CsaV3_5G025980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G025980
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 21131607 .. 21134978 (+)
RNA-Seq ExpressionCsaV3_5G025980
SyntenyCsaV3_5G025980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTCAATACTCTCACAAGTTCGGATCATGTAAGTTATCGCCAAATTTATTAATGAACTTTTTATATTGGAAATTGAAACAACCTTAGCACCCTTATGATATCCCATGCAAAACAAGATTTCAGAAATTACAATAGATCTGAAATACTTGATTACATAGAATAAATAAAAGCATTTCAATTGAGGTAGTTTTTCATTAATTTGTTTTATTTTCACTCTTTTTATATGCAGATTTTTTATTGGGAAATTGAGAAATTGGTTGGAGATGAAGGGAGGTGGTTTTCTACAATGAAGATTGAAGAGAGTTTCACTACTGATCCTGAGGAAGATAAAGAATCAGGTACCTTAGGGTTTTAATTCATGCAAAATTATTTTGTATATATAACTTAGAATCTAAATTGAATAAAGTTTATTTCATTCCTTGACAGAAAACCGACAACAAATCACTAAAGAAATGGTTTGAAAAGGTAAGAAGTTGGATAATCATCCCATTATATTAGAGAGTATGAAAGACTAACTGAACTTTTTTTCCCACTTAAAAGTATCTAATTGTTAATCTTTTAATATATGGTTCAAAAAATGCTGGCAACAGTAATTTAAAGCCATGAACTTTAAAATATTATCTACTTATTTGTCACTTCATGGTTTTCCTTTGTATATACTTATTCGTCAAATTCTTGTGAGAAGATGATATTTGGCTTTGTAGTGCTATTGTCCAACTTTCTTAAATAACTTTGAAAGGGAACGAGTATCATGTCGCTATGTATTTTCGTATAATTCTACATTTAAAATTGAAATTTATATGAATAAAAAATTTGATTTACAAACTAAGCATTATCTGTTGTTGTTTACGTCGAATGTGTCTTCGATCTGTGTCAACAACATTGAGTCATATGGTTTACTAAATGAATAATATGCTATATATTTTTCAAGGTTTGATCACACATTAAGCTTAAATCTTGAACAAAATTATTCTAAACGAATATAAATAATGTATAGTTTTATAAAACAATTCATATTAAAATTCTTACCGTACAATAATAATAAGCGTTATCAGATGTGATAAATTATTTTGTAATTGATGTGTACTAAGGGAAACAGTCATTTGATACAGTGGGCTCGTGTGTTGCTCCTCCTTGTACACAAAGTTCATTTCGCAAATGCCACATTGCGATATACTTTGTATTGATCCTACACCAATCTTGATCGTTTTTCTCTTAAATCAATTTGGTGCAGTGTAAGATTTGTATAGCACAATGATGGTTGGGTTTGAAGCTTACTGAACTATCACAACACACGATTTGGTACATGCAACTCAATGATATGCTTTTATAGGGCCCATGTAAGTCCATGCCACTTCAACAATATGACATCGATCAAGAAGCAATGCCATAATATTGAATTTGTATGGTGTCCAATTAACATGTTAGAAAAATAAACATAAGTAGACAACAAAAAATAAGTAGATAACATTTGTATAATACTTTACTACCCGAATGTGTATCAGTTAATCAAATATCTGTTGATAGGTTAGCAATATATTTGTCTATTATTTCAATGTAGGTAGAGCACCACGTTATCTAATGTGTGAAAAAATTAATAATAAGTTATAAAGAGTGAAAGTTCTATTAATATATAATAATAATAATAATAATAATAATAATAATAATAATAATACTTGAAACTCATTGGTCAAGCAATTGGAGTCTATAATGCAACTTATGAAGCTACATTGGGAAATGGGAAATATGTCATATGCCCATACTTGCAGTATCATTAATGGCCCGCGCCCTAAGAGTACGTACCAACCTAGTCAAAATCACTTAAAAGCGGAAGAAATGTGCAATGTACGAGGGTATTTAACTTGTTGGCAAATAAAAAGACTTCAATATATGAGTTGCATTATGCATGCACGAGCTTATCTCTGGATGTTCACAACATCAACATTTAGTGGCAATTCTATGAATTGTTCAGCCAACCATTGAAGACTCAATCTTTGACTTTTCATGTCAGGTGGTAAAACTGCTAAGAAATCTTCACATACTTGCTGTCAGGTTAACGATTCTACAATAGGCTCTTTGTCCACAAGTAACCTCAATTGGATCGCAATGTAATTGTGCACTCTTCACAAGACATATGAAATGTGTGAGTCTCTAGTCTCCAACGCTCCACCAAAGTAATAATTAAGTATCAATCCAACTGCATGAATCCTATATGTGAAACTCCAAGACATCCAACAGCCTCTAAGTACAACACTCATCAAAAGGGATCGTGTGTTGCGATGCTTCCTCTCTCCTCAACCAACTCAAAACCAATGTAGAGGAAGTATCTCAAAACCAATATGAGCGATGGGACAGTTGTTGATATAGTTGGGTACGATCAACAAGGTCAGGTTCCATTGTGCAAATTTCCTAAAACATATTTAATTAATAACATAGATTAAACCCTAAAATATACATCAAGTTATAAAATCAAACAATTACATAAAAGTAGTTCATTAAAAATTACAAAAACCCTAAAATACAACATATATGTGTCTTGAAGAAAAAACACGTAAAGGACAAGTACCTCATGTTATGTCCTTCTGCCTTACAGATTGTATATCTAACTAATTGATTGGACTCTAACTAATTTGATTGGACTCTTTTCAATCCATTTCATTATGGATCCTAGTAGTTTTAGGTCAACGGGGTTCTCTAAGTAAGTCTGCATTTAGGCGAACTTCACTGAATGATAACTTTGGTCAATAATCTAAATATTTATAGTCAAACGATACTTGGACATCAAGCAAATCAAATGACTTTAATTTGTCCTTGATATATGTGTATGATCCAATGACTCCAAATATTCTAGAGAGACGTGAAAGATCCAACAACCACAAATTAATCTTGAACAAAGTGTGAGATTCAATGATCCAAAATTGAAGAAAAATCTTGATAATTATCCAACATTATTATGGCTTCAATTGAATACTTTAACATTTAATTGAATATTTCAATTTACTTTGTCGATTTATAAAACAAAATAACATTATCACCATTCCACATAAGCACTTAACAATTCAATCATTTTTGTGTTTGTTTTAGTGACCCTTTAGAATCATTTTACTAACCTAAGAAACTAAAATGTCACTATTAAAATCTTTTGATCGATTCCAAATCTTATGGACTAATAGTTCATTTTTGGACTTGGTTTTATGCTTAATATTTATTGAAAACAAAAATTAAAGAGTCATGAGAAAAATAATACATAGAAAAGATTTATATTTTATAATATTGTATATAAAATCCCGCAATTGCAAAGCAATTAGGGTTTGAGTTACCGCCAGTCAGTCTTCACATACTGCTTTCGAATTTGGGCGTTTCTTGA

mRNA sequence

ATGGAGCTCAATACTCTCACAAGTTCGGATCATATTTTTTATTGGGAAATTGAGAAATTGGTTGGAGATGAAGGGAGGTGGTTTTCTACAATGAAGATTGAAGAGAGTTTCACTACTGATCCTGAGGAAGATAAAGAATCAGGGTTTGAGTTACCGCCAGTCAGTCTTCACATACTGCTTTCGAATTTGGGCGTTTCTTGA

Coding sequence (CDS)

ATGGAGCTCAATACTCTCACAAGTTCGGATCATATTTTTTATTGGGAAATTGAGAAATTGGTTGGAGATGAAGGGAGGTGGTTTTCTACAATGAAGATTGAAGAGAGTTTCACTACTGATCCTGAGGAAGATAAAGAATCAGGGTTTGAGTTACCGCCAGTCAGTCTTCACATACTGCTTTCGAATTTGGGCGTTTCTTGA

Protein sequence

MELNTLTSSDHIFYWEIEKLVGDEGRWFSTMKIEESFTTDPEEDKESGFELPPVSLHILLSNLGVS*
Homology
[Close]
BLAST of CsaV3_5G025980 vs. NCBI nr
Match: KGN51233.1 (hypothetical protein Csa_009041 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 6.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MELNTLTSSDHIFYWEIEKLVGDEGRWFSTMKIEESFTTDPEEDKESGFELPPVSLHILL 60
          MELNTLTSSDHIFYWEIEKLVGDEGRWFSTMKIEESFTTDPEEDKESGFELPPVSLHILL
Sbjct: 1  MELNTLTSSDHIFYWEIEKLVGDEGRWFSTMKIEESFTTDPEEDKESGFELPPVSLHILL 60

Query: 61 SNLGVS 67
          SNLGVS
Sbjct: 61 SNLGVS 66

[Close]
BLAST of CsaV3_5G025980 vs. ExPASy TrEMBL
Match: A0A0A0KNP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496490 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MELNTLTSSDHIFYWEIEKLVGDEGRWFSTMKIEESFTTDPEEDKESGFELPPVSLHILL 60
          MELNTLTSSDHIFYWEIEKLVGDEGRWFSTMKIEESFTTDPEEDKESGFELPPVSLHILL
Sbjct: 1  MELNTLTSSDHIFYWEIEKLVGDEGRWFSTMKIEESFTTDPEEDKESGFELPPVSLHILL 60

Query: 61 SNLGVS 67
          SNLGVS
Sbjct: 61 SNLGVS 66

The following BLAST results are available for this feature:
BLAST of CsaV3_5G025980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51233.16.5e-30100.00hypothetical protein Csa_009041 [Cucumis sativus][more]
BLAST of CsaV3_5G025980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNP33.2e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496490 PE=4 SV=1[more]
BLAST of CsaV3_5G025980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G025980.1CsaV3_5G025980.1mRNA