CsaV3_5G028030 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G028030
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 23189387 .. 23190025 (-)
RNA-Seq Expression	CsaV3_5G028030
Synteny	CsaV3_5G028030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGATTCATTCTTCAAAATTCTTTGAACCAGAGCTTGATTTTTCAAGAACTGCTGAAAGAAAAGCCACTTAAGAAAGACAAGATCCGCGCACCAAGATCCTCAACCTCTCCCACTGGGGACAACGGGCCGAAACAGGGACCTCTGGTCGGGTCCAGCCAGGTTCTTCGGGGAATGAGTCTCACTCTCTTTCCGAAGGAGAGCTCGAGCTAAGAAGTTGACCTTCTTTAGGAGGGGACTAAAGCTTGATCATTCCTAGCTAGCCCGCGCCCAGCCTTAATGTGGGATCTTAGAACAAAGCGCTTCTGATCTGGGGTCCGCGTAGGAATAGGTTTCTAGATCTATAACCTATTTTCTCCTCAAAGAGTTGATGAGCATCAAAAACTTGGCTATTTCCCTATTACAGGAAAAGTGGATTTTCTATACTTTTCTGAGAGATAGATAATCAAGATTTTTGGAGTCCCTCTTTTTCATTCAAAGTGAGAGCTGGAATGGAAGAAAAAGAAGAAAAGACGAAGGCAGAACCTACTAAAATACTAAAATCCACTTAAGGCGCAAAGAATATTGCGGGAGGCAAGGCGCAAAGAATATTGCGAAAGCCTAGCGAACGAGAAAAAGGAAGGAATTGCATTTTGA

mRNA sequence

ATGAACGGATTCATTCTTCAAAATTCTTTGAACCAGAGCTTGATTTTTCAAGAACTGCTGAAAGAAAAGCCACTTAAGAAAGACAAGATCCGCGCACCAAGATCCTCAACCTCTCCCACTGGGGACAACGGGCCGAAACAGGGACCTCTGGTCGGGTCCAGCCAGGCGCAAAGAATATTGCGGGAGGCAAGGCGCAAAGAATATTGCGAAAGCCTAGCGAACGAGAAAAAGGAAGGAATTGCATTTTGA

Coding sequence (CDS)

ATGAACGGATTCATTCTTCAAAATTCTTTGAACCAGAGCTTGATTTTTCAAGAACTGCTGAAAGAAAAGCCACTTAAGAAAGACAAGATCCGCGCACCAAGATCCTCAACCTCTCCCACTGGGGACAACGGGCCGAAACAGGGACCTCTGGTCGGGTCCAGCCAGGCGCAAAGAATATTGCGGGAGGCAAGGCGCAAAGAATATTGCGAAAGCCTAGCGAACGAGAAAAAGGAAGGAATTGCATTTTGA

Protein sequence

MNGFILQNSLNQSLIFQELLKEKPLKKDKIRAPRSSTSPTGDNGPKQGPLVGSSQAQRILREARRKEYCESLANEKKEGIAF*

Homology

[Close]

BLAST of CsaV3_5G028030 vs. NCBI nr
Match: KAE8648590.1 (hypothetical protein Csa_008839 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.8e-36
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MNGFILQNSLNQSLIFQELLKEKPLKKDKIRAPRSSTSPTGDNGPKQGPLVGSSQAQRIL 60
          MNGFILQNSLNQSLIFQELLKEKPLKKDKIRAPRSSTSPTGDNGPKQGPLVGSSQAQRIL
Sbjct: 1  MNGFILQNSLNQSLIFQELLKEKPLKKDKIRAPRSSTSPTGDNGPKQGPLVGSSQAQRIL 60

Query: 61 REARRKEYCESLANEKKEGIAF 83
          REARRKEYCESLANEKKEGIAF
Sbjct: 61 REARRKEYCESLANEKKEGIAF 82

[Close]

BLAST of CsaV3_5G028030 vs. ExPASy TrEMBL
Match: A0A0A0KPA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G546570 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 58/75 (77.33%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MNGFILQNSLNQSLIFQELLKEKPLKKDKIRAPRSSTSPTGDNGPKQGPLVGSSQAQRIL 60
          MN FIL+NSLNQSLIFQEL+KEKPLKKDKIRAPRSSTSPTGDNGPKQGPLVGSSQ Q+I 
Sbjct: 1  MNVFILKNSLNQSLIFQELIKEKPLKKDKIRAPRSSTSPTGDNGPKQGPLVGSSQGQQIE 60

Query: 61 REARRKEYCESLANE 76
               +    SL NE
Sbjct: 61 TGTSGQVQPSSLGNE 75

The following BLAST results are available for this feature:

BLAST of CsaV3_5G028030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648590.1	5.8e-36	100.00	hypothetical protein Csa_008839 [Cucumis sativus]	[more]

BLAST of CsaV3_5G028030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G028030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA5	1.6e-20	77.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G546570 PE=4 SV=1	[more]

BLAST of CsaV3_5G028030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G028030.1	CsaV3_5G028030.1	mRNA