CsaV3_5G026380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G026380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Location	chr5: 21538651 .. 21541239 (+)
RNA-Seq Expression	CsaV3_5G026380
Synteny	CsaV3_5G026380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGCTCCTTCATGGGAATTAGTTGGTAACCTCAGAAACTGAGCTCTTCTTTCGTGCTGCTAAGAGGTCAGAAACATAACTTGACCTACTTGTTTTTTAAGCTATGGTTATAGTAAATTTTATTATACAAGTATGTTGAACATTGTTGTATCTATATTCTTCGACGCAATGACTTCAATCGTCGTGTAAAACATTTTAAAGAATTAAGTAATAAATAAACTGACACAGTGCAGTTTTTTATTAGGTAAGGTTTTCAGTTATGAGTAGATTTGTTTGTAACAAGGAGATAGTGAGATCAATTCTTGGGTGGCTAAGATGGATGTTCCATCACATATGGTTAATAATTAGTATGTGTTAATTAGTTCTCTTTCACTCTTTCTCTTCCTCTCTTTTCTATTTTATTTCATTTGTTTCTTGAGTGAATGAATGGCCAAAGTTTGATGAAGAAATCAACATATGGGATTAGTTTACTCCTTTACCCAGTCTCTTAAAAACTTGATACTAAAAAAGTTTGTTTGGTTTAAATACAGTGCAGGGTTTTGGTTGGAGTCAAAGATAATGAAGAATAATGATGGGCAGCTAAAAGGTGGAGGTTTTACTATTCCTTATCACCACCCTATGATCACCCACCACCAAGGTTTACTTGCCTTCTCTCCTTTTTTCTTATATTAGTTTTGGGGAAATAATGTTAGTTTCTCATTTCTTTTTCATTTTTTTCTCTTTCTACCAACAACTTTAAGAAAAAGTGATTGACATTATCAAAGTATCATTTCAAAATTTAAAGGATCATTTGATAATCATCTTGTTTTTTGGTTTTTTAAATTATTTACATACATATATATATATAATAAAGAAAGAAAGTGGTAGTTTTTTCTTTTTCTCTATCTCTCTTTTGAAGGTGATCCTACTTTTCTTTTTTCGGTGTTCAAAAATCAAAACAAAACTTTCAATAATTTGGAAAACTTATTATTTGTAACAGGAATCGTATAAAGAAAAGGAACCATTATAATTATAAATATGATAATTTGGTATAGAATAATATTAGTAAATATATATAACAAAAAAGAAAAAAAAAGATAGATATAGCAAAAATTACCTTTAATCTTCGGAGTCAATTAACGATAGACCATATCATTATTGATAGATTTTGTCATATCTACATCTATTTAAAAATATGTTGTTATACAATTAATTAATCTCTAAAGCGTGTTATCTAATGCAATTATCTAAATAGAATATGACAATAACGTGTAATGTGATGAGATTAGGAGGTAAACATATTGTTGGGATGGATTTCTTAACCAAATTGCAAATAATCTTTTACTTTTTTTTTTCTTTTTGTTGTGTGGAAGGTTGGAATAATGGAAGTATATCCATTACTGAAAATCATGTTTCACCACAGTCAATATTGTTTCCTAAGAAGCTGTGTTTCTTGGAGAGTGAATTGGTAACAACACTTTGATCCCCTCTCCTAAACTTAATTTCCAACAATTTTATTACTACTTTGTATACTAAAATTGTGTATTGATTCCTTTGTTTGTTGTGGCCTAATATATAATATAGAATGCAAAGAAAGATGAGTTATTGTTTGTCCAAAAAGCCCTACAAGTACAAACACCCCCATTTGATCATTTGCCAGCAGATTACAAGAGAATTAAGGTTAGTGCCCAAGCTTTTCTTTTTTTCTAAAATGGTATAGTTAATTAGTAACAAAAAATAATGGTGGTAACTTAAATTAGTCTCCAAAAGAATCACATATGAATAAGCATCTGATTCTGATGTATAGTTTGATGGGGGAGTAGTTGCAGGTACCATTACCAATAAGGAGAAGTCAAAAGCTTAGCGATAAAATTACTGCCCTTCAAAAGCTCGTTTCCCCTTACGGCAAGGTACCTCTTCTTTTTCTCTCTCTCTAAACTACTCTTCTATCCCTACCTCTCTACAGTTCAATTCAACACTCACACTTTCAACTCTATTTTTTACTCTATACTCACTTTCCTTCTTACTTAATTGTTCTTTTCTAAAAAATCAAATTAATATATAGTTTTGGTAAAAATGTAGATAAAAAAAATAAAAGAGAATTAAAAATGATTATGTACGTGTTTGTTGTTATTATAGACTGATACTGCATCAGTTCTTCAAGAAGCCTATCTTTATATCAAATTCATTCAACACCATATTCAGGTACAAAATATATTGATCCTTTCCCCTTTTCTTTTTCTTAATTTTCTCCTTCAATTTAATTTTCTCAAGTATAACATAACATCATGTTTCCTAAGTATATATATTGTCATATTTTAGGATCTGTTTCATAAACAATTTGAAAATAGAAATTTCTTAAATACATATGAATTGAAGCTAGAATTCTTCTTCTTCTTTTGCTGGGTTTGGAACAGACTATACTTCAAATGCAGAGTAGTTCATATAAAAGCCAAAATCCTGAGGTAAAAAGAAAAAAAAGAATGAAAAAGTGTTGTTAGTGAAATTTCAACTTTCAAGTAGAAGTAAAAAAGAATGACTCCAAAACTTTTGTACACAGGGAAATGATGAAGAGAAGAAAGGAATTCTAAGAAGTGAAGGATTATGTG

mRNA sequence

ATGAAGAATAATGATGGGCAGCTAAAAGGTGGAGGTTTTACTATTCCTTATCACCACCCTATGATCACCCACCACCAAGGTTGGAATAATGGAAGTATATCCATTACTGAAAATCATGTTTCACCACAGTCAATATTGTTTCCTAAGAAGCTGTGTTTCTTGGAGAGTGAATTGAATGCAAAGAAAGATGAGTTATTGTTTGTCCAAAAAGCCCTACAAGTACAAACACCCCCATTTGATCATTTGCCAGCAGATTACAAGAGAATTAAGTTGCAGGTACCATTACCAATAAGGAGAAGTCAAAAGCTTAGCGATAAAATTACTGCCCTTCAAAAGCTCGTTTCCCCTTACGGCAAGACTGATACTGCATCAGTTCTTCAAGAAGCCTATCTTTATATCAAATTCATTCAACACCATATTCAGACTATACTTCAAATGCAGAGTAGTTCATATAAAAGCCAAAATCCTGAGGGAAATGATGAAGAGAAGAAAGGAATTCTAAGAAGTGAAGGATTATGTG

Coding sequence (CDS)

ATGAAGAATAATGATGGGCAGCTAAAAGGTGGAGGTTTTACTATTCCTTATCACCACCCTATGATCACCCACCACCAAGGTTGGAATAATGGAAGTATATCCATTACTGAAAATCATGTTTCACCACAGTCAATATTGTTTCCTAAGAAGCTGTGTTTCTTGGAGAGTGAATTGAATGCAAAGAAAGATGAGTTATTGTTTGTCCAAAAAGCCCTACAAGTACAAACACCCCCATTTGATCATTTGCCAGCAGATTACAAGAGAATTAAGTTGCAGGTACCATTACCAATAAGGAGAAGTCAAAAGCTTAGCGATAAAATTACTGCCCTTCAAAAGCTCGTTTCCCCTTACGGCAAGACTGATACTGCATCAGTTCTTCAAGAAGCCTATCTTTATATCAAATTCATTCAACACCATATTCAGACTATACTTCAAATGCAGAGTAGTTCATATAAAAGCCAAAATCCTGAGGGAAATGATGAAGAGAAGAAAGGAATTCTAAGAAGTGAAGGATTATGTG

Protein sequence

MKNNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKTDTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLCX

Homology

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BLAST of CsaV3_5G026380 vs. NCBI nr
Match: XP_031742210.1 (transcription factor bHLH112-like [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 3.7e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKNNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA 60
           MKNNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA
Sbjct: 1   MKNNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA 60

Query: 61  KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT 120
           KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT
Sbjct: 61  KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT 120

Query: 121 DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC
Sbjct: 121 DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 173

[Close]

BLAST of CsaV3_5G026380 vs. NCBI nr
Match: KAE8648535.1 (hypothetical protein Csa_008520, partial [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 3.7e-93
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MKNNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA 60
           MKNNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA
Sbjct: 1   MKNNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA 60

Query: 61  KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT 120
           KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT
Sbjct: 61  KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT 120

Query: 121 DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC
Sbjct: 121 DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 173

[Close]

BLAST of CsaV3_5G026380 vs. NCBI nr
Match: XP_008463481.1 (PREDICTED: transcription factor bHLH114-like [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 4.3e-65
Identity = 144/175 (82.29%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 1   MKNNDGQLKGGGFTIPYHHPMITHHQ--GWNNGSISITENHVSPQSILFPKKLCFLESEL 60
           +  NDGQLKGGGFTIPY HP ITHHQ    NNGSISIT+NHVSP SI+FPKKLCFLESEL
Sbjct: 19  LMKNDGQLKGGGFTIPYQHP-ITHHQVKDCNNGSISITDNHVSPHSIVFPKKLCFLESEL 78

Query: 61  NAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYG 120
           NA K + LFVQ+AL  QTPPFD LP DYKRIKL+V  PIRRSQKLSDKITALQKLVSPYG
Sbjct: 79  NANKHD-LFVQRAL--QTPPFD-LPPDYKRIKLEV--PIRRSQKLSDKITALQKLVSPYG 138

Query: 121 KTDTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           KTDTASVL+EA LYIKFIQHHIQT+LQMQSSSYKSQNP+G  EEKKG LRSEGLC
Sbjct: 139 KTDTASVLEEACLYIKFIQHHIQTLLQMQSSSYKSQNPQG-IEEKKGNLRSEGLC 185

[Close]

BLAST of CsaV3_5G026380 vs. NCBI nr
Match: XP_038890859.1 (transcription factor bHLH112-like isoform X2 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 8.9e-47
Identity = 118/173 (68.21%), Postives = 136/173 (78.61%), Query Frame = 0


Query: 3   NNDGQ--LKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA 62
           NNDGQ  LKGGGFTIP  HP    +Q   N SIS ++N +SPQSILFPKK+  +ES+LNA
Sbjct: 21  NNDGQLKLKGGGFTIPCQHPFT--YQPGCNASISTSDN-ISPQSILFPKKVSSMESDLNA 80

Query: 63  KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT 122
           KK E LF QK L  QT P+D L  DYKR+KLQV  P+RRSQ+LSDK+TALQKLVSP+GKT
Sbjct: 81  KKHE-LFTQKGL--QTAPYD-LAGDYKRMKLQV--PVRRSQRLSDKVTALQKLVSPFGKT 140

Query: 123 DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           DTASVLQEA LYIKF+Q HIQ +LQMQSSSYKSQ PE   ++K+  LRSEGLC
Sbjct: 141 DTASVLQEACLYIKFVQEHIQNLLQMQSSSYKSQIPE-EIQQKQRNLRSEGLC 183

[Close]

BLAST of CsaV3_5G026380 vs. NCBI nr
Match: XP_038890857.1 (transcription factor bHLH111-like isoform X1 [Benincasa hispida] >XP_038890858.1 transcription factor bHLH111-like isoform X1 [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-45
Identity = 115/173 (66.47%), Postives = 136/173 (78.61%), Query Frame = 0


Query: 3   NNDGQ--LKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNA 62
           NNDGQ  LKGGGFTIP  HP    +Q   N SIS ++N +SPQSILFPKK+  +ES+LNA
Sbjct: 21  NNDGQLKLKGGGFTIPCQHPFT--YQPGCNASISTSDN-ISPQSILFPKKVSSMESDLNA 80

Query: 63  KKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKT 122
           KK E LF QK L  QT P+D L  DYKR+K ++ +P+RRSQ+LSDK+TALQKLVSP+GKT
Sbjct: 81  KKHE-LFTQKGL--QTAPYD-LAGDYKRMK-KLQVPVRRSQRLSDKVTALQKLVSPFGKT 140

Query: 123 DTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           DTASVLQEA LYIKF+Q HIQ +LQMQSSSYKSQ PE   ++K+  LRSEGLC
Sbjct: 141 DTASVLQEACLYIKFVQEHIQNLLQMQSSSYKSQIPE-EIQQKQRNLRSEGLC 184

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy Swiss-Prot
Match: Q9SFZ3 (Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 99  RSQKLSDKITALQKLVSPYGKTDTASVLQEAYLYIKFIQHHIQTI----------LQMQS 158
           R +KL D+I ALQ+LVSP+GKTDTASVL EA  YIKF+Q  I+T+             ++
Sbjct: 334 RKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPGKA 393

Query: 159 SSYKSQNPEGNDEEKKGILRSEGLC 174
           S   SQ+ EG++EE +  LRS GLC
Sbjct: 394 SQLVSQSQEGDEEETRD-LRSRGLC 417

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.8e-11
Identity = 58/190 (30.53%), Postives = 87/190 (45.79%), Query Frame = 0


Query: 4   NDGQLKGGGFTIPYH---HPMITHHQG-------WNNGSISITENHVSPQSILFPKKLCF 63
           ND QL     T P+H   + +I            WN+ S +   N      +  P+    
Sbjct: 178 NDPQLSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQ---I 237

Query: 64  LESELNAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPI--RRSQKLSDKITALQ 123
           + + L  K   L    ++  ++    +   A   R+    PLP    R + L D+IT+LQ
Sbjct: 238 ISTRLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQ 297

Query: 124 KLVSPYGKTDTASVLQEAYLYIKFIQHHIQTI----LQMQSSSYKSQNPEG----NDEEK 174
           +LVSP+GKTDTASVLQEA  YIKF+   +  +    ++  +S+ + Q   G     DE +
Sbjct: 298 QLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENE 357

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy Swiss-Prot
Match: Q9M0X8 (Transcription factor bHLH114 OS=Arabidopsis thaliana OX=3702 GN=BHLH114 PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 80  DHLPADYKRIKLQV--PLPI--RRSQKLSDKITALQKLVSPYGKTDTASVLQEAYLYIKF 139
           ++ P   KR +L+   PLP    R +KL D+ITALQ+LVSP+GKTDTASVL EA  YIKF
Sbjct: 152 EYSPRLLKRPRLETLSPLPSFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKF 211

Query: 140 IQHH-----------IQTILQMQSSSYKSQNPEGNDEEKKGI------LRSEGLC 174
           +Q             I ++ Q Q S+ KS N +G  EE +        L S GLC
Sbjct: 212 LQEQVTVLSNPEQNTIGSVQQQQCSNKKSINTQGEVEEDECSPRRYVDLSSRGLC 266

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy Swiss-Prot
Match: Q8VZ22 (Transcription factor bHLH103 OS=Arabidopsis thaliana OX=3702 GN=BHLH103 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 38  NHVSPQSILFPKKLCFLESELNAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPI 97
           +H  P+  +   K        + K  EL  ++ +  ++ P  +  P+ +   K+      
Sbjct: 139 DHQKPKEDMQACKSLTTCKRASEKSGELEDIESSQPLKRPRLE-TPSHFPSFKV------ 198

Query: 98  RRSQKLSDKITALQKLVSPYGKTDTASVLQEAYLYIKFIQH----------HIQTI---L 157
            R +KL D+ITALQ+LVSP+GKTDTASVL +A  YIKF+Q           H+ +I    
Sbjct: 199 -RKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSPHLNSIGSGE 258

Query: 158 QMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           Q Q S   S N    +   +  LRS GLC
Sbjct: 259 QKQWSDKSSNNTHNQNCSPRQDLRSRGLC 279

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy Swiss-Prot
Match: Q9FYJ6 (Transcription factor bHLH111 OS=Arabidopsis thaliana OX=3702 GN=BHLH111 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 102 KLSDKITALQKLVSPYGKTDTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEG--- 161
           KL DKIT LQ++VSP+GKTDTASVLQEA  YI F Q  ++ +      +   ++P G   
Sbjct: 210 KLRDKITTLQQIVSPFGKTDTASVLQEAITYINFYQEQVKLLSTPYMKNSSMKDPWGGWD 269

Query: 162 -NDEEKKG----ILRSEGLC 174
             D  K+G     LRS GLC
Sbjct: 270 REDHNKRGPKHLDLRSRGLC 289

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy TrEMBL
Match: A0A1S3CJD7 (transcription factor bHLH114-like OS=Cucumis melo OX=3656 GN=LOC103501641 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 144/175 (82.29%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 1   MKNNDGQLKGGGFTIPYHHPMITHHQ--GWNNGSISITENHVSPQSILFPKKLCFLESEL 60
           +  NDGQLKGGGFTIPY HP ITHHQ    NNGSISIT+NHVSP SI+FPKKLCFLESEL
Sbjct: 19  LMKNDGQLKGGGFTIPYQHP-ITHHQVKDCNNGSISITDNHVSPHSIVFPKKLCFLESEL 78

Query: 61  NAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYG 120
           NA K + LFVQ+AL  QTPPFD LP DYKRIKL+V  PIRRSQKLSDKITALQKLVSPYG
Sbjct: 79  NANKHD-LFVQRAL--QTPPFD-LPPDYKRIKLEV--PIRRSQKLSDKITALQKLVSPYG 138

Query: 121 KTDTASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           KTDTASVL+EA LYIKFIQHHIQT+LQMQSSSYKSQNP+G  EEKKG LRSEGLC
Sbjct: 139 KTDTASVLEEACLYIKFIQHHIQTLLQMQSSSYKSQNPQG-IEEKKGNLRSEGLC 185

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy TrEMBL
Match: A0A6J1JZG5 (transcription factor bHLH112-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489269 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 6.2e-46
Identity = 116/171 (67.84%), Postives = 134/171 (78.36%), Query Frame = 0


Query: 3   NNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNAKK 62
           NNDGQLKG GFTIP  HP IT+  G  N S S +EN VSPQS+LFPKK+ FL++E +AKK
Sbjct: 21  NNDGQLKGEGFTIPCQHP-ITYQPGC-NASKSRSEN-VSPQSVLFPKKISFLQNESHAKK 80

Query: 63  DELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKTDT 122
            E  F QK   VQ  P+D L  D KR+KLQ   P+RRSQ+LSDKITALQKLVSPYGKTDT
Sbjct: 81  RE-FFAQKG--VQAAPYD-LAGDNKRMKLQE--PVRRSQRLSDKITALQKLVSPYGKTDT 140

Query: 123 ASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           ASVLQEA LYIKF+Q HIQ +LQMQSSSYK+ NP+G  ++K+G LRSEGLC
Sbjct: 141 ASVLQEACLYIKFVQEHIQNLLQMQSSSYKNLNPQG-IQQKQGNLRSEGLC 181

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy TrEMBL
Match: A0A6J1FEH8 (transcription factor bHLH112-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444774 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.1e-45
Identity = 114/171 (66.67%), Postives = 134/171 (78.36%), Query Frame = 0


Query: 3   NNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNAKK 62
           NNDGQLKG GFTIP  HP IT+  G  N S S+TEN VSPQS+LFPKK+ F ++E +AKK
Sbjct: 21  NNDGQLKGEGFTIPCQHP-ITYQPGC-NASNSMTEN-VSPQSVLFPKKISFPQNESHAKK 80

Query: 63  DELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKTDT 122
            E  F QK   VQ  P+D L  D KR+KLQ   P+RRSQ+LSDKITALQKLVSPYGKTDT
Sbjct: 81  RE-FFAQKG--VQAAPYD-LAGDNKRMKLQE--PVRRSQRLSDKITALQKLVSPYGKTDT 140

Query: 123 ASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           ASVLQEA LYIKF+Q HIQ +LQMQSS+YK+ NP+G  ++++G LRSEGLC
Sbjct: 141 ASVLQEACLYIKFVQEHIQNLLQMQSSAYKNLNPQGT-QQRQGNLRSEGLC 181

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy TrEMBL
Match: A0A6J1JS15 (transcription factor bHLH112-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489269 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 114/171 (66.67%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 3   NNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNAKK 62
           NNDGQLKG GFTIP  HP IT+  G  N S S +EN VSPQS+LFPKK+ FL++E +AKK
Sbjct: 21  NNDGQLKGEGFTIPCQHP-ITYQPGC-NASKSRSEN-VSPQSVLFPKKISFLQNESHAKK 80

Query: 63  DELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKTDT 122
            E  F QK   VQ  P+D L  D KR+K     P+RRSQ+LSDKITALQKLVSPYGKTDT
Sbjct: 81  RE-FFAQKG--VQAAPYD-LAGDNKRMK----EPVRRSQRLSDKITALQKLVSPYGKTDT 140

Query: 123 ASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           ASVLQEA LYIKF+Q HIQ +LQMQSSSYK+ NP+G  ++K+G LRSEGLC
Sbjct: 141 ASVLQEACLYIKFVQEHIQNLLQMQSSSYKNLNPQG-IQQKQGNLRSEGLC 179

[Close]

BLAST of CsaV3_5G026380 vs. ExPASy TrEMBL
Match: A0A6J1FDK1 (transcription factor bHLH112-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444774 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.6e-44
Identity = 112/171 (65.50%), Postives = 132/171 (77.19%), Query Frame = 0


Query: 3   NNDGQLKGGGFTIPYHHPMITHHQGWNNGSISITENHVSPQSILFPKKLCFLESELNAKK 62
           NNDGQLKG GFTIP  HP IT+  G  N S S+TEN VSPQS+LFPKK+ F ++E +AKK
Sbjct: 21  NNDGQLKGEGFTIPCQHP-ITYQPGC-NASNSMTEN-VSPQSVLFPKKISFPQNESHAKK 80

Query: 63  DELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPIRRSQKLSDKITALQKLVSPYGKTDT 122
            E  F QK   VQ  P+D L  D KR+K     P+RRSQ+LSDKITALQKLVSPYGKTDT
Sbjct: 81  RE-FFAQKG--VQAAPYD-LAGDNKRMK----EPVRRSQRLSDKITALQKLVSPYGKTDT 140

Query: 123 ASVLQEAYLYIKFIQHHIQTILQMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           ASVLQEA LYIKF+Q HIQ +LQMQSS+YK+ NP+G  ++++G LRSEGLC
Sbjct: 141 ASVLQEACLYIKFVQEHIQNLLQMQSSAYKNLNPQGT-QQRQGNLRSEGLC 179

[Close]

BLAST of CsaV3_5G026380 vs. TAIR 10
Match: AT1G27660.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 9.0e-13
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 99  RSQKLSDKITALQKLVSPYGKTDTASVLQEAYLYIKFIQHHIQTI----------LQMQS 158
           R +KL D+I ALQ+LVSP+GKTDTASVL EA  YIKF+Q  I+T+             ++
Sbjct: 334 RKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQSQIETLSVPYMRASRNRPGKA 393

Query: 159 SSYKSQNPEGNDEEKKGILRSEGLC 174
           S   SQ+ EG++EE +  LRS GLC
Sbjct: 394 SQLVSQSQEGDEEETRD-LRSRGLC 417

[Close]

BLAST of CsaV3_5G026380 vs. TAIR 10
Match: AT1G61660.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.4e-12
Identity = 58/190 (30.53%), Postives = 87/190 (45.79%), Query Frame = 0


Query: 4   NDGQLKGGGFTIPYH---HPMITHHQG-------WNNGSISITENHVSPQSILFPKKLCF 63
           ND QL     T P+H   + +I            WN+ S +   N      +  P+    
Sbjct: 178 NDPQLSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQ---I 237

Query: 64  LESELNAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPI--RRSQKLSDKITALQ 123
           + + L  K   L    ++  ++    +   A   R+    PLP    R + L D+IT+LQ
Sbjct: 238 ISTRLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQ 297

Query: 124 KLVSPYGKTDTASVLQEAYLYIKFIQHHIQTI----LQMQSSSYKSQNPEG----NDEEK 174
           +LVSP+GKTDTASVLQEA  YIKF+   +  +    ++  +S+ + Q   G     DE +
Sbjct: 298 QLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENE 357

[Close]

BLAST of CsaV3_5G026380 vs. TAIR 10
Match: AT4G05170.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-12
Identity = 51/115 (44.35%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 80  DHLPADYKRIKLQV--PLPI--RRSQKLSDKITALQKLVSPYGKTDTASVLQEAYLYIKF 139
           ++ P   KR +L+   PLP    R +KL D+ITALQ+LVSP+GKTDTASVL EA  YIKF
Sbjct: 92  EYSPRLLKRPRLETLSPLPSFKVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKF 151

Query: 140 IQHH-----------IQTILQMQSSSYKSQNPEGNDEEKKGI------LRSEGLC 174
           +Q             I ++ Q Q S+ KS N +G  EE +        L S GLC
Sbjct: 152 LQEQVTVLSNPEQNTIGSVQQQQCSNKKSINTQGEVEEDECSPRRYVDLSSRGLC 206

[Close]

BLAST of CsaV3_5G026380 vs. TAIR 10
Match: AT1G61660.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-11
Identity = 56/190 (29.47%), Postives = 87/190 (45.79%), Query Frame = 0


Query: 4   NDGQLKGGGFTIPYH---HPMITHHQG-------WNNGSISITENHVSPQSILFPKKLCF 63
           ND QL     T P+H   + +I            WN+ S +   N      +  P+ +  
Sbjct: 178 NDPQLSWANKTNPHHQVAYGLINSFSNNANSRPFWNSSSTTNLNNTTPSNFVTTPQIIST 237

Query: 64  LESELNAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPI--RRSQKLSDKITALQ 123
              +    + +   +++A   ++       A   R+    PLP    R + L D+IT+LQ
Sbjct: 238 RLEDKTKTRAQSESLKRAKDNES------AAKKPRVTTPSPLPTFKVRKENLRDQITSLQ 297

Query: 124 KLVSPYGKTDTASVLQEAYLYIKFIQHHIQTI----LQMQSSSYKSQNPEG----NDEEK 174
           +LVSP+GKTDTASVLQEA  YIKF+   +  +    ++  +S+ + Q   G     DE +
Sbjct: 298 QLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENE 357

[Close]

BLAST of CsaV3_5G026380 vs. TAIR 10
Match: AT4G21340.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 38  NHVSPQSILFPKKLCFLESELNAKKDELLFVQKALQVQTPPFDHLPADYKRIKLQVPLPI 97
           +H  P+  +   K        + K  EL  ++ +  ++ P  +  P+ +   K+      
Sbjct: 139 DHQKPKEDMQACKSLTTCKRASEKSGELEDIESSQPLKRPRLE-TPSHFPSFKV------ 198

Query: 98  RRSQKLSDKITALQKLVSPYGKTDTASVLQEAYLYIKFIQH----------HIQTI---L 157
            R +KL D+ITALQ+LVSP+GKTDTASVL +A  YIKF+Q           H+ +I    
Sbjct: 199 -RKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITEKVSTSPHLNSIGSGE 258

Query: 158 QMQSSSYKSQNPEGNDEEKKGILRSEGLC 174
           Q Q S   S N    +   +  LRS GLC
Sbjct: 259 QKQWSDKSSNNTHNQNCSPRQDLRSRGLC 279

The following BLAST results are available for this feature:

BLAST of CsaV3_5G026380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742210.1	3.7e-93	100.00	transcription factor bHLH112-like [Cucumis sativus]	[more]
KAE8648535.1	3.7e-93	100.00	hypothetical protein Csa_008520, partial [Cucumis sativus]	[more]
XP_008463481.1	4.3e-65	82.29	PREDICTED: transcription factor bHLH114-like [Cucumis melo]	[more]
XP_038890859.1	8.9e-47	68.21	transcription factor bHLH112-like isoform X2 [Benincasa hispida]	[more]
XP_038890857.1	1.3e-45	66.47	transcription factor bHLH111-like isoform X1 [Benincasa hispida] >XP_038890858.1...	[more]

BLAST of CsaV3_5G026380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFZ3	1.3e-11	50.59	Transcription factor bHLH110 OS=Arabidopsis thaliana OX=3702 GN=BHLH110 PE=2 SV=...	[more]
Q94JL3	4.8e-11	30.53	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]
Q9M0X8	6.3e-11	44.35	Transcription factor bHLH114 OS=Arabidopsis thaliana OX=3702 GN=BHLH114 PE=2 SV=...	[more]
Q8VZ22	1.5e-09	33.56	Transcription factor bHLH103 OS=Arabidopsis thaliana OX=3702 GN=BHLH103 PE=1 SV=...	[more]
Q9FYJ6	2.6e-09	47.50	Transcription factor bHLH111 OS=Arabidopsis thaliana OX=3702 GN=BHLH111 PE=2 SV=...	[more]

BLAST of CsaV3_5G026380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJD7	2.1e-65	82.29	transcription factor bHLH114-like OS=Cucumis melo OX=3656 GN=LOC103501641 PE=4 S...	[more]
A0A6J1JZG5	6.2e-46	67.84	transcription factor bHLH112-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1FEH8	1.1e-45	66.67	transcription factor bHLH112-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JS15	1.5e-44	66.67	transcription factor bHLH112-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1FDK1	2.6e-44	65.50	transcription factor bHLH112-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of CsaV3_5G026380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27660.1	9.0e-13	50.59	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G61660.1	3.4e-12	30.53	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G05170.1	4.5e-12	44.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G61660.3	8.4e-11	29.47	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G21340.1	1.1e-10	33.56	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 97..160 e-value: 1.5E-6 score: 30.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 98..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..173
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 90..173
None	No IPR available	PANTHER	PTHR16223:SF138	TRANSCRIPTION FACTOR BHLH112	coord: 90..173
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 98..141 e-value: 6.38152E-15 score: 63.3543
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 87..136 score: 10.289653

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G026380.1	CsaV3_5G026380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity