CsaV3_5G028970 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G028970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transcription factor CYCLOIDEA
Location	chr5: 24098801 .. 24099703 (+)
RNA-Seq Expression	CsaV3_5G028970
Synteny	CsaV3_5G028970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATCATCAACAACAACAACATCAAGAGGATCAAATCCTCATCAACTCATATGATGATCATGATTTTCATTATTTCCCACATCCTTTTCTTGATGACGACGACCTATTTTTAAGCCATTTTCTATCACAACAACAACAATTCTTCGAACAACGAGATCAGCAACTTGACGAAACGACGAAAAAGATGAAGAAGAAGAAGAAATTGTGTGGAAGTAGTAGTAGTAGAAAAAATGGGAGCAACTCTACAAAGAGAAGAGGGAAGAAGGATAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTTGATCTTCAAGACATGCTAGGCTTTGACAAAGCTAGTAAAACTATAGAGTGGCTTCTTCTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAGCCTACTTCTTTAAGTACTCAAATTCTGGCCAATCAAGTGAGGTTGTGTCAGAGATTAATGATAACAATGGTGTTTTTAATGTTGCTGCTTCTAATCTATATCAAGAACAAGATCAAGAAGATGTTGCGTTTACGGGCGGTTTTAAAGACAAGATCAAAAGCAGGACGTTACGAACCGTTGCGAGAGAGGCGAGGGATAGGGCGAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTTACTACCAAACCCTCCTATTACTTCTTCCATTTCTCAACATTTTGATCATCTCTCAGGTAATAACAATATTAGTAGTAGTAGTAATAATAATAATAATACCTATCTTGATTATTATCCTACATTTTCTTGCCCTAGTACTTCCATTTTCCTTCCTTCTCCACTTCCCTTACCCTACTCTTTTACTGATTCCACATTACTTAAATTGCCCTAA

mRNA sequence

ATGGATGATCATCAACAACAACAACATCAAGAGGATCAAATCCTCATCAACTCATATGATGATCATGATTTTCATTATTTCCCACATCCTTTTCTTGATGACGACGACCTATTTTTAAGCCATTTTCTATCACAACAACAACAATTCTTCGAACAACGAGATCAGCAACTTGACGAAACGACGAAAAAGATGAAGAAGAAGAAGAAATTGTGTGGAAGTAGTAGTAGTAGAAAAAATGGGAGCAACTCTACAAAGAGAAGAGGGAAGAAGGATAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTTGATCTTCAAGACATGCTAGGCTTTGACAAAGCTAGTAAAACTATAGAGTGGCTTCTTCTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAGCCTACTTCTTTAAGTACTCAAATTCTGGCCAATCAAGTGAGGTTGTGTCAGAGATTAATGATAACAATGGTGTTTTTAATGTTGCTGCTTCTAATCTATATCAAGAACAAGATCAAGAAGATGTTGCGTTTACGGGCGGTTTTAAAGACAAGATCAAAAGCAGGACGTTACGAACCGTTGCGAGAGAGGCGAGGGATAGGGCGAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTTACTACCAAACCCTCCTATTACTTCTTCCATTTCTCAACATTTTGATCATCTCTCAGGTAATAACAATATTAGTAGTAGTAGTAATAATAATAATAATACCTATCTTGATTATTATCCTACATTTTCTTGCCCTAGTACTTCCATTTTCCTTCCTTCTCCACTTCCCTTACCCTACTCTTTTACTGATTCCACATTACTTAAATTGCCCTAA

Coding sequence (CDS)

ATGGATGATCATCAACAACAACAACATCAAGAGGATCAAATCCTCATCAACTCATATGATGATCATGATTTTCATTATTTCCCACATCCTTTTCTTGATGACGACGACCTATTTTTAAGCCATTTTCTATCACAACAACAACAATTCTTCGAACAACGAGATCAGCAACTTGACGAAACGACGAAAAAGATGAAGAAGAAGAAGAAATTGTGTGGAAGTAGTAGTAGTAGAAAAAATGGGAGCAACTCTACAAAGAGAAGAGGGAAGAAGGATAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTTGATCTTCAAGACATGCTAGGCTTTGACAAAGCTAGTAAAACTATAGAGTGGCTTCTTCTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAGCCTACTTCTTTAAGTACTCAAATTCTGGCCAATCAAGTGAGGTTGTGTCAGAGATTAATGATAACAATGGTGTTTTTAATGTTGCTGCTTCTAATCTATATCAAGAACAAGATCAAGAAGATGTTGCGTTTACGGGCGGTTTTAAAGACAAGATCAAAAGCAGGACGTTACGAACCGTTGCGAGAGAGGCGAGGGATAGGGCGAGAGCTAGGGCAAGACAAAGAACACTCTTGAAAAATACTTTACTACCAAACCCTCCTATTACTTCTTCCATTTCTCAACATTTTGATCATCTCTCAGGTAATAACAATATTAGTAGTAGTAGTAATAATAATAATAATACCTATCTTGATTATTATCCTACATTTTCTTGCCCTAGTACTTCCATTTTCCTTCCTTCTCCACTTCCCTTACCCTACTCTTTTACTGATTCCACATTACTTAAATTGCCCTAA

Protein sequence

MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDETTKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP*

Homology

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BLAST of CsaV3_5G028970 vs. NCBI nr
Match: XP_011656248.2 (transcription factor TCP12 [Cucumis sativus])

HSP 1 Score: 570.1 bits (1468), Expect = 1.1e-158
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET
Sbjct: 34  MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 93

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
           TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 94  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 153

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS
Sbjct: 154 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 213

Query: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240
           NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS
Sbjct: 214 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 273

Query: 241 ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP 300
           ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP
Sbjct: 274 ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP 333

[Close]

BLAST of CsaV3_5G028970 vs. NCBI nr
Match: KGN51554.1 (hypothetical protein Csa_008919 [Cucumis sativus])

HSP 1 Score: 570.1 bits (1468), Expect = 1.1e-158
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET
Sbjct: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
           TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS
Sbjct: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180

Query: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240
           NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS
Sbjct: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240

Query: 241 ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP 300
           ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP
Sbjct: 241 ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP 300

[Close]

BLAST of CsaV3_5G028970 vs. NCBI nr
Match: TYK00281.1 (transcription factor CYCLOIDEA [Cucumis melo var. makuwa])

HSP 1 Score: 528.5 bits (1360), Expect = 3.8e-146
Identity = 284/305 (93.11%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQH+E+QILINSYDDHD HYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET
Sbjct: 1   MDDHQQQQHRENQILINSYDDHDLHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
           TKKMKKKKKLCGSSSSR NGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 61  TKKMKKKKKLCGSSSSRINGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGV NVAAS
Sbjct: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVVNVAAS 180

Query: 181 N-LYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITS 240
           N L Q+QDQEDVAFTGGFKDKIKSRTLRT +REARDRARARARQRTLLKNTLLPNPPITS
Sbjct: 181 NHLDQQQDQEDVAFTGGFKDKIKSRTLRTGSREARDRARARARQRTLLKNTLLPNPPITS 240

Query: 241 SISQHFDHLSGNNNISS----SSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDST 300
           SISQHFDHLSGNNNISS    ++NNNNNTYLDYYPTFSCPS+S+FLPSPL LPYSF+DST
Sbjct: 241 SISQHFDHLSGNNNISSISSNNNNNNNNTYLDYYPTFSCPSSSVFLPSPLYLPYSFSDST 300

[Close]

BLAST of CsaV3_5G028970 vs. NCBI nr
Match: XP_016903718.1 (PREDICTED: transcription factor CYCLOIDEA [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 2.1e-64
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 107 MRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVS 166
           MRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVS
Sbjct: 1   MRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVS 60

Query: 167 EINDNNGVFNVAASN-LYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRT 226
           EINDNNGV NVAASN L Q+QDQEDVAFTGGFKDKIKSRTLRT +REARDRARARARQRT
Sbjct: 61  EINDNNGVVNVAASNHLDQQQDQEDVAFTGGFKDKIKSRTLRTGSREARDRARARARQRT 120

Query: 227 LLKNTLLPNPPITSSISQHFDHLS 250
           LLKNTLLPNPPITSSISQHFDHLS
Sbjct: 121 LLKNTLLPNPPITSSISQHFDHLS 144

[Close]

BLAST of CsaV3_5G028970 vs. NCBI nr
Match: XP_022974210.1 (transcription factor CYCLOIDEA-like [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 1.0e-42
Identity = 138/255 (54.12%), Postives = 162/255 (63.53%), Query Frame = 0


Query: 3   DHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFF------EQRDQQ 62
           +H   QHQE       ++++ + +FPHPFLD DDLFL+H LS QQ F       EQ  + 
Sbjct: 16  NHIALQHQE------QHEENLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEQEQEH 75

Query: 63  LDETTKK---------MKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRM 122
             + TK+         +KKKKK C  S +RKNGS S K+ GKKDRHSKIYTAQGPRDRR+
Sbjct: 76  EHDQTKQNSEKPRIEVVKKKKKKC--SGNRKNGS-SRKKTGKKDRHSKIYTAQGPRDRRI 135

Query: 123 RLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQ------- 182
           RLSLQIARKFFDLQDMLGFDKAS TIEWLL NS SAIKDL+ +     +NSG        
Sbjct: 136 RLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSL---ANNSGHRYGSVCC 195

Query: 183 -SSEVVSE-INDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRAR 234
            S+E VSE I DNNG    A          ++ AF    K K +SR LR V RE+RDRAR
Sbjct: 196 GSTEAVSEMIRDNNGGGGAA----------KEAAFMATPKHK-QSRALRRVGRESRDRAR 247

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy Swiss-Prot
Match: Q9SBV9 (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum cirrhigerum OX=102600 GN=CYC PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-23
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 84  TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 143
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 74  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 133

Query: 144 IKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKS 203
           +K+L Q+   K ++S       S  +D   V +V + N+      + +      K+ + S
Sbjct: 134 VKELVQSKSTKSNSS-------SPCDDCEEVVSVESENVTDHSKGKSLKANNKCKEAMDS 193

Query: 204 RTLRTVAREARDRARARARQRT 226
              +  A+E+R +ARARAR+RT
Sbjct: 194 H--QAAAKESRAKARARARERT 206

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy Swiss-Prot
Match: Q9SBV6 (Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum linkianum OX=102601 GN=CYC PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-23
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 84  TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 143
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 74  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 133

Query: 144 IKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKS 203
           IK+L Q+   K ++S       S  +D   V +V + N+      + +      K+ + S
Sbjct: 134 IKELVQSKSTKSNSS-------SPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMDS 193

Query: 204 RTLRTVAREARDRARARARQRT 226
              +  A+E+R +ARARAR+RT
Sbjct: 194 H--QAAAKESRAKARARARERT 206

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy Swiss-Prot
Match: O49250 (Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.5e-23
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 84  TKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSA 143
           TK+  KKDRHSKIYT+QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S +A
Sbjct: 82  TKQAVKKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKTA 141

Query: 144 IKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKS 203
           IK+L Q+   K ++S       S  +D   V +V + N+      + +      K+ + S
Sbjct: 142 IKELVQSKSTKSNSS-------SPCDDCEEVVSVDSENVTDHSKGKSLKANNKCKEAMDS 201

Query: 204 RTLRTVAREARDRARARARQRT 226
              +  A+E+R +ARARAR+RT
Sbjct: 202 H--QAAAKESRAKARARARERT 214

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy Swiss-Prot
Match: A0AQW4 (Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-21
Identity = 89/220 (40.45%), Postives = 119/220 (54.09%), Query Frame = 0


Query: 17  NSYDDHDFHYFP--HPFLD--DDDLFLSHFLSQQQQFFEQRDQQLDETTKKMKKKKK--- 76
           NS+  +    FP    FL+  D+   ++ FL QQQ       +   +  KK++ KKK   
Sbjct: 35  NSHHHYSSPSFPFSSDFLESFDESFLINQFLLQQQDVAANVVESPWKFCKKLELKKKNEK 94

Query: 77  -LCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 136
            + GS+S       + K   K+DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDK
Sbjct: 95  CVDGSTSQEVQWRRTVK---KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 154

Query: 137 ASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQ 196
           ASKTIEWL   S ++IK LK+      S  G   E +                   E+++
Sbjct: 155 ASKTIEWLFSKSKTSIKQLKER--VAASEGGGKDEHLQ----------------VDEKEK 214

Query: 197 EDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLK 229
           ++       K + K+       +E+R+RAR RAR+RT+ K
Sbjct: 215 DETLKLRVSKRRTKTMESSFKTKESRERARKRARERTMAK 233

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy Swiss-Prot
Match: Q9SNW8 (Transcription factor DICHOTOMA OS=Antirrhinum majus OX=4151 GN=DICH PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-20
Identity = 69/142 (48.59%), Postives = 87/142 (61.27%), Query Frame = 0


Query: 85  KRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAI 144
           K   KKDRHSKI   QGPRDRR+RLS+ IARKFFDLQ+MLGFDK SKT++WLL  S  AI
Sbjct: 83  KHTPKKDRHSKINRPQGPRDRRVRLSIGIARKFFDLQEMLGFDKPSKTLDWLLTKSKEAI 142

Query: 145 KDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIK-S 204
           K+L Q+   K + S   SE   E         V +++L      +  A  G   +K K  
Sbjct: 143 KELVQSKSSKSNISNSPSECDQE---------VLSADLPYIGSSKGKAAVGLNSNKCKGG 202

Query: 205 RTLRTVAREARDRARARARQRT 226
           R    +A+E+R +ARARAR+RT
Sbjct: 203 RDAVDLAKESRAKARARARERT 215

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy TrEMBL
Match: A0A0A0KRR2 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G577450 PE=4 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 5.5e-159
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET
Sbjct: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
           TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS
Sbjct: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180

Query: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240
           NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS
Sbjct: 181 NLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSS 240

Query: 241 ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP 300
           ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP
Sbjct: 241 ISQHFDHLSGNNNISSSSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDSTLLKLP 300

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy TrEMBL
Match: A0A5D3BKD8 (Transcription factor CYCLOIDEA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00230 PE=4 SV=1)

HSP 1 Score: 528.5 bits (1360), Expect = 1.8e-146
Identity = 284/305 (93.11%), Postives = 294/305 (96.39%), Query Frame = 0


Query: 1   MDDHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60
           MDDHQQQQH+E+QILINSYDDHD HYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET
Sbjct: 1   MDDHQQQQHRENQILINSYDDHDLHYFPHPFLDDDDLFLSHFLSQQQQFFEQRDQQLDET 60

Query: 61  TKKMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120
           TKKMKKKKKLCGSSSSR NGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL
Sbjct: 61  TKKMKKKKKLCGSSSSRINGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDL 120

Query: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAAS 180
           QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGV NVAAS
Sbjct: 121 QDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVVNVAAS 180

Query: 181 N-LYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITS 240
           N L Q+QDQEDVAFTGGFKDKIKSRTLRT +REARDRARARARQRTLLKNTLLPNPPITS
Sbjct: 181 NHLDQQQDQEDVAFTGGFKDKIKSRTLRTGSREARDRARARARQRTLLKNTLLPNPPITS 240

Query: 241 SISQHFDHLSGNNNISS----SSNNNNNTYLDYYPTFSCPSTSIFLPSPLPLPYSFTDST 300
           SISQHFDHLSGNNNISS    ++NNNNNTYLDYYPTFSCPS+S+FLPSPL LPYSF+DST
Sbjct: 241 SISQHFDHLSGNNNISSISSNNNNNNNNTYLDYYPTFSCPSSSVFLPSPLYLPYSFSDST 300

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy TrEMBL
Match: A0A1S4E661 (transcription factor CYCLOIDEA OS=Cucumis melo OX=3656 GN=LOC103483044 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 107 MRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVS 166
           MRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVS
Sbjct: 1   MRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVS 60

Query: 167 EINDNNGVFNVAASN-LYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRT 226
           EINDNNGV NVAASN L Q+QDQEDVAFTGGFKDKIKSRTLRT +REARDRARARARQRT
Sbjct: 61  EINDNNGVVNVAASNHLDQQQDQEDVAFTGGFKDKIKSRTLRTGSREARDRARARARQRT 120

Query: 227 LLKNTLLPNPPITSSISQHFDHLS 250
           LLKNTLLPNPPITSSISQHFDHLS
Sbjct: 121 LLKNTLLPNPPITSSISQHFDHLS 144

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy TrEMBL
Match: A0A6J1IDD5 (transcription factor CYCLOIDEA-like OS=Cucurbita maxima OX=3661 GN=LOC111472832 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.0e-43
Identity = 138/255 (54.12%), Postives = 162/255 (63.53%), Query Frame = 0


Query: 3   DHQQQQHQEDQILINSYDDHDFHYFPHPFLDDDDLFLSHFLSQQQQFF------EQRDQQ 62
           +H   QHQE       ++++ + +FPHPFLD DDLFL+H LS QQ F       EQ  + 
Sbjct: 16  NHIALQHQE------QHEENLYLHFPHPFLDHDDLFLTHILSSQQFFIGADCWGEQEQEH 75

Query: 63  LDETTKK---------MKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRM 122
             + TK+         +KKKKK C  S +RKNGS S K+ GKKDRHSKIYTAQGPRDRR+
Sbjct: 76  EHDQTKQNSEKPRIEVVKKKKKKC--SGNRKNGS-SRKKTGKKDRHSKIYTAQGPRDRRI 135

Query: 123 RLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQ------- 182
           RLSLQIARKFFDLQDMLGFDKAS TIEWLL NS SAIKDL+ +     +NSG        
Sbjct: 136 RLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSL---ANNSGHRYGSVCC 195

Query: 183 -SSEVVSE-INDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRAR 234
            S+E VSE I DNNG    A          ++ AF    K K +SR LR V RE+RDRAR
Sbjct: 196 GSTEAVSEMIRDNNGGGGAA----------KEAAFMATPKHK-QSRALRRVGRESRDRAR 247

[Close]

BLAST of CsaV3_5G028970 vs. ExPASy TrEMBL
Match: A0A6J1EPH0 (transcription factor TCP12-like OS=Cucurbita moschata OX=3662 GN=LOC111436600 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.6e-41
Identity = 138/255 (54.12%), Postives = 158/255 (61.96%), Query Frame = 0


Query: 3   DHQQQQHQEDQILINSYDDHDFH-YFPHPFLDDDDLFLSHFLSQQQQFF------EQRDQ 62
           +H   QHQE         + + H +FPHPFLD DDLFL+H LS Q  F       EQ  +
Sbjct: 15  NHIALQHQEQH-------ERNLHLHFPHPFLDQDDLFLTHILSSQHFFIGADCWGEQEQE 74

Query: 63  QLDETTK--------KMKKKKKLCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRM 122
           Q  + TK        ++ KKKK C  S +RKNGS S K+ GKKDRHSKIYTAQGPRDRRM
Sbjct: 75  QHHDQTKQNSEKPRIEVVKKKKKC--SGNRKNGS-SRKKTGKKDRHSKIYTAQGPRDRRM 134

Query: 123 RLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQ------- 182
           RLSLQIARKFFDLQDMLGFDKAS TIEWLL NS SAIKDL+ +     +NSG        
Sbjct: 135 RLSLQIARKFFDLQDMLGFDKASNTIEWLLSNSTSAIKDLQHSL---ANNSGHRYGSVCC 194

Query: 183 -SSEVVSE-INDNNGVFNVAASNLYQEQDQEDVAFTGGFKDKIKSRTLRTVAREARDRAR 234
            S+E VSE I DNNG    A          ++ AF    K K +SR LR V RE+RDRAR
Sbjct: 195 GSTEAVSEMIRDNNGGGGAA----------KEAAFMATPKHK-QSRALRRVGRESRDRAR 245

[Close]

BLAST of CsaV3_5G028970 vs. TAIR 10
Match: AT1G68800.1 (TCP domain protein 12 )

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-22
Identity = 89/220 (40.45%), Postives = 119/220 (54.09%), Query Frame = 0


Query: 17  NSYDDHDFHYFP--HPFLD--DDDLFLSHFLSQQQQFFEQRDQQLDETTKKMKKKKK--- 76
           NS+  +    FP    FL+  D+   ++ FL QQQ       +   +  KK++ KKK   
Sbjct: 35  NSHHHYSSPSFPFSSDFLESFDESFLINQFLLQQQDVAANVVESPWKFCKKLELKKKNEK 94

Query: 77  -LCGSSSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 136
            + GS+S       + K   K+DRHSKI TAQGPRDRRMRLSLQIARKFFDLQDMLGFDK
Sbjct: 95  CVDGSTSQEVQWRRTVK---KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDK 154

Query: 137 ASKTIEWLLLNSNSAIKDLKQAYFFKYSNSGQSSEVVSEINDNNGVFNVAASNLYQEQDQ 196
           ASKTIEWL   S ++IK LK+      S  G   E +                   E+++
Sbjct: 155 ASKTIEWLFSKSKTSIKQLKER--VAASEGGGKDEHLQ----------------VDEKEK 214

Query: 197 EDVAFTGGFKDKIKSRTLRTVAREARDRARARARQRTLLK 229
           ++       K + K+       +E+R+RAR RAR+RT+ K
Sbjct: 215 DETLKLRVSKRRTKTMESSFKTKESRERARKRARERTMAK 233

[Close]

BLAST of CsaV3_5G028970 vs. TAIR 10
Match: AT1G67260.1 (TCP family transcription factor )

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-19
Identity = 75/171 (43.86%), Postives = 96/171 (56.14%), Query Frame = 0


Query: 81  SNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNS 140
           S   K+  KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKASKT++WLL  S
Sbjct: 79  SKEIKKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKS 138

Query: 141 NSAIKDLKQAYFFK-----YSNSGQSSEVVSE-INDNNG--VFNVAASNLYQEQDQEDVA 200
             AIK++ QA         + N G   E   E   D+NG   F    S  Y E++    A
Sbjct: 139 RKAIKEVVQAKNLNNDDEDFGNIGGDVEQEEEKEEDDNGDKSFVYGLSPGYGEEEVVCEA 198

Query: 201 FTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQ 244
              G + K KS      ++    +AR +A++RT  +     NP   S I+Q
Sbjct: 199 TKAGIRKK-KSELRNISSKGLGAKARGKAKERT-KEMMAYDNPETASDITQ 247

[Close]

BLAST of CsaV3_5G028970 vs. TAIR 10
Match: AT1G67260.2 (TCP family transcription factor )

HSP 1 Score: 94.4 bits (233), Expect = 1.7e-19
Identity = 75/171 (43.86%), Postives = 96/171 (56.14%), Query Frame = 0


Query: 81  SNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNS 140
           S   K+  KKDRHSKI TAQG RDRR+RLS+ IAR+FFDLQDMLGFDKASKT++WLL  S
Sbjct: 79  SKEIKKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKS 138

Query: 141 NSAIKDLKQAYFFK-----YSNSGQSSEVVSE-INDNNG--VFNVAASNLYQEQDQEDVA 200
             AIK++ QA         + N G   E   E   D+NG   F    S  Y E++    A
Sbjct: 139 RKAIKEVVQAKNLNNDDEDFGNIGGDVEQEEEKEEDDNGDKSFVYGLSPGYGEEEVVCEA 198

Query: 201 FTGGFKDKIKSRTLRTVAREARDRARARARQRTLLKNTLLPNPPITSSISQ 244
              G + K KS      ++    +AR +A++RT  +     NP   S I+Q
Sbjct: 199 TKAGIRKK-KSELRNISSKGLGAKARGKAKERT-KEMMAYDNPETASDITQ 247

[Close]

BLAST of CsaV3_5G028970 vs. TAIR 10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 )

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-15
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 80  GSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLN 139
           G +  +  G+KDRHSK+ TA+GPRDRR+RLS   A +F+D+QD LGFD+ SK ++WL+  
Sbjct: 40  GGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITK 99

Query: 140 SNSAIKDLKQ 150
           + SAI DL Q
Sbjct: 100 AKSAIDDLAQ 109

[Close]

BLAST of CsaV3_5G028970 vs. TAIR 10
Match: AT3G18550.1 (TCP family transcription factor )

HSP 1 Score: 77.0 bits (188), Expect = 2.8e-14
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 74  SSSRKNGSNSTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTI 133
           S+S+       K+  + DRHSKI TA+G RDRRMRLSL +A++ F LQDMLGFDKASKT+
Sbjct: 133 STSQDPKMKKAKKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTV 192

Query: 134 EWLLLNSNSAI 145
           EWLL  +   I
Sbjct: 193 EWLLTQAKPEI 203

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656248.2	1.1e-158	100.00	transcription factor TCP12 [Cucumis sativus]	[more]
KGN51554.1	1.1e-158	100.00	hypothetical protein Csa_008919 [Cucumis sativus]	[more]
TYK00281.1	3.8e-146	93.11	transcription factor CYCLOIDEA [Cucumis melo var. makuwa]	[more]
XP_016903718.1	2.1e-64	95.83	PREDICTED: transcription factor CYCLOIDEA [Cucumis melo]	[more]
XP_022974210.1	1.0e-42	54.12	transcription factor CYCLOIDEA-like [Cucurbita maxima]	[more]

BLAST of CsaV3_5G028970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SBV9	2.5e-23	47.89	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum cirrhigerum OX=102600 G...	[more]
Q9SBV6	2.5e-23	48.59	Transcription factor CYCLOIDEA (Fragment) OS=Antirrhinum linkianum OX=102601 GN=...	[more]
O49250	2.5e-23	48.59	Transcription factor CYCLOIDEA OS=Antirrhinum majus OX=4151 GN=CYC PE=1 SV=1	[more]
A0AQW4	2.3e-21	40.45	Transcription factor TCP12 OS=Arabidopsis thaliana OX=3702 GN=TCP12 PE=2 SV=1	[more]
Q9SNW8	2.6e-20	48.59	Transcription factor DICHOTOMA OS=Antirrhinum majus OX=4151 GN=DICH PE=2 SV=1	[more]

BLAST of CsaV3_5G028970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR2	5.5e-159	100.00	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G577450 PE=4 SV...	[more]
A0A5D3BKD8	1.8e-146	93.11	Transcription factor CYCLOIDEA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4E661	1.0e-64	95.83	transcription factor CYCLOIDEA OS=Cucumis melo OX=3656 GN=LOC103483044 PE=4 SV=1	[more]
A0A6J1IDD5	5.0e-43	54.12	transcription factor CYCLOIDEA-like OS=Cucurbita maxima OX=3661 GN=LOC111472832 ...	[more]
A0A6J1EPH0	1.6e-41	54.12	transcription factor TCP12-like OS=Cucurbita moschata OX=3662 GN=LOC111436600 PE...	[more]

BLAST of CsaV3_5G028970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68800.1	1.7e-22	40.45	TCP domain protein 12	[more]
AT1G67260.1	1.7e-19	43.86	TCP family transcription factor	[more]
AT1G67260.2	1.7e-19	43.86	TCP family transcription factor	[more]
AT1G53230.1	3.3e-15	54.29	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]
AT3G18550.1	2.8e-14	57.75	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 88..229 e-value: 3.6E-40 score: 138.0
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 89..147 score: 35.487366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..101
None	No IPR available	PANTHER	PTHR31072:SF118	TRANSCRIPTION FACTOR TCP12	coord: 29..264
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 29..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028970.1	CsaV3_5G028970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity