CsaV3_5G028140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G028140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Histone-lysine N-methyltransferase setd3-like
Location	chr5: 23255824 .. 23256039 (+)
RNA-Seq Expression	CsaV3_5G028140
Synteny	CsaV3_5G028140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTACTCCGCGGCGGCCCTCGATTCCGATTCCGAGGTTTCTCACCTTCCCATTCACAGCCAGGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCCTCTCTTCAGCAATCCGACATGAACACTCACCTTCTTCTTCGAGGGATCTCCATTTCCAAGCCACGCTCTCGCTCCCCCTTAGGCCTTCCCTCCGACACCTCTATTTCT

mRNA sequence

ATGGACTACTCCGCGGCGGCCCTCGATTCCGATTCCGAGGTTTCTCACCTTCCCATTCACAGCCAGGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCCTCTCTTCAGCAATCCGACATGAACACTCACCTTCTTCTTCGAGGGATCTCCATTTCCAAGCCACGCTCTCGCTCCCCCTTAGGCCTTCCCTCCGACACCTCTATTTCT

Coding sequence (CDS)

ATGGACTACTCCGCGGCGGCCCTCGATTCCGATTCCGAGGTTTCTCACCTTCCCATTCACAGCCAGGTTGAGAAGATCAAGAAGGAGATTGAGAAGATCAAGCATCCCTCTCTTCAGCAATCCGACATGAACACTCACCTTCTTCTTCGAGGGATCTCCATTTCCAAGCCACGCTCTCGCTCCCCCTTAGGCCTTCCCTCCGACACCTCTATTTCT

Protein sequence

MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGLPSDTSIS

Homology

[Close]

BLAST of CsaV3_5G028140 vs. NCBI nr
Match: KAE8648597.1 (hypothetical protein Csa_008169, partial [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGLPSDTSIS
Sbjct: 61 SPLGLPSDTSIS 72

[Close]

BLAST of CsaV3_5G028140 vs. NCBI nr
Match: XP_011655448.1 (uncharacterized protein LOC105435535 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGLPSDTSIS
Sbjct: 61 SPLGLPSDTSIS 72

[Close]

BLAST of CsaV3_5G028140 vs. NCBI nr
Match: XP_016903705.1 (PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 uncharacterized protein E6C27_scaffold149G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYS AALDSDSEVS +PIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGLPSDT IS
Sbjct: 61 SPLGLPSDTPIS 72

[Close]

BLAST of CsaV3_5G028140 vs. NCBI nr
Match: XP_038875254.1 (uncharacterized protein LOC120067758 [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-20
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 6  AALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 65
          AA DSDS+VS LPIHSQV+KIKKEIEKIKHPSLQQS+MNTHLLLRGISISKPRSRSPLGL
Sbjct: 8  AAGDSDSDVSQLPIHSQVQKIKKEIEKIKHPSLQQSEMNTHLLLRGISISKPRSRSPLGL 67

Query: 66 PSDTSIS 73
           ++  IS
Sbjct: 68 AAERPIS 74

[Close]

BLAST of CsaV3_5G028140 vs. NCBI nr
Match: XP_022146403.1 (uncharacterized protein LOC111015628 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          M+ +A   DSD++V   P+H QV KIK+EIEKIKHPSLQQS+M THLLLRGISISK RSR
Sbjct: 1  MEKTAGDGDSDAQV---PVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGL ++  IS
Sbjct: 61 SPLGLAAERPIS 69

[Close]

BLAST of CsaV3_5G028140 vs. ExPASy TrEMBL
Match: A0A0A0KPB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.9e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGLPSDTSIS
Sbjct: 61 SPLGLPSDTSIS 72

[Close]

BLAST of CsaV3_5G028140 vs. ExPASy TrEMBL
Match: A0A5A7TYE7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00850 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYS AALDSDSEVS +PIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGLPSDT IS
Sbjct: 61 SPLGLPSDTPIS 72

[Close]

BLAST of CsaV3_5G028140 vs. ExPASy TrEMBL
Match: A0A1S4E6T1 (uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-27
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          MDYS AALDSDSEVS +PIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR
Sbjct: 1  MDYSTAALDSDSEVSQVPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGLPSDT IS
Sbjct: 61 SPLGLPSDTPIS 72

[Close]

BLAST of CsaV3_5G028140 vs. ExPASy TrEMBL
Match: A0A6J1CYH4 (uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015628 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          M+ +A   DSD++V   P+H QV KIK+EIEKIKHPSLQQS+M THLLLRGISISK RSR
Sbjct: 1  MEKTAGDGDSDAQV---PVHIQVVKIKREIEKIKHPSLQQSEMTTHLLLRGISISKSRSR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGL ++  IS
Sbjct: 61 SPLGLAAERPIS 69

[Close]

BLAST of CsaV3_5G028140 vs. ExPASy TrEMBL
Match: A0A6J1E1V2 (uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430025 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.8e-14
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 1  MDYSAAALDSDSEVSHLPIHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSR 60
          M+ S A  D+  + S  P+H QV KIK+EIEKIKHPSLQQS+M+THLLLR +SISKPR R
Sbjct: 1  MENSTAVADAGLD-SQAPVHIQVVKIKREIEKIKHPSLQQSEMSTHLLLRDMSISKPRPR 60

Query: 61 SPLGLPSDTSIS 73
          SPLGL ++ SIS
Sbjct: 61 SPLGLAAERSIS 71

[Close]

BLAST of CsaV3_5G028140 vs. TAIR 10
Match: AT1G67920.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 19 IHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGLPSDTSIS 73
          IHSQVEKIKKE EKI+ PSLQQ +M    +L  I   + RSRSPLGL  + SIS
Sbjct: 15 IHSQVEKIKKEFEKIRQPSLQQPEMRR--VLSEIK-RRQRSRSPLGL-GERSIS 64

[Close]

BLAST of CsaV3_5G028140 vs. TAIR 10
Match: AT1G24600.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 7.5e-06
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 19 IHSQVEKIKKEIEKIKHPSLQQSDMNTHLLLRGISISKPRSRSPLGL 66
          IHSQV KIK+E EKI+HPSL+Q +M   L+ R I +   RSRSPLGL
Sbjct: 18 IHSQVVKIKREFEKIQHPSLKQPEM--PLVFREI-MGPRRSRSPLGL 61

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648597.1	2.0e-29	100.00	hypothetical protein Csa_008169, partial [Cucumis sativus]	[more]
XP_011655448.1	2.0e-29	100.00	uncharacterized protein LOC105435535 [Cucumis sativus]	[more]
XP_016903705.1	4.2e-27	94.44	PREDICTED: uncharacterized protein LOC103504534 [Cucumis melo] >KAA0046371.1 unc...	[more]
XP_038875254.1	1.7e-20	85.07	uncharacterized protein LOC120067758 [Benincasa hispida]	[more]
XP_022146403.1	3.2e-14	68.06	uncharacterized protein LOC111015628 [Momordica charantia]	[more]

BLAST of CsaV3_5G028140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G028140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPB9	9.9e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G561250 PE=4 SV=1	[more]
A0A5A7TYE7	2.1e-27	94.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4E6T1	2.1e-27	94.44	uncharacterized protein LOC103504534 OS=Cucumis melo OX=3656 GN=LOC103504534 PE=...	[more]
A0A6J1CYH4	1.5e-14	68.06	uncharacterized protein LOC111015628 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1E1V2	5.8e-14	65.28	uncharacterized protein LOC111430025 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsaV3_5G028140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67920.1	3.4e-06	61.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G24600.1	7.5e-06	61.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..72
None	No IPR available	PANTHER	PTHR34780:SF2	BNAA07G38580D PROTEIN	coord: 7..72
None	No IPR available	PANTHER	PTHR34780	OS08G0427800 PROTEIN	coord: 7..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028140.1	CsaV3_5G028140.1	mRNA