ LV  GV    +A++++  P  +  +L   +   + + E  I      
Sbjct: 273 FGLQEKVKPNIEALVDIGVRKEALASIVMQYPDVLGLELRDKLVAQQSLFESSILVSRED 332

Query: 228 F---LHALRVRSSMNDSTWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADF 287
           F   L  +    S+  +   K +N L + G+   ++      CP  L  + + MR+  ++
Sbjct: 333 FGRVLERMPQAISLGRAAVLKHVNFLTACGFMLSQVSKMVVACPQLLALNIDIMRMNFEY 392

Query: 288 CFNTAKLDPEVVIFYPKLFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFV 345
             N  + D E ++ +P  F   +++ +R R+   E++  K L  S  +AW+L  ++ +F 
Sbjct: 393 FKNEMERDLEELVEFPAFFTYGIESTVRPRH---EMVSRKGLTCS--LAWLLNCSDAKFD 448

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-07
Identity = 61/301 (20.27%), Postives = 127/301 (42.19%), Query Frame = 0


Query: 48  PSSARQNPQIDERN-IQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFE 107
           P   R+ PQ+   + +     ++  LQ        + +++ R P +L  K+   +     
Sbjct: 162 PDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPHDVPRVLERYPELLGFKLEGTMSTSIA 221

Query: 108 FLQEIGFDGPLLPKLILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLT 167
           +L  IG     +  +I   P +L   +   +KP    L+ I      +   I +  ++L 
Sbjct: 222 YLVGIGVARRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLG 281

Query: 168 FDCKGILKSNIDLLVSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATM 227
           F  +  +K NI+ L+  GV    +A ++   P  +  +L   +   + + E  I   +  
Sbjct: 282 FGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIELRDKLATQQSLFESSILVSSED 341

Query: 228 F---LHALRVRSSMNDSTWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADF 287
           F   +  +    S+  +   K +N L S G+   ++      CP  L  + + M++  ++
Sbjct: 342 FGRVIERMPQAISLGRTAVLKHVNFLTSCGFLLSQVSKMVVACPQLLALNMDIMKMSFEY 401

Query: 288 CFNTAKLDPEVVIFYPKLFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFV 345
             N  + D E ++ +P  F   L++ +R R+   E++  K    S  +AW+L  ++ +F 
Sbjct: 402 FQNEMERDLEELVEFPAFFTYGLESTVRPRH---EMVAKKGFTCS--LAWLLNCSDAKFD 457

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 1.4e-04
Identity = 41/161 (25.47%), Postives = 76/161 (47.20%), Query Frame = 0


Query: 28  SASVSTIEFLKNSCGLPSES-PSSARQNPQIDERNIQH-YQAILGILQSHGFENSQIAKL 87
           S  +  + FL N   +  +  P S  + P++   ++ +  +  L  L++ GF       +
Sbjct: 99  SEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRD--TI 158

Query: 88  VSRQPSVLRSKVSTNLKPKFEFLQE-IGFDGPLLPKLILSNPWILSRSLDSHLKPSFFFL 147
            SR   +L S V   L PK E+L+E +GF    + K+++ +P +L+ S+D++L P   F 
Sbjct: 159 TSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFF 218

Query: 148 KEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLLVSEGV 186
            E +  D K    ++R     +F  +  +K    LL   G+
Sbjct: 219 IEEMRGDVK---ELKRFPQYFSFSLERKIKPRHRLLKEHGI 254

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.2e-04
Identity = 36/142 (25.35%), Postives = 64/142 (45.07%), Query Frame = 0


Query: 22  STPTLPSASVS-----TIEFLKNSCGLPSESPSSARQ-NPQI--DERNIQHYQAILGILQ 81
           +TP+L S SV      TI +L    G+         Q +PQI     +I      + + +
Sbjct: 278 ATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSK 337

Query: 82  SHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPKLILSNPWILSRSL 141
             G     + K+V + P +L   +     P+  FL+ IG     + K++ S   +LS SL
Sbjct: 338 ELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSL 397

Query: 142 DSHLKPSFFFLKEILESDEKVI 156
           + +LKP + +L   L ++  ++
Sbjct: 398 EDNLKPKYMYLVNELNNEVHIL 419

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy TrEMBL
Match: A0A5D3CWA2 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002480 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 1.2e-142
Identity = 270/372 (72.58%), Postives = 309/372 (83.06%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M K SSTF L+FIQKRF+NTVST TLP ASVST+EFL NSCGL S SP+S  +  Q DE+
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTVEFLTNSCGLSSGSPTSNGRKLQFDEK 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           NIQ Y+A++G L+SHG EN QIAKLVSR+P +L+SKVSTNLKPKFEFLQEIGF GPLL K
Sbjct: 61  NIQQYEAVIGFLKSHGLENPQIAKLVSRKPWILQSKVSTNLKPKFEFLQEIGFVGPLLSK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LILSNP I  R+LDS LKPSFFFLKEILESDE+V A+IR S WLL  D KGILKSNID+L
Sbjct: 121 LILSNPRIFYRNLDSQLKPSFFFLKEILESDEQVTAAIRHSPWLLISDFKGILKSNIDVL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
            SEGVPS  IA LIV+  RTIMRK+D MIEVVK VKELGIEPKA MF+HALR+R S++DS
Sbjct: 181 ASEGVPSRNIAKLIVSNSRTIMRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TW+KKINV+KSLGWSE EI TAFKK P +L  SEEKMR VADFCFNTAKLDP  VI  PK
Sbjct: 241 TWKKKINVMKSLGWSETEIFTAFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICPK 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
           +F C++D RL+ RYKVLEVLK KNLLK+  IAW+L+ +E+ FV+  V++HLDEIPNLMD+
Sbjct: 301 IFKCSVDKRLQPRYKVLEVLKVKNLLKNVNIAWVLVQSERAFVKKFVVRHLDEIPNLMDI 360

Query: 361 YRGNVAAETSSV 373
           YRGNV AET SV
Sbjct: 361 YRGNVTAETKSV 372

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy TrEMBL
Match: A0A1S3BEQ3 (uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=3 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 1.2e-142
Identity = 270/372 (72.58%), Postives = 309/372 (83.06%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M K SSTF L+FIQKRF+NTVST TLP ASVST+EFL NSCGL S SP+S  +  Q DE+
Sbjct: 1   MFKFSSTFLLHFIQKRFLNTVSTSTLPLASVSTVEFLTNSCGLSSGSPTSNGRKLQFDEK 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           NIQ Y+A++G L+SHG EN QIAKLVSR+P +L+SKVSTNLKPKFEFLQEIGF GPLL K
Sbjct: 61  NIQQYEAVIGFLKSHGLENPQIAKLVSRKPWILQSKVSTNLKPKFEFLQEIGFVGPLLSK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LILSNP I  R+LDS LKPSFFFLKEILESDE+V A+IR S WLL  D KGILKSNID+L
Sbjct: 121 LILSNPRIFYRNLDSQLKPSFFFLKEILESDEQVTAAIRHSPWLLISDFKGILKSNIDVL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
            SEGVPS  IA LIV+  RTIMRK+D MIEVVK VKELGIEPKA MF+HALR+R S++DS
Sbjct: 181 ASEGVPSRNIAKLIVSNSRTIMRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TW+KKINV+KSLGWSE EI TAFKK P +L  SEEKMR VADFCFNTAKLDP  VI  PK
Sbjct: 241 TWKKKINVMKSLGWSETEIFTAFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICPK 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
           +F C++D RL+ RYKVLEVLK KNLLK+  IAW+L+ +E+ FV+  V++HLDEIPNLMD+
Sbjct: 301 IFKCSVDKRLQPRYKVLEVLKVKNLLKNVNIAWVLVQSERAFVKKFVVRHLDEIPNLMDI 360

Query: 361 YRGNVAAETSSV 373
           YRGNV AET SV
Sbjct: 361 YRGNVTAETKSV 372

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy TrEMBL
Match: A0A5A7SSP1 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003130 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 1.9e-137
Identity = 261/372 (70.16%), Postives = 304/372 (81.72%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M ++SS+F L+FIQ RF+NT+ T TLP +SVSTI+FLKNSCGL SESP SA +  Q DE 
Sbjct: 1   MSRLSSSFLLHFIQNRFLNTIYTSTLPFSSVSTIQFLKNSCGLSSESPYSAARKLQFDEE 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           +IQ Y+A +G L+SHGF+NSQIAKLVS+ PS+L+SKVSTNLKPKFEFLQEIG  GPLLPK
Sbjct: 61  SIQKYEATIGFLKSHGFDNSQIAKLVSKHPSILQSKVSTNLKPKFEFLQEIGLVGPLLPK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LI SNP+IL RSLDSHLKPSFFFLKEILESD +V A+I RS+ LLTFD KGILK N+D+L
Sbjct: 121 LIASNPYILLRSLDSHLKPSFFFLKEILESDVQVTAAICRSARLLTFDFKGILKPNVDVL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
           VSEG+PS  IA +I  QP  IM+++D MI+ VK VKELG+EPKA MF++A+ +R S++DS
Sbjct: 181 VSEGMPSRNIAKMIALQPIAIMQRVDRMIQAVKTVKELGVEPKARMFVYAVLIRLSLSDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
            W  KINVLKSLGWSEKEI  AFKK P YL  SE+KMR VADFCFNTAKLDP  VI YP 
Sbjct: 241 NWTNKINVLKSLGWSEKEIFAAFKKDPNYLGCSEKKMRDVADFCFNTAKLDPGTVISYPV 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
            F  ++D RLR RYKVLEVLK KNLLK+KKIA +LL  EK FVE  V+KHLDEIPNLMD+
Sbjct: 301 FFKSSVDKRLRPRYKVLEVLKVKNLLKNKKIAGVLLQGEKTFVEKYVVKHLDEIPNLMDI 360

Query: 361 YRGNVAAETSSV 373
           YRGNV AET SV
Sbjct: 361 YRGNVEAETKSV 372

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy TrEMBL
Match: A0A6J1J3P9 (transcription termination factor MTERF9, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111482390 PE=3 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 3.7e-136
Identity = 251/372 (67.47%), Postives = 305/372 (81.99%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M KISSTF LYFIQ RF+NTVS+ TLP ASVSTIEFLKNSCGL ++SP SA +  Q DE+
Sbjct: 1   MSKISSTFLLYFIQNRFINTVSSSTLPLASVSTIEFLKNSCGLAADSPFSAGRKLQFDEK 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           + + Y+A+LG L+S+GFENSQIAKL+++QPS+L+S+V  NLKPKFEFL++IGF GPLLPK
Sbjct: 61  SAKKYEAVLGFLKSYGFENSQIAKLIAKQPSILQSRVYNNLKPKFEFLKDIGFVGPLLPK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           +ILSNP IL R LDSHLKPSF F+KE+LESDE+   +IRRSSWLLT   KG+++SN+++L
Sbjct: 121 VILSNPGILLRGLDSHLKPSFCFIKEMLESDEQANVAIRRSSWLLTSSFKGVMQSNVNVL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
           + EGVPS  I+ LI  QPRTIM+K+D M+  VK+VKELGIEP   MF+HALRV  S++D+
Sbjct: 181 LGEGVPSRNISKLIGLQPRTIMQKVDRMVCAVKKVKELGIEPHTRMFVHALRVVVSISDT 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TW+KKINVLKSLGWSEKEILTAFK+ P  L  SEEKMR VADFC NTAKLDPE VI YPK
Sbjct: 241 TWKKKINVLKSLGWSEKEILTAFKRDPYCLACSEEKMRAVADFCLNTAKLDPETVISYPK 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
            FM  LD  LR R+KVLEVLK K L+K++KIAW+L + E+ FV   VLKHLDE+P+LMD+
Sbjct: 301 FFMSGLDKCLRPRFKVLEVLKVKKLIKNRKIAWLLFLGERNFVTNYVLKHLDEVPDLMDI 360

Query: 361 YRGNVAAETSSV 373
           YRGN AAE+  V
Sbjct: 361 YRGNAAAESRPV 372

[Close]

BLAST of CsaV3_5G029200 vs. ExPASy TrEMBL
Match: A0A5D3CZB3 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002900 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.8e-135
Identity = 255/372 (68.55%), Postives = 305/372 (81.99%), Query Frame = 0


Query: 1   MCKISSTFFLYFIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDER 60
           M K+SS+F L+F Q RF+NTVST TLP  SVSTI+FL NSCGL S SP+SA +  Q DE+
Sbjct: 1   MSKLSSSFLLHFFQNRFLNTVSTSTLPLPSVSTIQFLTNSCGLSSGSPTSAGRKLQFDEK 60

Query: 61  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 120
           +IQ Y A++  L+SHGFEN+QIAKLV R+PS+L+SKVS NLKPKFEFLQEIGF GPLLPK
Sbjct: 61  HIQQYGAVIDFLKSHGFENTQIAKLVPREPSILQSKVSNNLKPKFEFLQEIGFVGPLLPK 120

Query: 121 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 180
           LI+S+PW+L  SLDSHLKPS FFL+EILESDEKVIA++ R   LLTF  KGILKSN+D+L
Sbjct: 121 LIISSPWVLRSSLDSHLKPSIFFLREILESDEKVIATVCRFPRLLTFYLKGILKSNVDVL 180

Query: 181 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDS 240
           VSEG+PS  IA +I  QP TIM K+D MI  VK VKELGIEPKA MF++A+ VR SM+DS
Sbjct: 181 VSEGMPSRNIAKMIAMQPLTIMLKVDRMINTVKTVKELGIEPKAGMFVYAVIVRLSMSDS 240

Query: 241 TWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPK 300
           TW+KKINV+KSLGWSEKEI TAFK+ P YL  +EEKMR VADFCFNTAKLDP  +I YPK
Sbjct: 241 TWKKKINVMKSLGWSEKEIFTAFKRYPNYLTCTEEKMRDVADFCFNTAKLDPGALISYPK 300

Query: 301 LFMCALDNRLRRRYKVLEVLKAKNLLKSKKIAWMLLVAEKRFVEICVLKHLDEIPNLMDV 360
           LF  +LD R++ RYKVLEVLK K+LL++ KIA +L   E+ FV+  V+K+LD+IPNLMD+
Sbjct: 301 LFKLSLDKRVQPRYKVLEVLKVKSLLRNVKIARVLAQGEREFVKTYVVKYLDKIPNLMDI 360

Query: 361 YRGNVAAETSSV 373
           YRGN+AAET SV
Sbjct: 361 YRGNIAAETKSV 372

[Close]

BLAST of CsaV3_5G029200 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-48
Identity = 117/365 (32.05%), Postives = 199/365 (54.52%), Query Frame = 0


Query: 9   FLYFIQKRFVNTVSTPTLPSASVS--------TIEFLKNSCGLPSESPSSARQNPQIDER 68
           F++ +Q +F + V+T T  +            T+ +L +SCGL  +S + A +   +D  
Sbjct: 39  FVFSLQTQFSSPVTTLTSKNPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKLLLD-- 98

Query: 69  NIQHYQAILGILQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPK 128
           + +    +L +L+ HGF  +QI+ LV ++P +L +   + L PK  F   IG    LL +
Sbjct: 99  SPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSLLAR 158

Query: 129 LILSNPWILSRSLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLL 188
            + S+P IL+RSL + L PS+ FLK +L+SDEK++A++RR++W+   D    L  NI+ +
Sbjct: 159 TLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVAALRRTTWVFLEDHTKNLVPNINYM 218

Query: 189 VSEGVPSWRIATLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSM-ND 248
              GVP   I  L+   P  +M+K      + K+ +E+G  P+ + F+ A+   S   N 
Sbjct: 219 AETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNK 278

Query: 249 STWEKKINVLKSLGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYP 308
           S W+K   V +  GWSE +I+ AFKK P  ++ SE K+    ++  N   + P  +   P
Sbjct: 279 SIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCP 338

Query: 309 KLFMCALDNRLRRRYKVLEVLKAKNLLKSK-KIAWMLLVAEKRFVEICVLKHLDEIPNLM 364
            +   +L+ R+  R  V +VL +  L+K    +  +L+  EK F+E  V+K+ +E+P LM
Sbjct: 339 VVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELM 398

[Close]

BLAST of CsaV3_5G029200 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-34
Identity = 92/340 (27.06%), Postives = 163/340 (47.94%), Query Frame = 0


Query: 27  PSASVSTIEFLKNSCGLPSESPSSARQNPQIDERNIQHYQAILGILQSHGFENSQIAKLV 86
           P     T+ +L +SCGL  ES  S  +  ++   + +   ++L + + HGF N QI  ++
Sbjct: 52  PCLESFTVSYLVDSCGLSLESAKSNSRFVKL--VSSKKPDSVLALFKDHGFTNDQITSVI 111

Query: 87  SRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPKLILSNPWILSRSLDSHLKPSFFFLKE 146
              P VL       + PK  F   IGF      K+I S+P +LS SL   L P +  LK 
Sbjct: 112 KSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKS 171

Query: 147 ILESDEKVIASIRRSSWLLTFDCKGILKSNIDLLVSEGVPSWRIATLIVTQPRTIMRKLD 206
           IL  +E V+  ++R     +      +   + +    GVP   I  L+   P T   +  
Sbjct: 172 ILVEEESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRER 231

Query: 207 TMIEVVKRVKELGIEPKATMFLHALRVRSSMNDSTWEKKINVLKSLGWSEKEILTAFKKC 266
              EV+ RV   G +PK   F+HA+      ++S  E+K  + +  GWS+++ + A  + 
Sbjct: 232 RFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRF 291

Query: 267 PLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPKLFMCALDNRLRRRYKVLEVLKAKNLL 326
           P  +  S+EK+    ++  N   L    ++  P +   +++ R++ R +V+ +L +K L+
Sbjct: 292 PNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLV 351

Query: 327 KSKKIAW--MLLVAEKRFVEICVLKHLDEIPNLMDVYRGN 365
           K + I +  +L +    F++  VLK+ DE+P L+  +  N
Sbjct: 352 KKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPFTSN 389

[Close]

BLAST of CsaV3_5G029200 vs. TAIR 10
Match: AT3G46950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-27
Identity = 75/284 (26.41%), Postives = 152/284 (53.52%), Query Frame = 0


Query: 12  FIQKRFVNTVSTPTLPSASVSTIEFLKNSCGLPSESPSSARQNPQIDERNIQHYQAILGI 71
           F  K F +T++  + P  S  T+ +L  S GL  +   +  +    +++   +  ++L +
Sbjct: 33  FTTKSFSSTIAKDSSPKGSTFTVSYLVESLGLTKKLAETISKKVTFEDK--VNPDSVLNL 92

Query: 72  LQSHGFENSQIAKLVSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPKLILSNPWILSR 131
           L+S+GF++SQI++++   P +L +    +L+PK +FL+  G     + +++ + P IL +
Sbjct: 93  LRSNGFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGASSSEVIEIVSNVPTILDK 152

Query: 132 SLDSHLKPSFFFLKEILESDEKVIASIRRSSWLLTFDCKGILKSNIDLLVSEGVPSWRIA 191
             +  +   + F+K+I++  + +  S            KG    NI +L   GVP   + 
Sbjct: 153 KGEESVSLYYDFVKDIMQDGKSLCISCPEGK-------KGNRIRNISVLRELGVPQKLLF 212

Query: 192 TLIVTQPRTIMRKLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDSTWEKKINVLKS 251
           +L++++ + +  K +   E +K+V ++G +P  + F+ AL V   M++ T E+K+NV K 
Sbjct: 213 SLLISRYQPVCGK-EKFEESLKKVVDMGFDPAKSKFVEALHVVYEMSEKTIEEKVNVYKR 272

Query: 252 LGWSEKEILTAFKKCPLYLIRSEEKMRVVADFCFNTAKLDPEVV 296
           LG+SE EI   FKK P +L  SE+K+ ++ +       ++ E++
Sbjct: 273 LGFSEAEIWAIFKKWPYFLKFSEKKIILMFETLKKCGLVEEEII 306

[Close]

BLAST of CsaV3_5G029200 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-27
Identity = 93/336 (27.68%), Postives = 174/336 (51.79%), Query Frame = 0


Query: 29  ASVST---IEFLKNSCGLPSESPSSARQNPQIDERNIQHYQAILGILQSHGFENSQIAKL 88
           AS+S    +EFL+++      + + A + P +  ++++  ++++ +L+S+ F ++QI K 
Sbjct: 34  ASISNPAFVEFLRDNGFQKPLAIAIAMRYPNL--KSLEQPRSVIQMLKSYSFSDTQIQKS 93

Query: 89  VSRQPSVLRSKVSTNLKPKFEFLQEIGFDGPLLPKLILSNPWILSRSLDSHLKPSFFFLK 148
           +   P ++   V   L+PK  F ++IGF G  L K +  N  ++  SL   L P+   LK
Sbjct: 94  IRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILK 153

Query: 149 EIL-ESDEKVIASIRRSSW-LLTFDCKGILKSNIDLLVSEGVPSWRIATLIVTQPRTIMR 208
            I+    E +   + R  W LL+ D    L  NI  L + G+   ++A+L+  QPR    
Sbjct: 154 SIVAPKHEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIFNL 213

Query: 209 KLDTMIEVVKRVKELGIEPKATMFLHALRVRSSMNDSTWEKKINVLKSLGWSEKEILTAF 268
             + +   V R  +LG    + M +HA+   SS+++ T+++K+ +  + G+SE EI    
Sbjct: 214 SEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDII 273

Query: 269 KKCPLYLIRSEEKMRVVADFCFNTAKLDPEVVIFYPKLFMCALDNRLRRRYKVLEVLKAK 328
           ++ P  +  SE+K+ +  +F      L+ E +   P +    L+ R+  R KVL++L+ K
Sbjct: 274 RRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREK 333

Query: 329 NLL-----KSKKIAWMLLVAEKRFVEICVLKHLDEI 355
            LL     K K +  ++ + E+ F+E  V++  DEI
Sbjct: 334 GLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEI 367

[Close]

BLAST of CsaV3_5G029200 vs. TAIR 10
Match: AT1G62085.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 116.3 bits (290), Expect = 5.2e-26
Identity = 79/273 (28.94%), Postives = 140/273 (51.28%), Query Frame = 0


Query: 33  TIEFLKNSCGLPSESPSSARQNPQIDERNIQHYQAILGILQSHGFENSQIAKLVSRQPSV 92
           ++ +L +S GLP +   S  +    +++   +  ++L +L+SHGF +SQI+ +++  P +
Sbjct: 57  SVSYLVDSLGLPKKVAESISKKVSFEDKG--NPDSVLSLLRSHGFTDSQISSIITDYPQL 116

Query: 93  LRSKVSTNLKPKFEFLQEIGFDGPLLPKLILSNPWILSRSLDSHLKPSFFFLKEILESDE 152
           L +    ++ PK +FLQ  G     L  ++ + P IL +  D  +   + F+KEI+E+D+
Sbjct: 117 LVADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADK 176

Query: 153 KVIASIRRSSWLLTFDCKGILK-SNIDLLVSEGVPSWRIATLIVTQPRTIMRKLDTMIEV 212
              +   +    L    K   K  N+ +L   GVP   +  L+++  + +  K +   E 
Sbjct: 177 S--SKFEKLCHSLPEGSKQENKIRNVLVLRELGVPQRLLFPLLISDHQPVCGK-ENFEES 236

Query: 213 VKRVKELGIEPKATMFLHALRVRSSMNDSTWEKKINVLKSLGWSEKEILTAFKKCPLYLI 272
           +K+V E+G +P  + F+ ALRV     D T E K+NV KSLG+S  ++   FKKCP +L 
Sbjct: 237 LKKVVEMGFDPTTSKFVKALRVVYRFRDKTIEAKVNVCKSLGFSVGDVWAMFKKCPSFLN 296

Query: 273 RSEEKMRVVADFCFNTAKLDPEVVIFYPKLFMC 305
            SE K+    +       L+ +V+    K   C
Sbjct: 297 FSENKIVQTWETLKKCGLLEDDVLSVLKKFPQC 324

The following BLAST results are available for this feature:

BLAST of CsaV3_5G029200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648625.1	3.1e-206	100.00	hypothetical protein Csa_009427 [Cucumis sativus]	[more]
XP_031741753.1	3.6e-154	77.42	transcription termination factor MTERF5, chloroplastic [Cucumis sativus] >KAE864...	[more]
XP_008446011.1	2.4e-142	72.58	PREDICTED: uncharacterized protein LOC103488865 [Cucumis melo] >KAA0034174.1 tra...	[more]
XP_031740903.1	2.1e-138	69.35	transcription termination factor MTERF5, chloroplastic [Cucumis sativus] >KAE864...	[more]
XP_031741173.1	1.1e-137	70.89	uncharacterized protein LOC101219984 [Cucumis sativus] >KAE8648634.1 hypothetica...	[more]

BLAST of CsaV3_5G029200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	1.1e-09	24.87	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
B6TGN4	9.7e-09	20.93	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]
Q6AUK6	1.8e-07	20.27	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
Q84X53	1.4e-04	25.47	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q9FM80	3.2e-04	25.35	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_5G029200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWA2	1.2e-142	72.58	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BEQ3	1.2e-142	72.58	uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=...	[more]
A0A5A7SSP1	1.9e-137	70.16	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1J3P9	3.7e-136	67.47	transcription termination factor MTERF9, chloroplastic-like OS=Cucurbita maxima ...	[more]
A0A5D3CZB3	1.8e-135	68.55	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of CsaV3_5G029200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	2.2e-48	32.05	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	1.1e-34	27.06	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	2.8e-27	26.41	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	3.6e-27	27.68	Mitochondrial transcription termination factor family protein	[more]
AT1G62085.1	5.2e-26	28.94	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 260..291 e-value: 940.0 score: 4.1 coord: 119..150 e-value: 0.012 score: 24.8 coord: 292..323 e-value: 12.0 score: 14.8 coord: 155..186 e-value: 35.0 score: 13.3 coord: 83..114 e-value: 3.3E-5 score: 33.3 coord: 191..221 e-value: 250.0 score: 8.6 coord: 225..255 e-value: 170.0 score: 9.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 237..342 e-value: 5.1E-14 score: 51.9 coord: 69..277 e-value: 2.2E-33 score: 115.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 21..365
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 132..355 e-value: 7.6E-38 score: 132.2
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 21..365

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G029200.1	CsaV3_5G029200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding