CsaV3_5G028980 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G028980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Photosystem II CP43 reaction center protein
Location	chr5: 24106652 .. 24106954 (-)
RNA-Seq Expression	CsaV3_5G028980
Synteny	CsaV3_5G028980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCAACACAAATATGCATATAATACGAAAGTAATTTTCAAGTGGATTGCCTCCGTTAGATCTAGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAATTCGGAATACGGTAAAGTGGCTCCTGGGTACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCGTTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCTGCACACTTGTATGGTCTGGAGAATCTTACTTGTCTTATAGTTTAGGTGCTTTAGGATATTAG

mRNA sequence

ATGTACCAACACAAATATGCATATAATACGAAAGTAATTTTCAAGTGGATTGCCTCCGTTAGATCTAGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAATTCGGAATACGGTAAAGTGGCTCCTGGGTACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCGTTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCTGCACACTTGTATGGTCTGGAGAATCTTACTTGTCTTATAGTTTAGGTGCTTTAGGATATTAG

Coding sequence (CDS)

ATGTACCAACACAAATATGCATATAATACGAAAGTAATTTTCAAGTGGATTGCCTCCGTTAGATCTAGGCCAAGACGAACTGTTGTAGGGGATTTATTGAAACCATTGAATTCGGAATACGGTAAAGTGGCTCCTGGGTACGATTTGGAAGATATAGTTGGGGGACATGTATGGTTAGGTTCCGTTTGTATACTTGGTGGAATTTGGCATATCTTAACTAAACCCTTTGCATGGGCTCGCTGCACACTTGTATGGTCTGGAGAATCTTACTTGTCTTATAGTTTAGGTGCTTTAGGATATTAG

Protein sequence

MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSGESYLSYSLGALGY*

Homology

[Close]

BLAST of CsaV3_5G028980 vs. NCBI nr
Match: KGN51555.1 (hypothetical protein Csa_007903 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 8.3e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLG 60
           MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLG
Sbjct: 1   MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLG 60

Query: 61  SVCILGGIWHILTKPFAWARCTLVWSGESYLSYSLGALGY 101
           SVCILGGIWHILTKPFAWARCTLVWSGESYLSYSLGALGY
Sbjct: 61  SVCILGGIWHILTKPFAWARCTLVWSGESYLSYSLGALGY 100

[Close]

BLAST of CsaV3_5G028980 vs. NCBI nr
Match: KAG5568868.1 (hypothetical protein H5410_064112 [Solanum commersonii])

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-22
Identity = 52/73 (71.23%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           + G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWARC LVWSG
Sbjct: 78  IFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARCALVWSG 137

Query: 88  ESYLSYSLGALGY 101
           E+YLSYSLGAL +
Sbjct: 138 EAYLSYSLGALAF 150

[Close]

BLAST of CsaV3_5G028980 vs. NCBI nr
Match: YP_010141980.1 (photosystem II CP43 chlorophyll apoprotein [Rubus pileatus] >QQK92225.1 photosystem II CP43 chlorophyll apoprotein [Rubus pileatus])

HSP 1 Score: 112.5 bits (280), Expect = 2.2e-21
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           V G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 VFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGALG 100
           E+YLSYSLGALG
Sbjct: 269 EAYLSYSLGALG 280

[Close]

BLAST of CsaV3_5G028980 vs. NCBI nr
Match: CUR00526.1 (psbC [Acacia anthochaera] >CUR00615.1 psbC [Acacia anthochaera] >CUR02889.1 psbC [Acacia hemiteles] >CUR02980.1 psbC [Acacia hemiteles])

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 27  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWS 86
           T+ G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWS
Sbjct: 196 TIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWS 255

Query: 87  GESYLSYSLGAL 99
           GE+YLSYSLGAL
Sbjct: 256 GEAYLSYSLGAL 267

[Close]

BLAST of CsaV3_5G028980 vs. NCBI nr
Match: YP_009272487.1 (photosystem II CP43 chlorophyll apoprotein [Utricularia reniformis] >AMN14337.1 photosystem II CP43 chlorophyll apoprotein [Utricularia reniformis])

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           +VG LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 IVGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSLGAL
Sbjct: 269 EAYLSYSLGAL 279

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy Swiss-Prot
Match: Q2QD93 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           + G LLK      G +    DLEDIVGGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 IFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSLGAL
Sbjct: 269 EAYLSYSLGAL 279

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy Swiss-Prot
Match: Q09X21 (Photosystem II CP43 reaction center protein OS=Morus indica OX=248361 GN=psbC PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 52/71 (73.24%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           V G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 VFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSLGAL
Sbjct: 269 EAYLSYSLGAL 279

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy Swiss-Prot
Match: Q8S8X7 (Photosystem II CP43 reaction center protein OS=Atropa belladonna OX=33113 GN=psbC PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-23
Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           + G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 IFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSLGAL
Sbjct: 269 EAYLSYSLGAL 279

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy Swiss-Prot
Match: B5LMM0 (Photosystem II CP43 reaction center protein OS=Cicer arietinum OX=3827 GN=psbC PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-23
Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           + G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 IFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSLGAL
Sbjct: 269 EAYLSYSLGAL 279

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy Swiss-Prot
Match: A0A331 (Photosystem II CP43 reaction center protein OS=Coffea arabica OX=13443 GN=psbC PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-23
Identity = 51/71 (71.83%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           + G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 IFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSLGAL
Sbjct: 269 EAYLSYSLGAL 279

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy TrEMBL
Match: A0A0A0KPL5 (Photosystem II CP43 chlorophyll apoprotein OS=Cucumis sativus OX=3659 GN=Csa_5G577700 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 4.0e-53
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLG 60
           MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLG
Sbjct: 1   MYQHKYAYNTKVIFKWIASVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLG 60

Query: 61  SVCILGGIWHILTKPFAWARCTLVWSGESYLSYSLGALGY 101
           SVCILGGIWHILTKPFAWARCTLVWSGESYLSYSLGALGY
Sbjct: 61  SVCILGGIWHILTKPFAWARCTLVWSGESYLSYSLGALGY 100

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy TrEMBL
Match: A0A7T6ZUI3 (Photosystem II CP43 chlorophyll apoprotein OS=Rubus pileatus OX=1813505 GN=psbC PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           V G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 VFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGALG 100
           E+YLSYSLGALG
Sbjct: 269 EAYLSYSLGALG 280

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy TrEMBL
Match: A0A1D0CDU7 (Photosystem II CP43 reaction center protein OS=Acacia hemiteles OX=1120453 GN=psbC PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 27  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWS 86
           T+ G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWS
Sbjct: 196 TIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWS 255

Query: 87  GESYLSYSLGAL 99
           GE+YLSYSLGAL
Sbjct: 256 GEAYLSYSLGAL 267

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy TrEMBL
Match: A0A1D0C6B6 (Photosystem II CP43 reaction center protein OS=Acacia anthochaera OX=205064 GN=psbC PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 27  TVVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWS 86
           T+ G LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWS
Sbjct: 196 TIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWS 255

Query: 87  GESYLSYSLGAL 99
           GE+YLSYSLGAL
Sbjct: 256 GEAYLSYSLGAL 267

[Close]

BLAST of CsaV3_5G028980 vs. ExPASy TrEMBL
Match: A0A1C7D4S6 (Photosystem II CP43 reaction center protein OS=Utricularia reniformis OX=192314 GN=psbC PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.8e-21
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           +VG LLK      G +    DLEDI+GGHVWLGS+CILGGIWHILTKPFAWAR  LVWSG
Sbjct: 209 IVGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSLGAL
Sbjct: 269 EAYLSYSLGAL 279

[Close]

BLAST of CsaV3_5G028980 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-23
Identity = 49/71 (69.01%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 28  VVGDLLKPLNSEYGKVAPGYDLEDIVGGHVWLGSVCILGGIWHILTKPFAWARCTLVWSG 87
           + G LLK      G +    DLEDI+GGHVWLGS+CI GGIWHILTKPFAWAR  LVWSG
Sbjct: 209 IFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKPFAWARRALVWSG 268

Query: 88  ESYLSYSLGAL 99
           E+YLSYSL AL
Sbjct: 269 EAYLSYSLAAL 279

[Close]

BLAST of CsaV3_5G028980 vs. TAIR 10
Match: ATCG00710.1 (photosystem II reaction center protein H )

HSP 1 Score: 52.0 bits (123), Expect = 3.3e-07
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 19 SVRSRPRRTVVGDLLKPLNSEYGKVAPGYDLEDIVG 55
          S RS PR T VG LLKPLNSEYGKVAPG+    ++G
Sbjct: 9  SSRSGPRSTTVGKLLKPLNSEYGKVAPGWGTTPLMG 44

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51555.1	8.3e-53	100.00	hypothetical protein Csa_007903 [Cucumis sativus]	[more]
KAG5568868.1	2.6e-22	71.23	hypothetical protein H5410_064112 [Solanum commersonii]	[more]
YP_010141980.1	2.2e-21	73.61	photosystem II CP43 chlorophyll apoprotein [Rubus pileatus] >QQK92225.1 photosys...	[more]
CUR00526.1	3.7e-21	72.22	psbC [Acacia anthochaera] >CUR00615.1 psbC [Acacia anthochaera] >CUR02889.1 psbC...	[more]
YP_009272487.1	3.7e-21	73.24	photosystem II CP43 chlorophyll apoprotein [Utricularia reniformis] >AMN14337.1 ...	[more]

BLAST of CsaV3_5G028980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD93	1.4e-23	73.24	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
Q09X21	1.4e-23	73.24	Photosystem II CP43 reaction center protein OS=Morus indica OX=248361 GN=psbC PE...	[more]
Q8S8X7	1.9e-23	71.83	Photosystem II CP43 reaction center protein OS=Atropa belladonna OX=33113 GN=psb...	[more]
B5LMM0	1.9e-23	71.83	Photosystem II CP43 reaction center protein OS=Cicer arietinum OX=3827 GN=psbC P...	[more]
A0A331	1.9e-23	71.83	Photosystem II CP43 reaction center protein OS=Coffea arabica OX=13443 GN=psbC P...	[more]

BLAST of CsaV3_5G028980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPL5	4.0e-53	100.00	Photosystem II CP43 chlorophyll apoprotein OS=Cucumis sativus OX=3659 GN=Csa_5G5...	[more]
A0A7T6ZUI3	1.1e-21	73.61	Photosystem II CP43 chlorophyll apoprotein OS=Rubus pileatus OX=1813505 GN=psbC ...	[more]
A0A1D0CDU7	1.8e-21	72.22	Photosystem II CP43 reaction center protein OS=Acacia hemiteles OX=1120453 GN=ps...	[more]
A0A1D0C6B6	1.8e-21	72.22	Photosystem II CP43 reaction center protein OS=Acacia anthochaera OX=205064 GN=p...	[more]
A0A1C7D4S6	1.8e-21	73.24	Photosystem II CP43 reaction center protein OS=Utricularia reniformis OX=192314 ...	[more]

BLAST of CsaV3_5G028980 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	1.9e-23	69.01	photosystem II reaction center protein C	[more]
ATCG00710.1	3.3e-07	66.67	photosystem II reaction center protein H	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036863	Photosystem II reaction centre protein H superfamily	GENE3D	1.20.5.880	Photosystem II reaction center protein H	coord: 10..68 e-value: 6.6E-14 score: 53.3
IPR001056	Photosystem II reaction centre protein H	PFAM	PF00737	PsbH	coord: 26..59 e-value: 5.8E-10 score: 38.7
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 46..98 e-value: 3.2E-16 score: 59.1
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 43..98
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 43..98
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 37..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028980.1	CsaV3_5G028980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0042301	phosphate ion binding