CsaV3_5G028080 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G028080
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 23195193 .. 23198804 (-)
RNA-Seq ExpressionCsaV3_5G028080
SyntenyCsaV3_5G028080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAATAAGGAAAGAAAATTCATGATCAAGGCTCATTTGAGAGAGAAAAATAATGGTTTTCTAGGTAATGGGGAATCAATTTCTTAAGAATCTTTGACAGATAAAAACAAGTCAAAAGCCTATAAATTAACTTTACGACTGAGGATAGGTCGACTTCTTTTGTCCTTCATTCACACTAGGGAGGCGGAGTTCTCATTCTCAGTGTCGACATATGTTGTGGCAAATATTGACCCGTTTAAAGATAGCCTATTCTCAATCCTTATCGTGCATATGTTCACTAATTTTATGTTTTTATACAAAGTATAAAGTAGACTTTGATACGAACTCAACAATACAAAAATCACCTAATTTGGAGTTAAAACGAAGAAGAACGGACAAATTAAACATAAGGGGCATTTTGGTAAATATTGAAGAAGATTGGCACGTGAGTCAACTACACGCGCACGTGCCACTCGGACGTCACGCGTTTGAACCTTACCAGACGCAATTTAAATCCGGATTATGAAAGAAGAAAACAACGTCATTTTGCGTTATCCGCGCACGCATCCCCAGATGACAGTTTGAATCCCCCTCACGCACAAATGAAGCAATCTTATTTGAATCTTCAATCCGTGTCTTCCCATCTCATCCGATCTCCGCGCCCCTTAGCCACCTGAGTTCGACTCCCACCTAACGCAAAACCATTTATTTTCTTCCATTTTCAATGACAAATTCTTGCCAAATTTTCGAAACTTCTCCATTTTTCGTGATTTTTCCCCATTTGCTATAATCCCCCAATTTTCTCTACAAATATCCCTTTTAACTCCTAATTTCATATAGAATTCAATTCAATTCACTATTCCCTCTAAAATTACTCCCAATTTCTTCCAAATTCCAAATTCTCTACCCCATTCTGTATTATTTGGATCTTCAACAAATTTTCCGGAATTATTGAAGATGCAAGACTAATTTCTTGAGGTAATTTGGGCTTATATGATTCTAATCTTTGAGAATTTCATTACTTTGATTTTTTTTTTACTATAATTAGGGTTTGATTAATCTTTGATTTCGATGTAATATTTGTTAGAATCCTCAATCAATTGTATCAAGAATTAGATCTGTGATGCAATTTTATTAATTTTTGTAATTTGATTCTTGATCTTTGATTTTTTGGTTTAATCTTTGTAAGCAATTTACCCTAAGTATATCAATTAGTGTACGACTAATTGAATTACTTGTTTCTACACAAAAATTCTCTTAATTCTTGATTTTGTCTCTCCCATTTCTGGAATTGTTTGATGCTTTAGTCAATTCTTGGAATTAAATTGCATACTTTTTTGGTGCACACATTAATTCTCTTTTAATTCCTTGGATGCAAAGTTATGATTGATCTATCTTGTAATTTTCTTTGAAGAACAATTAAGAGTTTAGTTAAGATTGCAAAAATTAAACTAATCTCTATGAAATTCATCCATTTTCTTGAATTTTGATTCAAAATTCTTCCAAGATCAAGCAACTTGATCTTGTAAGAAATCTTGAATAAAAAATCTCCTCTTAGTTATGCATGATTCAACTTCCTTTAGTTTCTTTGATTCAATGATAAAATTAGATCCATGCCTAAACCCATTCCCCACTTCCCTTCTTGGAATTCAATCTTTAATATCCATTTTTGTGAATTGTATTGCAAACTAAATTCCTCTTTTCATTCTCCCTTCTAATTTTCCCAAAAATTGTTTCCAATGCTTTTCTTTTACTTTTGTTACTAATCTCATTCTTCTCAAGCATTACATTCAAGAAAACGTCTATCTTACACTCTCTTGGATTCGATACCCGTGCTACCTATCTACGGTAAAAATCAAGGGTAAACTACAAATAATTTTTAGGCCAAAGATTTCAGAAGTAGCCGCCCTTGTTCTTGCAGCAGAGGTTCAAACAGAGAGACCTACTAAAATAGTGGCAGTTGCTTTCCTTCTTGTATATTATTCATAAGAGAGTCTACGAATTACGAGTATAATCCCATTAGTAGATATGGAGAAGCTTTCCAAGAGTAGGACTAGCCTCCAGTTAGAACTCAAAATTCTAAGTCGGAAAGGTGCTAAGCTGCTAGATTGCCCAGGTCATAAAAACCTTTTGGGGTAGTCTCAAATGAGTTCCATCCAGAGCTATCAGAGTTGGGGCGATCACGACTGTTTAGAATATGCTTGACCTAGGGAGACTACCCATGGAGTAGAGCAAAGCAGCTAACTCGAATTGATTGACCGGATCAGATGCGCTTAAGAGGCAGAAGAATCAGAACAAGAAAATGACTCACATAAAAAAAAGTAGGCTAGCAAGAACTTTGTATTAATAGTTGTAGAGGTTAGACCTTCTCAGAACTCTGATTTGGGGTCATGAGCTATGCTGCTTAGTTGTAGAGGTTAGCCCTAGCCTAAAGCTAGAAGAATGAGAAGGTCCAAAAACAAAGGCTCTGACTTTGAAAAGAAAAGTCTCGGATCGTTGAAGGGGAAGCAAGAACTATTCTCCTAAAGTGGGGATTTCCTCTAAGAAGACTGATAACTTCAATAAGCACTCTTTCTTAAGTTCAGTACTATTCTTATCCTACATTGAATGAATAAGAGGAAGCAAGCTTCTTTACTGAAAGCAAGAAGAGCCATCAATAGTCAAAGAAAGGTCCAGACGCCATAAGACAAGAATATTCTTGGTCCATATTCCGACTGAGGAACTAGATTGTTATGGTGGAGAAGAAGAAGAAAAGACAGGGATATTGTAAGAAGTCATGATTCCTATTACTACCTGAGGACTGAAAAGAAAGCCTATCCCAGATCCAAGACGAAGGACCAGTCTTGCAATATTCTTTGCCCCTCCTTTCGCATAATCTATTCAACGCGCATGTTTGTCCTTCGGACCCATCTGCCTTGCCTCTTTGCAATATTCTTTGCACCTCTTCTTTTTTGAGAGGTGCGAAGTCTTTGCCTCTTTTCCTTTTAAGAAAGTTTAGGAAGAAATCCTCGACCACTCGCGCAATAGAAAGCTCGACACCCACCTGGAAAGGAATCTTCTTAGATGTCCCACATACTTTCTTGGAGGAAGACTGACTTTGGACCTAGGCTTTCTTTCTTCTATGTTCTCTGTTCAGGATCGATCAAGTGGGATTTTTGTATTCTTTCAAGAATAGATATCCGATGACGAGGCCTCAGTTTCATAAGTAGGATCACATACGGATTTTTGGGAAGGAGTGGGGATAAATCCAAGTTAATAGAGAACCGCCCCCCTAATCCCAACTTATAGGTAAGATAGAACCCTTGGTTGTATTTTTTCCTTTGAATTAAGCTAATAAGATGATGAACAAGGTGAAAATAATATTGACGATCATCTGCAATGAACCTCTCCTAGGTGATCTTCCAGAAAGAAGAACTGAAACTTCCTCTTTTCTAGGAACTGGTGGGACTATCAATATTCTTTGACCCTGGTCTTGATTCTTTTTCTCTTTTGAAAGATGAGAGGTGGGAAAGCGTAAACGAGGTCCCTTGGGTCACTGCCCGCTTTGAATGGAGAGATGGACGCACGAGTGATTCTAGGCCCGATCATGCCCCCGCAGACATACCATATCGTATTACTTTCTTATGA

mRNA sequence

ATGGAAGATAATAAGGAAAGAAAATTCATGATCAAGGCTCATTTGAGAGAGAAAAATAATGGTTTTCTAGAGAGTCTACGAATTACGAGTATAATCCCATTAGTAGATATGGAGAAGCTTTCCAAGAGTAGGACTAGCCTCCAGTTAGAACTCAAAATTCTAAGTCGGAAAGGTGCTAAGCTGCTAGATTGCCCAGACCTTCTCAGAACTCTGATTTGGGGTCATGAGCTATGCTGCTTAGTTGTAGAGGAAGAAATCCTCGACCACTCGCGCAATAGAAAGCTCGACACCCACCTGGAAAGGAATCTTCTTAGATGTCCCACATACTTTCTTGGAGGAAGACTGACTTTGGACCTAGGCTTTCTTTCTTCTATGTTCTCTGTTCAGGATCGATCAAGTGGGATTTTTGAACTGGTGGGACTATCAATATTCTTTGACCCTGGTCTTGATTCTTTTTCTCTTTTGAAAGATGAGAGGTGGGAAAGCGTAAACGAGGTCCCTTGGGTCACTGCCCGCTTTGAATGGAGAGATGGACGCACGAGTGATTCTAGGCCCGATCATGCCCCCGCAGACATACCATATCGTATTACTTTCTTATGA

Coding sequence (CDS)

ATGGAAGATAATAAGGAAAGAAAATTCATGATCAAGGCTCATTTGAGAGAGAAAAATAATGGTTTTCTAGAGAGTCTACGAATTACGAGTATAATCCCATTAGTAGATATGGAGAAGCTTTCCAAGAGTAGGACTAGCCTCCAGTTAGAACTCAAAATTCTAAGTCGGAAAGGTGCTAAGCTGCTAGATTGCCCAGACCTTCTCAGAACTCTGATTTGGGGTCATGAGCTATGCTGCTTAGTTGTAGAGGAAGAAATCCTCGACCACTCGCGCAATAGAAAGCTCGACACCCACCTGGAAAGGAATCTTCTTAGATGTCCCACATACTTTCTTGGAGGAAGACTGACTTTGGACCTAGGCTTTCTTTCTTCTATGTTCTCTGTTCAGGATCGATCAAGTGGGATTTTTGAACTGGTGGGACTATCAATATTCTTTGACCCTGGTCTTGATTCTTTTTCTCTTTTGAAAGATGAGAGGTGGGAAAGCGTAAACGAGGTCCCTTGGGTCACTGCCCGCTTTGAATGGAGAGATGGACGCACGAGTGATTCTAGGCCCGATCATGCCCCCGCAGACATACCATATCGTATTACTTTCTTATGA

Protein sequence

MEDNKERKFMIKAHLREKNNGFLESLRITSIIPLVDMEKLSKSRTSLQLELKILSRKGAKLLDCPDLLRTLIWGHELCCLVVEEEILDHSRNRKLDTHLERNLLRCPTYFLGGRLTLDLGFLSSMFSVQDRSSGIFELVGLSIFFDPGLDSFSLLKDERWESVNEVPWVTARFEWRDGRTSDSRPDHAPADIPYRITFL*
Homology
[Close]
BLAST of CsaV3_5G028080 vs. NCBI nr
Match: KAE8648595.1 (hypothetical protein Csa_008653 [Cucumis sativus])

HSP 1 Score: 404.4 bits (1038), Expect = 5.5e-109
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0 

Query: 1   MEDNKERKFMIKAHLREKNNGFLESLRITSIIPLVDMEKLSKSRTSLQLELKILSRKGAK 60
           MEDNKERKFMIKAHLREKNNGFLESLRITSIIPLVDMEKLSKSRTSLQLELKILSRKGAK
Sbjct: 1   MEDNKERKFMIKAHLREKNNGFLESLRITSIIPLVDMEKLSKSRTSLQLELKILSRKGAK 60

Query: 61  LLDCPDLLRTLIWGHELCCLVVEEEILDHSRNRKLDTHLERNLLRCPTYFLGGRLTLDLG 120
           LLDCPDLLRTLIWGHELCCLVVEEEILDHSRNRKLDTHLERNLLRCPTYFLGGRLTLDLG
Sbjct: 61  LLDCPDLLRTLIWGHELCCLVVEEEILDHSRNRKLDTHLERNLLRCPTYFLGGRLTLDLG 120

Query: 121 FLSSMFSVQDRSSGIFELVGLSIFFDPGLDSFSLLKDERWESVNEVPWVTARFEWRDGRT 180
           FLSSMFSVQDRSSGIFELVGLSIFFDPGLDSFSLLKDERWESVNEVPWVTARFEWRDGRT
Sbjct: 121 FLSSMFSVQDRSSGIFELVGLSIFFDPGLDSFSLLKDERWESVNEVPWVTARFEWRDGRT 180

Query: 181 SDSRPDHAPADIPYRITFL 200
           SDSRPDHAPADIPYRITFL
Sbjct: 181 SDSRPDHAPADIPYRITFL 199

The following BLAST results are available for this feature:
BLAST of CsaV3_5G028080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648595.15.5e-109100.00hypothetical protein Csa_008653 [Cucumis sativus][more]
BLAST of CsaV3_5G028080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G028080 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G028080.1CsaV3_5G028080.1mRNA