CsaV3_5G028390 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G028390
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	CLAVATA3/ESR (CLE)-related protein 17-like
Location	chr5: 23581219 .. 23582177 (-)
RNA-Seq Expression	CsaV3_5G028390
Synteny	CsaV3_5G028390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTATAAAAAAAATATATTGAAATTTTGTTATAAAGATTTTCAAACATTAGGCTTAAATTTTAAGATCATGTGGTTAAACCCATAAGACACGCACCCAAATCTTCTCTATGTTTTTCTTTTTTTCTTTTTTTGATCTTTTTCTCACTTTCTTTCATTTTCTCTCCTTCTCCTCTTTTTTTTCTCGGGAAACAAACGCCTCCACCGCCCCTCCGCCACCCTTAAAAACCCGCCTCCGTTTCACGGCGGCGGAATGACACCATCAACCGGAACCTCCAGTCGCCACCGCGTCAGACCCACCACCGCCCTTTTCCTCTTCTTCTGGGTCCTTCTCATTTCAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCCCCGCCATCAAGGAAACTAGCCCGGTTCTCCACGGCGTTCTTTCACCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTTTCGACCGCCATCAGTCCGCCGCCGTTGCTGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAAGTCCATCAATTTTTGTTTTTTTGTTTATTTTTTTTTTAATATTTTAGAAAATGGGTAGATTAAGATCTTTGTGTTGAACAACTTTTTTTTTCTTCTTTTTTTGTGGAGAAGAATTAGAGCATTAAAGAATTAGCGTTCATAGAGAAATTAATTAAGTTTGAAGGCTAATTATTTGATGCTCTTGTTTCTTTCTATCTACTACTAATGTAATGTTCTTTTTTTCTTTTTTCTTTTTTTTGTACGTTTTGTAACAAAAATTAAATTGTCTTTGAATTTAATTTTCTGTGTATTAATCAATTCTTCTTCTTCTTCTTCTTCTTTCTTCTTTCTTCTTTATTCTCCTTAACCACTGCAAAAACACTGTATCAGAGAATTTATTCCAAAAATAATAATACTAATAATAAAT

mRNA sequence

ATGACACCATCAACCGGAACCTCCAGTCGCCACCGCGTCAGACCCACCACCGCCCTTTTCCTCTTCTTCTGGGTCCTTCTCATTTCAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCCCCGCCATCAAGGAAACTAGCCCGGTTCTCCACGGCGTTCTTTCACCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTTTCGACCGCCATCAGTCCGCCGCCGTTGCTGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Coding sequence (CDS)

ATGACACCATCAACCGGAACCTCCAGTCGCCACCGCGTCAGACCCACCACCGCCCTTTTCCTCTTCTTCTGGGTCCTTCTCATTTCAGCTCCGACTACCCTCTGTCTTCACCTTCCCCCGCCGCCCCCGCCATCAAGGAAACTAGCCCGGTTCTCCACGGCGTTCTTTCACCATGCACCACCTACAACTACAACTTCCCCAGCTGAGCTTTTCGACCGCCATCAGTCCGCCGCCGTTGCTGCCGCGTACGGCGAAAACAAGCGGTTAATTCATACGGGTCCGAATCCTCTTCACAACTAA

Protein sequence

MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN*

Homology

[Close]

BLAST of CsaV3_5G028390 vs. NCBI nr
Match: XP_011656246.1 (CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical protein Csa_008181 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60
           MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP
Sbjct: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of CsaV3_5G028390 vs. NCBI nr
Match: XP_008437694.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325.1 CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60
           MTP TGTSSRHR RPTTAL LFFWVLLI APTTLCLHLPPPPPPSRKLARFSTA F HAP
Sbjct: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAEL DR Q    A+AY E+KRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CsaV3_5G028390 vs. NCBI nr
Match: KAG7016766.1 (hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 68/104 (65.38%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 1   MTPSTGTSSRH--RVRPTTALFLFFWVLLISAP--TTLCLHLPPPPPPSRKLARFSTAFF 60
           M   T T SRH      TTAL LF WVLLI AP  TTLC  LPP P   RKL RFSTA F
Sbjct: 1   MRVRTVTCSRHGAGATTTTALVLFLWVLLILAPATTTLCFQLPPSP---RKLVRFSTASF 60

Query: 61  HHAPPTTTTSPAELFDRHQSAA-VAAAYGENKRLIHTGPNPLHN 100
            HAPP   TSPAEL  R QS+A  AAAYG+ KRLIHTGPNPLHN
Sbjct: 61  RHAPP--ATSPAELLHRRQSSAGAAAAYGDEKRLIHTGPNPLHN 99

[Close]

BLAST of CsaV3_5G028390 vs. NCBI nr
Match: KAG6601877.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 4.5e-19
Identity = 58/95 (61.05%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 7   TSSRHRVRPTT--ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTT 66
           T + H    TT  A  LFFWVLLI  P TLCLHLPPPPP SRKL  FSTA   HA    T
Sbjct: 2   TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----T 61

Query: 67  TSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           + P  L  R  SAA AA Y ++KRLIHTGPNPLHN
Sbjct: 62  SPPELLHHRPTSAAAAAVYTDDKRLIHTGPNPLHN 92

[Close]

BLAST of CsaV3_5G028390 vs. NCBI nr
Match: KAG7032578.1 (hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 58/97 (59.79%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 7   TSSRHRVRPTT--ALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAPPTTT 66
           T + H    TT  A  LFFWVLLI  P TLCLHLPPPPP SRKL  FSTA   HA     
Sbjct: 2   TLTTHASAATTAYAFLLFFWVLLIFPPPTLCLHLPPPPPTSRKLVHFSTASLSHA----- 61

Query: 67  TSPAELFDRH--QSAAVAAAYGENKRLIHTGPNPLHN 100
           TSP EL       +AA AA Y ++KRLIHTGPNPLHN
Sbjct: 62  TSPPELLHHRPTSAAAAAAVYTDDKRLIHTGPNPLHN 93

[Close]

BLAST of CsaV3_5G028390 vs. ExPASy Swiss-Prot
Match: Q8L9H6 (CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-08
Identity = 41/105 (39.05%), Postives = 48/105 (45.71%), Query Frame = 0


Query: 6   GTSSRHRVRPTTALFLFFWVLLISAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R  V  T   FLFF+V  +S    L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  FFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
            F          P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CsaV3_5G028390 vs. ExPASy TrEMBL
Match: A0A0A0KSY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.3e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60
           MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP
Sbjct: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60

Query: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 99

[Close]

BLAST of CsaV3_5G028390 vs. ExPASy TrEMBL
Match: A0A5A7TY55 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00340 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.2e-39
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60
           MTP TGTSSRHR RPTTAL LFFWVLLI APTTLCLHLPPPPPPSRKLARFSTA F HAP
Sbjct: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAEL DR Q    A+AY E+KRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CsaV3_5G028390 vs. ExPASy TrEMBL
Match: A0A1S3AUM2 (CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC103483038 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.2e-39
Identity = 84/99 (84.85%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1   MTPSTGTSSRHRVRPTTALFLFFWVLLISAPTTLCLHLPPPPPPSRKLARFSTAFFHHAP 60
           MTP TGTSSRHR RPTTAL LFFWVLLI APTTLCLHLPPPPPPSRKLARFSTA F HAP
Sbjct: 1   MTPQTGTSSRHRARPTTALLLFFWVLLILAPTTLCLHLPPPPPPSRKLARFSTASFRHAP 60

Query: 61  PTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
           PTTTTSPAEL DR Q    A+AY E+KRLIHTGPNPLHN
Sbjct: 61  PTTTTSPAELLDRRQP---ASAYREDKRLIHTGPNPLHN 96

[Close]

BLAST of CsaV3_5G028390 vs. ExPASy TrEMBL
Match: A0A178WDE5 (CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 41/105 (39.05%), Postives = 48/105 (45.71%), Query Frame = 0


Query: 6   GTSSRHRVRPTTALFLFFWVLLISAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R  V  T   FLFF+V  +S    L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  FFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
            F          P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CsaV3_5G028390 vs. ExPASy TrEMBL
Match: A0A6A4P6C9 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr16g0385091 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-04
Identity = 35/110 (31.82%), Postives = 47/110 (42.73%), Query Frame = 0


Query: 7   TSSRHRVRPTTALFLFFWVLLISAPTTLCLHL-----------------PPPPPPSRKLA 66
           T    R+    A   F WV+L+ A  +L L +                 P P P  ++  
Sbjct: 10  TRENRRLSWVKAAIFFLWVILVFALISLFLSIHNESTSRKCRRNLTIKPPSPKPFPQREH 69

Query: 67  RFSTAFFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
            F   FFH +  + TT+   +     S      YG+ KRLIHTGPNPLHN
Sbjct: 70  SFRKTFFHASSSSITTTQERVMSTDISDQNDPLYGDEKRLIHTGPNPLHN 119

[Close]

BLAST of CsaV3_5G028390 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-09
Identity = 41/105 (39.05%), Postives = 48/105 (45.71%), Query Frame = 0


Query: 6   GTSSRHRVRPTTALFLFFWVLLISAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R  V  T   FLFF+V  +S    L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  FFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
            F          P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CsaV3_5G028390 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-09
Identity = 41/105 (39.05%), Postives = 48/105 (45.71%), Query Frame = 0


Query: 6   GTSSRHRVRPTTALFLFFWVLLISAPTTLC---------LHL--PPPPPPSRKLARFSTA 65
           G   R  V  T   FLFF+V  +S    L          LHL   PPPPP RK  R+STA
Sbjct: 12  GKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSASVGYSRLHLVASPPPPPPRKALRYSTA 71

Query: 66  FFHHAPPTTTTSPAELFDRHQSAAVAAAYGENKRLIHTGPNPLHN 100
            F          P    D          YG++KR++HTGPNPLHN
Sbjct: 72  PFR--------GPLSRDD---------IYGDDKRVVHTGPNPLHN 99

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656246.1	1.1e-49	100.00	CLAVATA3/ESR (CLE)-related protein 17 [Cucumis sativus] >KGN51492.1 hypothetical...	[more]
XP_008437694.1	1.5e-38	84.85	PREDICTED: CLAVATA3/ESR (CLE)-related protein 17-like [Cucumis melo] >KAA0046325...	[more]
KAG7016766.1	1.1e-20	65.38	hypothetical protein SDJN02_21876, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601877.1	4.5e-19	61.05	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7032578.1	2.2e-18	59.79	hypothetical protein SDJN02_06627, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_5G028390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9H6	6.4e-08	39.05	CLAVATA3/ESR (CLE)-related protein 17 OS=Arabidopsis thaliana OX=3702 GN=CLE17 P...	[more]

BLAST of CsaV3_5G028390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSY2	5.3e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570370 PE=4 SV=1	[more]
A0A5A7TY55	7.2e-39	84.85	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3AUM2	7.2e-39	84.85	CLAVATA3/ESR (CLE)-related protein 17-like OS=Cucumis melo OX=3656 GN=LOC1034830...	[more]
A0A178WDE5	2.4e-05	39.05	CLE17 OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g65080 PE=4 SV=1	[more]
A0A6A4P6C9	7.6e-04	31.82	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr16g0385091 PE=4 SV=1	[more]

BLAST of CsaV3_5G028390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70895.1	4.5e-09	39.05	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	4.5e-09	39.05	CLAVATA3/ESR-RELATED 17	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 4..99
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 4..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028390.1	CsaV3_5G028390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development