CsaV3_5G025780 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G025780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RNA pseudouridine synthase 5
Location	chr5: 20948238 .. 20954142 (-)
RNA-Seq Expression	CsaV3_5G025780
Synteny	CsaV3_5G025780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAAAGTAATTTTCCCTCTTACTCTTCTCTTCAAGACCAAACGCTACTTCCCGCTCGTGATTCTGCACTGAATTCCTACATTTCAATTACCATTGAGGCCTTGAATCCATTGCTTTCTAAATTCCTTTCTCAATTTTCTCATCGAAGATCAATCCCTATCATGCTCCTCGGAAGGTCCTTTCAAGTTATCGGAATTCCATGGCCCGATCTCAACGACGGATTGTTCTACAACGATGTCGTTAAACCCCCCGACTCCGGTTCGTTTTCTTTCAATTCAACTTCCACTTCCCCCCCTCCTAGAAATTTCAATTTCATCTTTCACGATTTCTTCTTCTTTGCGTGATTATATATTTCCAGGGAAGTCTTTGATCCACTTCTATTCTTGGAAATATAAGAGTTCGGCTCCACTGGAGGGGTAAGTTCTACTAAAACTCTATCTAGTTTATCGGAATATCTTGTGTTTCATATCTCTTACTCTTAGGTTATTGCTGATCATTAATGTAGCTTGTTTTGCATCTATTACTTTGCAGCTGGTTGCAGCGAATTAAGAACGAACAGGTACGGTGGTCTTTAATTTAGGCAGTTGAGGACATATGTGAAAGAGGTATTTCATTGTTATTTATGCTTGAAGTATTTTGAAACAAAATCAATTTGGTAAGTGTAGATTACAATCGATGGTGAGGTTATCACAGATCCAGAAACTATTCTCAGGTTCTTTACTTTGATTCCTTTGCTACAGATTTTATTGGCATGTTTAAAAGTTTCCATCATACCATTAATTGTTTTCAAATATTACAAATCTGTAGAATTGGTTCTGATTTGGTTTATCGTCGACTTCCATGGAAAGAACCGGATACCCCTTATTTACTCGAGATTCTTTACGAAGACAATGAAATGGTAAATGCATTATAGCTGGTTCTTTCTTTTTTGTTGTAATCTGTGTTATTGGTTGCTTCGAGTTTCCATGAAGTCTTAAAGTACCTTCTATTCTTCAGATTGCATTAAATAAACCGTCTGGCTTGCAAGTGTTACCTGGTGGTGTTTTTCAGCAACGGACAGTTTTGACACAGCTTCAGTGGTGGTCAAGTAAGCAGAGTTTCTCCGTCTCAGAAGAGTTGCACCCTGTTCCTGTTCATCGTTTAGGAAGGGGGACTTCAGGTTAGATTGCATAAACCCAATGGTGAACAAGATCATCCTTTATACGTGGAAGCTTTATTATTATTTACTATCTTTGTCGGATATCTGAGTACTTGTCAGCCTATGCCAAAGTCAAACGAAGATTGTATGCGATAGCATTATATGCACAAGGCATTAGCACTTTGTGTTGGAATGAAACAACGAGCTGATACTGCGTGGGATGTTGAAATGTGGAATTAGTCATGAGATTTAGGGTGCTTCTTTCAACTATAGATGTCACCTTTTTCCTACTTGGTGTGCTGTTCCGTAAGAATTTCTCTAGCACCCTAAATAGAGGATAGAAACACCATCAGTTCATTTATCAACATTAGGTATCCTTGAAGAATTCTGTATTGCTACCACATTTCTTGGTTTAAATGAAGCACTATTTCTCTAGGTTGTTGTGGAAGTTCATATTGCCGAAATTAATGCCAGAGAGATATTTCACTGTGTCTAGTACTCTCAGTTTGATAAATACCCAAAGTTGTTACGCTAATCATGTATGGTCCTTTTACAAGATACCATTTACTTTTGGCCATGGACTATTGTCAACTTTTTGGTAAATGGATTATTTTTCCTCACTTTCATGATACACTAATCAAATATGTTGAAAATGTACTTCAATTTGGTCTTTAAAATGCTTCATTATTCCCTGCTTATTTCTATTTACAAATCCCTCAGGAATATTATTATGTGCAAAAACAAAGCTCGCCAGAACACAGTTTGCTGCATATTTTGCTGAGGGAACATCTTCCGTTAGAAGAAACAGGTTTAGGAACATACCTTTAGTACATTTCTCGCCTTGTCTCTGCATGTGGATTTTATATATGCAGAGAATGATAGTTTGTTTGTATTTCCTATAAGCTGATAAGCTTTTGTCTCCTACCATCTTTCAGTGGCTTTCCTAGTTCGTAATCTTCTTGATGGTAAAATTTAACTTTTACCATTGTGGAAATTGTGAAAATTTACTTTGTTGTTCCACTACTTAGAGTTTTATTCTTATGATAGCTAGAGTTACATAATTCAATGATAAGTTCTTGGTATTGTGCTACTTCTACTTTATTCTACATTATAATATGAAGATTTTTCTGCCAATGGACATAACTCAACTGGTTAAGTCATGTACCCTTGAGTCCTTTACTAAAAGGTCAAATATTGAAAAAAAAGCATGAAGATTCTTCTCAAACATATGTTAGGTGCACGTGCACCAATCGGGCTGAAGAAGGTTCTGGTTCTGGATTTATGATGTCTACCATATTGCTAGGTTTCTGAATAATGATTTTGGACCACTAGTTTTGCAAATCTAGAAAGATAAATACATGTGAATTCTGTCTGGTAATCAAATAATTGGGCTGTCCGTGTGAGTATTTCATTAATTTTAGTTTCTTTTTTCTTTGTCAAATAAAGAAAACAAGAATGAATAAATAATATGTGGACGAGGCTGAAGACGAAGCAATCACAGGTTATGGGCATACGTGGATTCGGTCAAAGAATTTAAGGAAACTGCATCGTCATCTAGGCTAGTACCGGAAACTCTACATTGATAGGAGGAAAATCTTTTGTGTATATATTATATACATTAAGTTACCAGAATTGATAATTTTTCACCTCATCTGCACCCAAGTTACTGGTTTTCAGCTGTACTCTCTAGCAAAATATAAATCACCATCAGCCAAAATGACAGACATTAGAAACATCTGAATGTGTAATGTCTTCTTTTTTTTTTTGGTAAAATGTAAGGGTTGAATGTAATTTAGTTGTTAACTGGGATAGCTCTTGTTTTTAAGGACATTTTGTCTTATATTTGTATCTGTGATTGATTTCCACCATATTATTAATGTTTGAACCCGACTTAGAAACAGCACTATGGAGGAAGGTACAAAAAGGAAAATTTCAAAAATATATCGTGCGCTTGTGACTGGAATAATTCATGATGATGAGGTATATATATATTGATACTTCTCATATAACTTCTTGTGGTTATAGTCTTGTAGCATTTTCATTTCATCCTTAGAATTTTTCTACTGTTCCCATTCTTGTAAACGGTACTGAGCTAGTAATATTAATTCTAAAATGTTATATGTTAGATGATAATTGTTTGACAATCTATTAGCAAAGGTCGTTTGTTCTGAAATAACATAAAGGTGACGTTGAAAACTCTAAACATAGTTGAAATTTTAAATTTGTTGCAAATAGTTGCAGCGCTTTCTCCCTGAGTTAGTGTGCAGAATAATAGAGGGTTTGGTCTAATAAGTGGTCATTATATCACCGTAAATTGAAGAGTTTTGTTCCTGTTCTTTCTTGCTTCATATATATATGATTGAGAATTCTTTTTACAGGTGAGCGTTGACCAGCCAATTGGAAGGATGCAATATCCTGGGGTTGCGCAGGGCCTGTATGTTGCCACTCCCTCAGGTTTTTGGTTGCATTTTATATGTTGATTCTTGAGGACTGTTGCTACCATAAATTGTACCATATAGGGAAAGCATAAACGATAAATCTCAAAGTTTTTGGCTAAGAAAGAGGAGTGCCATAATTTATGGAGTTCTTGATAAATTTAGATGTTCATCACGTTATTGTACTGTTCATGTTTATTTCCATTGTGTATCTGACCGTTTCTTCAATATTTATTAGCTTCAATACTCAATCACATATGCTTTTTTGAATTAATAACTTGAGCAGGGAAACCAGCTTGCAGTAAAGTCAATGTTCTTGAGAGAGATGAACAAAGCAAACACACATTGGTCCAGGTATCCCATTTTGTTGCACATTCTGCTTGTACTTCAAAACTACGAATTCTTTTTCTGCTGTACTGAGATTTACTGCCAAGCTTTCAATTCTTCACTTTGTTTTTATAAATTAGTTAAGATCGATTGAGATGGCATTCATTAATTTTGCAAGTCATTTAAATAAACTTTGCATCTGGTCTAATAGTGAAAAATCTTCTGAAAAGGAGAATGAATAGTGTGATGTACTACAGTTTAAAGACTTTAAGTTACGTCGTACATTTACAGGTAGAAATTCAGTCTGGACGGCCCCACCAAATCCGTATCCACCTTTCTTCAATTGGACATCCTCTATTAGGTAATGCTGTTAAAAGTAATTCATTCATTCATCAACTTCTAAATCTTTTTAAGTTCTCAACTTCATTATGAATGTGTTGAAAATTCTTTGCTAAAGTTTTCTTTCTTTTTCTTTTTCTTTTTTTTTGGTAGGTGATCCTCTCTATGTTGCTGGCGGGCAACCAAACTGCCTTCATTCTGAGGTAGTAAATCAGAGTTTTGCAGAAGACGGGTATGAATTTGGTGTTTTGTTTAATTTCATTCTTTATATTCTTGTCAGCATAAAACATTTTTTTTCTTTCTTAAAAAGTATCCTAAAACAACCTAGGAGGGGGATTTGAACCCAAGACCTCTTGTTTTCGGATATATACATACAAATGCTAGTTGAACTAAACTCATATTGACCAACATAAAACATTTAGTTCAAGTAACTATTGCGATTTGCATCTTTCTTTAGATAATACATGAATTTAATTCTTAACCCAAATTCATTATTTCAAAATTAACTTGGTTTTTGGAAACATTGATAAAATAACAAAACAAGAAATTTAGAAGTGGAAGAAATGTAAGCTAGTTTTAAACAAAAAAACAATCAAATGATTATCAAACAAAAGATCATTGTTCTTTTTGTTTAGAGTGAATCATAAAATGCAAGACTATATTTTGTTTGATAAATTGATGGAAAGGTTACAATACTAATTACAAGATATAGATAGAAAAGAACCACTCATATGAACTCCCCAAAATTAACACTATGAGGGGAAATGTCTGGAATGTTATGCACGGTGTAGATTGTAGAATAGTTAACCCATTTCATGGGTTTATAGTCCCGTTCTAACTAAAGCTTATGTCTTTTCCTTTTTTCCAACAAAATCGTGTATATATATTTATATTATGATGTGCAGAGGTTACGAAAGGCCTACGAAACCTGTGCCTGGAGATTGTGGCTACTACTTGCACGCGCATCAGTTGATTCTCTATCACCCAAAAACAAATGAGGTATGTTCTGAGATATTTGGGTCGTTAAGGATTTATTCGTGTGATAGGAACTCGTAATCATGTGAATTATGTGTGCATTCTTCTTCTTCTTTTCTTAATTCTTTCTTTCTGTGTATTAACTAAAGAAAGTACAAGGGTTTTCTTGTGTTGTTGAAGGTTGTGAAGATCATCGCACCACTTCCTCCGATCCTTCGCACACGTATTGAGGCTGAAGATGTCCACGAGTGAAAGTGGGTGGATAGATGTTTGCGTGGATGTCCCGAAGATTAGTTCTATTCCCTTTTCATATACTACTACTTCATTACTTTTTTTCTTAATTTTTAATCGCCACATGAAAATACTTACGTGTTTTCTCAAAAACTGCTATACGTTGGTAGGAGGTGACTGAAAACACAATAACAAAATCTCTTTTATAAAAAGTTAAAGTAATTGAAACTTGTTTCGACCTTTAGAAAGGCGAGAAAGGTTCAATTTAAACAAAGCAAGAGAGGGGTTTTATCAAACCATCTTATCATCTATGAACTAATTAAGTTCTAAGTTACTGACTAAATTTATAATAACAAAAATTCTATGGACATTTCTACAGAAATGTGTCCTTCAAATGTAACGTGTTAACTCTGCAATGGGCAACTGATTGAATATAATTTTTTTTTTTTGTTTTGTTTT

mRNA sequence

ATGCTCCTCGGAAGGTCCTTTCAAGTTATCGGAATTCCATGGCCCGATCTCAACGACGGATTGTTCTACAACGATGTCGTTAAACCCCCCGACTCCGGGAAGTCTTTGATCCACTTCTATTCTTGGAAATATAAGAGTTCGGCTCCACTGGAGGGCTGGTTGCAGCGAATTAAGAACGAACAGATTACAATCGATGGTGAGGTTATCACAGATCCAGAAACTATTCTCAGAATTGGTTCTGATTTGGTTTATCGTCGACTTCCATGGAAAGAACCGGATACCCCTTATTTACTCGAGATTCTTTACGAAGACAATGAAATGATTGCATTAAATAAACCGTCTGGCTTGCAAGTGTTACCTGGTGGTGTTTTTCAGCAACGGACAGTTTTGACACAGCTTCAGTGGTGGTCAAGTAAGCAGAGTTTCTCCGTCTCAGAAGAGTTGCACCCTGTTCCTGTTCATCGTTTAGGAAGGGGGACTTCAGGAATATTATTATGTGCAAAAACAAAGCTCGCCAGAACACAGTTTGCTGCATATTTTGCTGAGGGAACATCTTCCGTTAGAAGAAACAGCACTATGGAGGAAGGTACAAAAAGGAAAATTTCAAAAATATATCGTGCGCTTGTGACTGGAATAATTCATGATGATGAGGTGAGCGTTGACCAGCCAATTGGAAGGATGCAATATCCTGGGGTTGCGCAGGGCCTGTATGTTGCCACTCCCTCAGGGAAACCAGCTTGCAGTAAAGTCAATGTTCTTGAGAGAGATGAACAAAGCAAACACACATTGGTCCAGGTAGAAATTCAGTCTGGACGGCCCCACCAAATCCGTATCCACCTTTCTTCAATTGGACATCCTCTATTAGGTGATCCTCTCTATGTTGCTGGCGGGCAACCAAACTGCCTTCATTCTGAGGTAGTAAATCAGAGTTTTGCAGAAGACGGAGGTTACGAAAGGCCTACGAAACCTGTGCCTGGAGATTGTGGCTACTACTTGCACGCGCATCAGTTGATTCTCTATCACCCAAAAACAAATGAGGGTTTTCTTGTGTTGTTGAAGGTTGTGAAGATCATCGCACCACTTCCTCCGATCCTTCGCACACGTATTGAGGCTGAAGATGTCCACGAGTGA

Coding sequence (CDS)

ATGCTCCTCGGAAGGTCCTTTCAAGTTATCGGAATTCCATGGCCCGATCTCAACGACGGATTGTTCTACAACGATGTCGTTAAACCCCCCGACTCCGGGAAGTCTTTGATCCACTTCTATTCTTGGAAATATAAGAGTTCGGCTCCACTGGAGGGCTGGTTGCAGCGAATTAAGAACGAACAGATTACAATCGATGGTGAGGTTATCACAGATCCAGAAACTATTCTCAGAATTGGTTCTGATTTGGTTTATCGTCGACTTCCATGGAAAGAACCGGATACCCCTTATTTACTCGAGATTCTTTACGAAGACAATGAAATGATTGCATTAAATAAACCGTCTGGCTTGCAAGTGTTACCTGGTGGTGTTTTTCAGCAACGGACAGTTTTGACACAGCTTCAGTGGTGGTCAAGTAAGCAGAGTTTCTCCGTCTCAGAAGAGTTGCACCCTGTTCCTGTTCATCGTTTAGGAAGGGGGACTTCAGGAATATTATTATGTGCAAAAACAAAGCTCGCCAGAACACAGTTTGCTGCATATTTTGCTGAGGGAACATCTTCCGTTAGAAGAAACAGCACTATGGAGGAAGGTACAAAAAGGAAAATTTCAAAAATATATCGTGCGCTTGTGACTGGAATAATTCATGATGATGAGGTGAGCGTTGACCAGCCAATTGGAAGGATGCAATATCCTGGGGTTGCGCAGGGCCTGTATGTTGCCACTCCCTCAGGGAAACCAGCTTGCAGTAAAGTCAATGTTCTTGAGAGAGATGAACAAAGCAAACACACATTGGTCCAGGTAGAAATTCAGTCTGGACGGCCCCACCAAATCCGTATCCACCTTTCTTCAATTGGACATCCTCTATTAGGTGATCCTCTCTATGTTGCTGGCGGGCAACCAAACTGCCTTCATTCTGAGGTAGTAAATCAGAGTTTTGCAGAAGACGGAGGTTACGAAAGGCCTACGAAACCTGTGCCTGGAGATTGTGGCTACTACTTGCACGCGCATCAGTTGATTCTCTATCACCCAAAAACAAATGAGGGTTTTCTTGTGTTGTTGAAGGTTGTGAAGATCATCGCACCACTTCCTCCGATCCTTCGCACACGTATTGAGGCTGAAGATGTCCACGAGTGA

Protein sequence

MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAPLPPILRTRIEAEDVHE*

Homology

[Close]

BLAST of CsaV3_5G025780 vs. NCBI nr
Match: XP_011655311.1 (RNA pseudouridine synthase 5 isoform X2 [Cucumis sativus] >KAE8648514.1 hypothetical protein Csa_008288 [Cucumis sativus])

HSP 1 Score: 776.9 bits (2005), Expect = 7.7e-221
Identity = 376/376 (100.00%), Postives = 376/376 (100.00%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE
Sbjct: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP
Sbjct: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 181 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240
           AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT
Sbjct: 181 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240

Query: 241 PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300
           PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN
Sbjct: 241 PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300

Query: 301 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAP 360
           CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAP
Sbjct: 301 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAP 360

Query: 361 LPPILRTRIEAEDVHE 377
           LPPILRTRIEAEDVHE
Sbjct: 361 LPPILRTRIEAEDVHE 376

[Close]

BLAST of CsaV3_5G025780 vs. NCBI nr
Match: XP_011655310.1 (RNA pseudouridine synthase 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 771.9 bits (1992), Expect = 2.5e-219
Identity = 376/378 (99.47%), Postives = 376/378 (99.47%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE
Sbjct: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP
Sbjct: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 181 AEGTSSVR--RNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV 240
           AEGTSSVR  RNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV
Sbjct: 181 AEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV 240

Query: 241 ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQ 300
           ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQ
Sbjct: 241 ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQ 300

Query: 301 PNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKII 360
           PNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKII
Sbjct: 301 PNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKII 360

Query: 361 APLPPILRTRIEAEDVHE 377
           APLPPILRTRIEAEDVHE
Sbjct: 361 APLPPILRTRIEAEDVHE 378

[Close]

BLAST of CsaV3_5G025780 vs. NCBI nr
Match: XP_011655312.1 (RNA pseudouridine synthase 5 isoform X3 [Cucumis sativus])

HSP 1 Score: 752.7 bits (1942), Expect = 1.6e-213
Identity = 369/378 (97.62%), Postives = 369/378 (97.62%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE
Sbjct: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP
Sbjct: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 181 AEGTSSVR--RNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV 240
           AEGTSSVR  RNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV
Sbjct: 181 AEGTSSVRRNRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYV 240

Query: 241 ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQ 300
           ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQ
Sbjct: 241 ATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQ 300

Query: 301 PNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKII 360
           PNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE       VVKII
Sbjct: 301 PNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE-------VVKII 360

Query: 361 APLPPILRTRIEAEDVHE 377
           APLPPILRTRIEAEDVHE
Sbjct: 361 APLPPILRTRIEAEDVHE 371

[Close]

BLAST of CsaV3_5G025780 vs. NCBI nr
Match: XP_008465671.1 (PREDICTED: RNA pseudouridine synthase 5 isoform X1 [Cucumis melo])

HSP 1 Score: 738.4 bits (1905), Expect = 3.0e-209
Identity = 359/376 (95.48%), Postives = 366/376 (97.34%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYS KYKSSAPLEGWLQRIKNE
Sbjct: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSCKYKSSAPLEGWLQRIKNE 60

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGS+LVYRRLPWKEPDTP+ LEILYED+EMIALNKPSGLQVLP
Sbjct: 61  QITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPSGLQVLP 120

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSS QSFS+SEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 121 GGVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 181 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240
           A+GTSSV RNST EEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT
Sbjct: 181 ADGTSSVIRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240

Query: 241 PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300
           PSGKPACSKVNVLERDEQ +HTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN
Sbjct: 241 PSGKPACSKVNVLERDEQGEHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300

Query: 301 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE-GFLVLLKVVKIIA 360
           CLHSEVVNQSFAEDGGYERP KPVPGDCGYYLHAHQLILYHPKTNE GFLVLLKVVKI+A
Sbjct: 301 CLHSEVVNQSFAEDGGYERPMKPVPGDCGYYLHAHQLILYHPKTNEKGFLVLLKVVKIVA 360

Query: 361 PLPPILRTRIEAEDVH 376
           PLPPILRTR EAED H
Sbjct: 361 PLPPILRTRSEAEDFH 376

[Close]

BLAST of CsaV3_5G025780 vs. NCBI nr
Match: XP_008465672.1 (PREDICTED: RNA pseudouridine synthase 5 isoform X2 [Cucumis melo])

HSP 1 Score: 724.2 bits (1868), Expect = 5.9e-205
Identity = 352/375 (93.87%), Postives = 359/375 (95.73%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYS KYKSSAPLEGWLQRIKNE
Sbjct: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSCKYKSSAPLEGWLQRIKNE 60

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGS+LVYRRLPWKEPDTP+ LEILYED+EMIALNKPSGLQVLP
Sbjct: 61  QITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPSGLQVLP 120

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSS QSFS+SEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 121 GGVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 181 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240
           A+GTSSV RNST EEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT
Sbjct: 181 ADGTSSVIRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240

Query: 241 PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300
           PSGKPACSKVNVLERDEQ +HTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN
Sbjct: 241 PSGKPACSKVNVLERDEQGEHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300

Query: 301 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAP 360
           CLHSEVVNQSFAEDGGYERP KPVPGDCGYYLHAHQLILYHPKTNE       VVKI+AP
Sbjct: 301 CLHSEVVNQSFAEDGGYERPMKPVPGDCGYYLHAHQLILYHPKTNE-------VVKIVAP 360

Query: 361 LPPILRTRIEAEDVH 376
           LPPILRTR EAED H
Sbjct: 361 LPPILRTRSEAEDFH 368

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy Swiss-Prot
Match: Q5M721 (RNA pseudouridine synthase 5 OS=Arabidopsis thaliana OX=3702 GN=At3g52260 PE=2 SV=2)

HSP 1 Score: 486.5 bits (1251), Expect = 2.7e-136
Identity = 246/369 (66.67%), Postives = 286/369 (77.51%), Query Frame = 0


Query: 8   QVIGIPWPDLNDGLFYNDVVKPPDSGKSLI-HFYSWKYKSSAPLEGWLQRIKNEQITIDG 67
           Q IG+PWP+LNDGL Y D +   +S  + +  FY  KYKSSAPL GW+QRI+N QI IDG
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDG 65

Query: 68  EVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQ 127
           EV+ DP T+LR GS LVY RLPWKEPDTPY LE+LYED+++IALNKPSGLQVLPGG+FQQ
Sbjct: 66  EVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQ 125

Query: 128 RTVLTQLQWWSSKQSFSVS--EELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGT 187
           RTVLTQLQW   K    +   E  HPVPVHRLGRGTSGILLCAKTKLA+T+ AAYFAEGT
Sbjct: 126 RTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGT 185

Query: 188 SSV-RRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSG 247
           S V   N   E GT RK+SKIYRAL  GI+ +DEV + QPIG ++YPGVAQGLYVA+P G
Sbjct: 186 SLVGSGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPEG 245

Query: 248 KPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPNCLH 307
           KPA SKV VLERD +   +LV+VEIQSGRPHQIRIHL+ +GHPL+GDPLYVAGGQP C  
Sbjct: 246 KPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLYVAGGQPKCFD 305

Query: 308 SEVVNQ--SFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAPL 367
            ++V+   +FAEDGGY RP + VPGDCGY+LHAHQ+ L         L   KVVKI+APL
Sbjct: 306 PDLVDDAAAFAEDGGYRRPNQAVPGDCGYHLHAHQVEL------PNLLNTHKVVKIVAPL 365

Query: 368 PPILRTRIE 371
           PPIL+TR E
Sbjct: 366 PPILQTRCE 368

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy Swiss-Prot
Match: Q0DST9 (RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0288500 PE=2 SV=2)

HSP 1 Score: 453.0 bits (1164), Expect = 3.3e-126
Identity = 231/373 (61.93%), Postives = 276/373 (73.99%), Query Frame = 0


Query: 11  GIPWPDLNDGLFYNDVVKPPDSG--KSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEV 70
           G PWP+ N+G+ Y D  +  D+G   +LI FYS  YKSSAPL GW++RI++ QIT+DGEV
Sbjct: 25  GTPWPEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLPGWIKRIRDGQITVDGEV 84

Query: 71  ITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRT 130
            TDP+ ILR GS LVY RLPW+EP  P+LL++LYED++MIALNKPSGLQVLP G+FQQRT
Sbjct: 85  ATDPDMILREGSKLVYHRLPWQEPFAPHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRT 144

Query: 131 VLTQLQW--WSSKQSFSVSE---ELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEG 190
           VL QLQ   W    SF       + HPVPVHRLGRGTSG+LLCAKTKLA+ Q AAYFAEG
Sbjct: 145 VLAQLQLKDWKMPSSFCSKRKDAQSHPVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAEG 204

Query: 191 TSSVRRNSTMEEGTK-RKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPS 250
            ++  ++    +  K RKISK YRALVTGI+ +DEV + QPIG ++YPGVA+GLY A  S
Sbjct: 205 ATNAGKSRDETDICKARKISKFYRALVTGILENDEVMITQPIGLVRYPGVAEGLYAACSS 264

Query: 251 GKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPNCL 310
           GKPA SKV VLER +   HTL+QVEI SGRPHQIRIHL+ IGHPL+ DPLY  GGQP   
Sbjct: 265 GKPAMSKVRVLERLKIHNHTLIQVEIHSGRPHQIRIHLAYIGHPLVDDPLYGIGGQPKFD 324

Query: 311 HSEVVN--QSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAP 370
             E  +   SFA DGGYERP +PVPGDCGY+LHAH L+L HP TNE       ++KI AP
Sbjct: 325 EPEPTSTADSFAYDGGYERPLQPVPGDCGYHLHAHWLVLCHPTTNE-------MIKITAP 384

Query: 371 LPPILRTRIEAED 374
           LP IL+TR E +D
Sbjct: 385 LPHILQTREEQQD 390

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy Swiss-Prot
Match: P72970 (Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1592 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-48
Identity = 124/333 (37.24%), Postives = 174/333 (52.25%), Query Frame = 0


Query: 36  LIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKEPDTP 95
           ++ FYS +Y  S   + W +RI+  QI +DG+ + DP   L+ G  L Y R PW EP+ P
Sbjct: 1   MLDFYSQRYLHS-ERQAWQERIEQGQIEVDGKTV-DPTYPLQAGQTLTYWRSPWVEPEVP 60

Query: 96  YLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHR 155
             L +L+ D ++ A++KPSGL VLPGG F   TVL QL+    ++S          P+HR
Sbjct: 61  LQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQLKIQYPQESL--------FPLHR 120

Query: 156 LGRGTSGILLCAKTKLARTQFAAYFAEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHD 215
           LG GTSG+LL  ++ L R + +  F E                    KIYR ++      
Sbjct: 121 LGTGTSGLLLLGRSTLGRRELSRQFRE----------------HICRKIYRTVIGPCDLP 180

Query: 216 DEVSVDQPIGRMQYPGVAQGLYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQ 275
           ++    Q IG++ YP +   +Y A+  GKPA S   +L R  +   T ++VEI++GRPHQ
Sbjct: 181 EKFECHQAIGKIPYPQLGY-IYAASSHGKPAQSYGRILARSPEK--TWLEVEIRTGRPHQ 240

Query: 276 IRIHLSSIGHPLLGDPLYVAGGQP-NCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHA 335
           IRIHL+S+G+PLLGD LY  GG P NC  +                    P D GY LH+
Sbjct: 241 IRIHLASLGYPLLGDRLYGPGGVPINCRTAR-------------------PSDGGYTLHS 278

Query: 336 HQLILYHPKTNEGFLVLLKVVKIIAPLPPILRT 368
           +QL   H  T +        +K+ APLPP L T
Sbjct: 301 YQLGFLHLHTQQ-------AIKLTAPLPPELIT 278

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy Swiss-Prot
Match: P33640 (Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rluD PE=3 SV=2)

HSP 1 Score: 127.9 bits (320), Expect = 2.5e-28
Identity = 104/326 (31.90%), Postives = 156/326 (47.85%), Query Frame = 0


Query: 46  SSAPLEGWLQRIKNEQITIDGEVITDPETILRIGSDLVYR-----RLPWKEPDTPYLLEI 105
           S + L GW   IK+ ++T+DG V+  P  I+  G+ LV       +  W   D    LEI
Sbjct: 32  SRSRLAGW---IKDGRLTVDGAVLR-PRDIVHSGAQLVLEAEQEAQGEWLAQDIE--LEI 91

Query: 106 LYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGT 165
           +YED  ++ ++KP+GL V P    Q  T+L  L +        ++       VHRL + T
Sbjct: 92  VYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVP----DIANVPRAGIVHRLDKDT 151

Query: 166 SGILLCAKTKLARTQFAAYFAEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSV 225
           +G+++ AKT  A T+  A                    R +S+IY A+V G+I     ++
Sbjct: 152 TGLMVVAKTLEAHTKLVAQL----------------QARSVSRIYEAIVIGVITSGG-TI 211

Query: 226 DQPIGRMQYPGVAQGLYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHL 285
           D PIGR    GV +       +GK A S   VLER     HT  +V++++GR HQIR+H+
Sbjct: 212 DAPIGR---HGVQRQKMAVVDAGKVAVSHYRVLERFRAHTHT--RVKLETGRTHQIRVHM 271

Query: 286 SSIGHPLLGDPLYVAGGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILY 345
           S IG+PL+GDP+Y    +   + S+ + Q+  E   + R            LHA  L L 
Sbjct: 272 SHIGYPLVGDPVYGGRFRIPPVASQTLVQTLRE---FPRQA----------LHARFLELD 312

Query: 346 HPKTN----------EGFLVLLKVVK 357
           HP T           E FL LL +++
Sbjct: 332 HPATGVRMKWESPLPEDFLWLLSLLR 312

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy Swiss-Prot
Match: P74346 (Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1629 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.8e-26
Identity = 95/311 (30.55%), Postives = 144/311 (46.30%), Query Frame = 0


Query: 57  IKNEQITIDGEVITDPETILRIGSDLVY---RRLPWKEPDTPYLLEILYEDNEMIALNKP 116
           I++ Q+  +G V  D   IL+ G  LV      +P         L+ILYED ++I +NKP
Sbjct: 54  IESGQVQRNGLVCQDKNLILKTGDRLVVNIPELIPLDVVAQNIPLDILYEDEQLIIINKP 113

Query: 117 SGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLAR 176
           +GL V PG      TV+  L       +  +     P  VHRL + T+G ++ AKT+LA 
Sbjct: 114 AGLVVHPGPGHPDGTVVNALLAHCPDLA-GIGGVQRPGIVHRLDKDTTGAMVVAKTELAL 173

Query: 177 TQFAAYFAEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVA 236
                   E T+                 ++Y  +V G   + + +V+ P+GR  +PG  
Sbjct: 174 HNLQVQLKEKTA----------------RRLYWGIVYGSPKEIQGTVNLPVGR--HPGDR 233

Query: 237 Q--GLYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDP 296
           Q  G+      G+ A +   +LER     H+ ++ ++++GR HQIR+H   +GHPL+GD 
Sbjct: 234 QKMGIVPVEKGGREAVTHWRLLER--IGNHSWLEFQLETGRTHQIRVHSKQMGHPLVGDN 293

Query: 297 LYVAGGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVL 356
           LY + G  N      VN               +PG     LHAHQL L HP + E     
Sbjct: 294 LYTSPGSVN------VN---------------LPGQA---LHAHQLSLIHPVSGE----- 312

Query: 357 LKVVKIIAPLP 363
             ++  IAP+P
Sbjct: 354 --IITAIAPMP 312

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy TrEMBL
Match: A0A1S3CPE8 (RNA pseudouridine synthase 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503310 PE=4 SV=1)

HSP 1 Score: 738.4 bits (1905), Expect = 1.5e-209
Identity = 359/376 (95.48%), Postives = 366/376 (97.34%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYS KYKSSAPLEGWLQRIKNE
Sbjct: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSCKYKSSAPLEGWLQRIKNE 60

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGS+LVYRRLPWKEPDTP+ LEILYED+EMIALNKPSGLQVLP
Sbjct: 61  QITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPSGLQVLP 120

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSS QSFS+SEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 121 GGVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 181 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240
           A+GTSSV RNST EEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT
Sbjct: 181 ADGTSSVIRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240

Query: 241 PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300
           PSGKPACSKVNVLERDEQ +HTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN
Sbjct: 241 PSGKPACSKVNVLERDEQGEHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300

Query: 301 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE-GFLVLLKVVKIIA 360
           CLHSEVVNQSFAEDGGYERP KPVPGDCGYYLHAHQLILYHPKTNE GFLVLLKVVKI+A
Sbjct: 301 CLHSEVVNQSFAEDGGYERPMKPVPGDCGYYLHAHQLILYHPKTNEKGFLVLLKVVKIVA 360

Query: 361 PLPPILRTRIEAEDVH 376
           PLPPILRTR EAED H
Sbjct: 361 PLPPILRTRSEAEDFH 376

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy TrEMBL
Match: A0A1S3CPT2 (RNA pseudouridine synthase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503310 PE=4 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 2.9e-205
Identity = 352/375 (93.87%), Postives = 359/375 (95.73%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYS KYKSSAPLEGWLQRIKNE
Sbjct: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSCKYKSSAPLEGWLQRIKNE 60

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGS+LVYRRLPWKEPDTP+ LEILYED+EMIALNKPSGLQVLP
Sbjct: 61  QITIDGEVITDPETILRIGSELVYRRLPWKEPDTPFSLEILYEDDEMIALNKPSGLQVLP 120

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSS QSFS+SEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 121 GGVFQQRTVLTQLQWWSSDQSFSISEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180

Query: 181 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240
           A+GTSSV RNST EEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT
Sbjct: 181 ADGTSSVIRNSTSEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240

Query: 241 PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300
           PSGKPACSKVNVLERDEQ +HTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN
Sbjct: 241 PSGKPACSKVNVLERDEQGEHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300

Query: 301 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAP 360
           CLHSEVVNQSFAEDGGYERP KPVPGDCGYYLHAHQLILYHPKTNE       VVKI+AP
Sbjct: 301 CLHSEVVNQSFAEDGGYERPMKPVPGDCGYYLHAHQLILYHPKTNE-------VVKIVAP 360

Query: 361 LPPILRTRIEAEDVH 376
           LPPILRTR EAED H
Sbjct: 361 LPPILRTRSEAEDFH 368

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy TrEMBL
Match: A0A0A0KS17 (PseudoU_synth_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G492340 PE=4 SV=1)

HSP 1 Score: 721.8 bits (1862), Expect = 1.4e-204
Identity = 355/376 (94.41%), Postives = 355/376 (94.41%), Query Frame = 0


Query: 1   MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 60
           MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE
Sbjct: 126 MLLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNE 185

Query: 61  QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 120
           QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP
Sbjct: 186 QITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLP 245

Query: 121 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 180
           GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF
Sbjct: 246 GGVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYF 305

Query: 181 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 240
           AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT
Sbjct: 306 AEGTSSVRRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVAT 365

Query: 241 PSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 300
           PSGKPACSKVN              VEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN
Sbjct: 366 PSGKPACSKVN--------------VEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPN 425

Query: 301 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAP 360
           CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE       VVKIIAP
Sbjct: 426 CLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNE-------VVKIIAP 480

Query: 361 LPPILRTRIEAEDVHE 377
           LPPILRTRIEAEDVHE
Sbjct: 486 LPPILRTRIEAEDVHE 480

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy TrEMBL
Match: A0A6J1FE06 (RNA pseudouridine synthase 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444674 PE=4 SV=1)

HSP 1 Score: 682.6 bits (1760), Expect = 9.6e-193
Identity = 331/374 (88.50%), Postives = 352/374 (94.12%), Query Frame = 0


Query: 2   LLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQ 61
           +LGRSFQVIGIPWPDLNDGLFYNDVVKP DSG SLI FYS KYKSSAPLEGWLQRI+NEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIEFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 62  ITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPG 121
           ITIDG+VITDPETILRIGS++VYRRLPWKEPDTPYLLE+LYED+EMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRLPWKEPDTPYLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 122 GVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFA 181
           GVFQQRTVLTQLQWWSSKQS SVSEELHPVPVHRLGRGTSGILLCAKT+LARTQFAAYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180

Query: 182 EGTSSV--RRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVA 241
           +GTS V   RN+TMEEGTKRKISKIYRALV GIIHDDEVS+DQPIGRM+YPGVAQGLYVA
Sbjct: 181 DGTSCVGRNRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 242 TPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 301
           T SGKPA SKVNVLERDEQ KHTLVQVEIQSGRPHQIRIHLSSIGHPL+GDPLYVAGGQP
Sbjct: 241 TSSGKPAYSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLIGDPLYVAGGQP 300

Query: 302 NCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIA 361
           NCLHSE+V+QSFAEDGGY+RPTKPVPGDCGYYLHAHQL+L+HPKT+E       VVKI+A
Sbjct: 301 NCLHSELVDQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLHHPKTSE-------VVKILA 360

Query: 362 PLPPILRTRIEAED 374
           PLPPILRT  E+ED
Sbjct: 361 PLPPILRTHGESED 367

[Close]

BLAST of CsaV3_5G025780 vs. ExPASy TrEMBL
Match: A0A6J1JY31 (RNA pseudouridine synthase 5 OS=Cucurbita maxima OX=3661 GN=LOC111489868 PE=4 SV=1)

HSP 1 Score: 677.9 bits (1748), Expect = 2.4e-191
Identity = 330/374 (88.24%), Postives = 350/374 (93.58%), Query Frame = 0


Query: 2   LLGRSFQVIGIPWPDLNDGLFYNDVVKPPDSGKSLIHFYSWKYKSSAPLEGWLQRIKNEQ 61
           +LGRSFQVIGIPWPDLNDGLFYNDVVKP DSG SLI FYS KYKSSAPLEGWLQRI+NEQ
Sbjct: 1   MLGRSFQVIGIPWPDLNDGLFYNDVVKPSDSGMSLIDFYSRKYKSSAPLEGWLQRIQNEQ 60

Query: 62  ITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPG 121
           ITIDG+VITDPETILRIGS++VYRR PWKEPDTP LLE+LYED+EMIALNKPSGLQVLPG
Sbjct: 61  ITIDGQVITDPETILRIGSEVVYRRFPWKEPDTPCLLEVLYEDDEMIALNKPSGLQVLPG 120

Query: 122 GVFQQRTVLTQLQWWSSKQSFSVSEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFA 181
           GVFQQRTVLTQLQWWSSKQS SVSEELHPVPVHRLGRGTSGILLCAKT+LARTQFAAYFA
Sbjct: 121 GVFQQRTVLTQLQWWSSKQSSSVSEELHPVPVHRLGRGTSGILLCAKTRLARTQFAAYFA 180

Query: 182 EGTSSV--RRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVA 241
           +GTS V   RN+TMEEGTKRKISKIYRALV GIIHDDEVS+DQPIGRM+YPGVAQGLYVA
Sbjct: 181 DGTSCVGRSRNNTMEEGTKRKISKIYRALVAGIIHDDEVSIDQPIGRMRYPGVAQGLYVA 240

Query: 242 TPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 301
           T SGKPA SKVNVLERDEQ KHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP
Sbjct: 241 TSSGKPAYSKVNVLERDEQGKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQP 300

Query: 302 NCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIA 361
           NCLHSE+V+QSFAEDGGY+RPTKPVPGDCGYYLHAHQL+L+HPKT+E       VVKI+A
Sbjct: 301 NCLHSELVDQSFAEDGGYQRPTKPVPGDCGYYLHAHQLVLHHPKTSE-------VVKIVA 360

Query: 362 PLPPILRTRIEAED 374
           PLPPILRT  E+ED
Sbjct: 361 PLPPILRTHGESED 367

[Close]

BLAST of CsaV3_5G025780 vs. TAIR 10
Match: AT3G52260.2 (Pseudouridine synthase family protein )

HSP 1 Score: 486.5 bits (1251), Expect = 1.9e-137
Identity = 246/369 (66.67%), Postives = 286/369 (77.51%), Query Frame = 0


Query: 8   QVIGIPWPDLNDGLFYNDVVKPPDSGKSLI-HFYSWKYKSSAPLEGWLQRIKNEQITIDG 67
           Q IG+PWP+LNDGL Y D +   +S  + +  FY  KYKSSAPL GW+QRI+N QI IDG
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDG 65

Query: 68  EVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQ 127
           EV+ DP T+LR GS LVY RLPWKEPDTPY LE+LYED+++IALNKPSGLQVLPGG+FQQ
Sbjct: 66  EVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQ 125

Query: 128 RTVLTQLQWWSSKQSFSVS--EELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGT 187
           RTVLTQLQW   K    +   E  HPVPVHRLGRGTSGILLCAKTKLA+T+ AAYFAEGT
Sbjct: 126 RTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGT 185

Query: 188 SSV-RRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSG 247
           S V   N   E GT RK+SKIYRAL  GI+ +DEV + QPIG ++YPGVAQGLYVA+P G
Sbjct: 186 SLVGSGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPEG 245

Query: 248 KPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPNCLH 307
           KPA SKV VLERD +   +LV+VEIQSGRPHQIRIHL+ +GHPL+GDPLYVAGGQP C  
Sbjct: 246 KPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLYVAGGQPKCFD 305

Query: 308 SEVVNQ--SFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAPL 367
            ++V+   +FAEDGGY RP + VPGDCGY+LHAHQ+ L         L   KVVKI+APL
Sbjct: 306 PDLVDDAAAFAEDGGYRRPNQAVPGDCGYHLHAHQVEL------PNLLNTHKVVKIVAPL 365

Query: 368 PPILRTRIE 371
           PPIL+TR E
Sbjct: 366 PPILQTRCE 368

[Close]

BLAST of CsaV3_5G025780 vs. TAIR 10
Match: AT3G52260.3 (Pseudouridine synthase family protein )

HSP 1 Score: 445.7 bits (1145), Expect = 3.8e-125
Identity = 241/416 (57.93%), Postives = 282/416 (67.79%), Query Frame = 0


Query: 8   QVIGIPWPDLNDGLFYNDVVKPPDSGKSLI-HFYSWKYKSSAPLEGWL------------ 67
           Q IG+PWP+LNDGL Y D +   +S  + +  FY  KYKSSAPL G+L            
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGFLLFFFLYSSSTII 65

Query: 68  ------------------QRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKEPDTPY 127
                             +   +  I IDGEV+ DP T+LR GS LVY RLPWKEPDTPY
Sbjct: 66  SFLLSILFNHLSFLGGFNESKTDRFIQIDGEVVKDPNTLLRSGSKLVYSRLPWKEPDTPY 125

Query: 128 LLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVS--EELHPVPVH 187
            LE+LYED+++IALNKPSGLQVLPGG+FQQRTVLTQLQW   K    +   E  HPVPVH
Sbjct: 126 SLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVH 185

Query: 188 RLGRGTSGILLCAKTKLARTQFAAYFAEGTSSV-RRNSTMEEGTKRKISKIYRALVTGII 247
           RLGRGTSGILLCAKTKLA+T+ AAYFAEGTS V   N   E GT RK+SKIYRAL  GI+
Sbjct: 186 RLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVGSGNLDQECGTGRKLSKIYRALADGIV 245

Query: 248 HDDEVSVDQPIGRMQYPGVAQGLYVATPSGKPACSKVNVLERDEQSKHTLVQVEIQSGRP 307
            +DEV + QPIG ++YPGVAQGLYVA+P GKPA SKV VLERD +   +LV+VEIQSGRP
Sbjct: 246 EEDEVVIKQPIGVVRYPGVAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGRP 305

Query: 308 HQIRIHLSSIGHPLL-----------------GDPLYVAGGQPNCLHSEVVNQ--SFAED 367
           HQIRIHL+ +GHPL+                 GDPLYVAGGQP C   ++V+   +FAED
Sbjct: 306 HQIRIHLAYMGHPLVEMTMFTGSECLRADQSAGDPLYVAGGQPKCFDPDLVDDAAAFAED 365

Query: 368 GGYERPTKPVPGDCGYYLHAHQLILYHPKTNEGFLVLLKVVKIIAPLPPILRTRIE 371
           GGY RP + VPGDCGY+LHAHQ+ L         L   KVVKI+APLPPIL+TR E
Sbjct: 366 GGYRRPNQAVPGDCGYHLHAHQVEL------PNLLNTHKVVKIVAPLPPILQTRCE 415

[Close]

BLAST of CsaV3_5G025780 vs. TAIR 10
Match: AT3G52260.1 (Pseudouridine synthase family protein )

HSP 1 Score: 389.0 bits (998), Expect = 4.2e-108
Identity = 195/284 (68.66%), Postives = 225/284 (79.23%), Query Frame = 0


Query: 8   QVIGIPWPDLNDGLFYNDVVKPPDSGKSLI-HFYSWKYKSSAPLEGWLQRIKNEQITIDG 67
           Q IG+PWP+LNDGL Y D +   +S  + +  FY  KYKSSAPL GW+QRI+N QI IDG
Sbjct: 6   QRIGLPWPELNDGLAYKDAISSSESELTTVSEFYFTKYKSSAPLLGWIQRIQNGQIQIDG 65

Query: 68  EVITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQ 127
           EV+ DP T+LR GS LVY RLPWKEPDTPY LE+LYED+++IALNKPSGLQVLPGG+FQQ
Sbjct: 66  EVVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQ 125

Query: 128 RTVLTQLQWWSSKQSFSVS--EELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGT 187
           RTVLTQLQW   K    +   E  HPVPVHRLGRGTSGILLCAKTKLA+T+ AAYFAEGT
Sbjct: 126 RTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGT 185

Query: 188 SSV-RRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSG 247
           S V   N   E GT RK+SKIYRAL  GI+ +DEV + QPIG ++YPGVAQGLYVA+P G
Sbjct: 186 SLVGSGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPEG 245

Query: 248 KPACSKVNVLERDEQSKHTLVQVEIQSGRPHQIRIHLSSIGHPL 288
           KPA SKV VLERD +   +LV+VEIQSGRPHQIRIHL+ +GHPL
Sbjct: 246 KPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPL 289

[Close]

BLAST of CsaV3_5G025780 vs. TAIR 10
Match: AT5G51140.1 (Pseudouridine synthase family protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-21
Identity = 77/273 (28.21%), Postives = 132/273 (48.35%), Query Frame = 0


Query: 32  SGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKE 91
           +GK+++  ++ ++K   P + ++  +K+ +I +DGE++  P + +   S  +   L   E
Sbjct: 72  TGKTIVDLFADEFK-GRPRDYYVGAVKSGRIKVDGEIV--PVSYIVKSSQKITHFLHRHE 131

Query: 92  PDTPYLLE---ILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEEL 151
           P  P +++   IL+++ +++ + KP+ + V P G +++ T++  L             +L
Sbjct: 132 P--PVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGIL---------DAEHDL 191

Query: 152 HPV-PVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSVRRNSTMEEGTKRKISKIYRA 211
             + P+HRL R  SG+L+ A+T  A+  F     EG                 + K Y A
Sbjct: 192 GTLFPIHRLDRLVSGLLIIART-AAKADFFRQQIEG---------------GMVKKRYIA 251

Query: 212 LVTGIIHDDEVSVDQPI------GRMQYPGVAQGLYVATPSGKPACSKVNVLERDEQSKH 271
            V G+  +DE+ VD  I      GR                GKPAC+K   +  D    H
Sbjct: 252 KVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRI--DTNGTH 311

Query: 272 TLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYV 295
           +LV  E  +GR HQIR+HL   GHP+  DPLY+
Sbjct: 312 SLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYL 312

[Close]

BLAST of CsaV3_5G025780 vs. TAIR 10
Match: AT5G51140.2 (Pseudouridine synthase family protein )

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-21
Identity = 77/273 (28.21%), Postives = 132/273 (48.35%), Query Frame = 0


Query: 32  SGKSLIHFYSWKYKSSAPLEGWLQRIKNEQITIDGEVITDPETILRIGSDLVYRRLPWKE 91
           +GK+++  ++ ++K   P + ++  +K+ +I +DGE++  P + +   S  +   L   E
Sbjct: 72  TGKTIVDLFADEFK-GRPRDYYVGAVKSGRIKVDGEIV--PVSYIVKSSQKITHFLHRHE 131

Query: 92  PDTPYLLE---ILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSVSEEL 151
           P  P +++   IL+++ +++ + KP+ + V P G +++ T++  L             +L
Sbjct: 132 P--PVMIDDVVILHQEPDVVTVCKPASVPVHPCGQYRKNTIVGIL---------DAEHDL 191

Query: 152 HPV-PVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSVRRNSTMEEGTKRKISKIYRA 211
             + P+HRL R  SG+L+ A+T  A+  F     EG                 + K Y A
Sbjct: 192 GTLFPIHRLDRLVSGLLIIART-AAKADFFRQQIEG---------------GMVKKRYIA 251

Query: 212 LVTGIIHDDEVSVDQPI------GRMQYPGVAQGLYVATPSGKPACSKVNVLERDEQSKH 271
            V G+  +DE+ VD  I      GR                GKPAC+K   +  D    H
Sbjct: 252 KVIGVFPEDEMIVDANINYNGSEGRSTAEDANSSGDDKKVKGKPACTKFTRI--DTNGTH 311

Query: 272 TLVQVEIQSGRPHQIRIHLSSIGHPLLGDPLYV 295
           +LV  E  +GR HQIR+HL   GHP+  DPLY+
Sbjct: 312 SLVSCEPVTGRTHQIRVHLQYTGHPIANDPLYL 312

The following BLAST results are available for this feature:

BLAST of CsaV3_5G025780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655311.1	7.7e-221	100.00	RNA pseudouridine synthase 5 isoform X2 [Cucumis sativus] >KAE8648514.1 hypothet...	[more]
XP_011655310.1	2.5e-219	99.47	RNA pseudouridine synthase 5 isoform X1 [Cucumis sativus]	[more]
XP_011655312.1	1.6e-213	97.62	RNA pseudouridine synthase 5 isoform X3 [Cucumis sativus]	[more]
XP_008465671.1	3.0e-209	95.48	PREDICTED: RNA pseudouridine synthase 5 isoform X1 [Cucumis melo]	[more]
XP_008465672.1	5.9e-205	93.87	PREDICTED: RNA pseudouridine synthase 5 isoform X2 [Cucumis melo]	[more]

BLAST of CsaV3_5G025780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5M721	2.7e-136	66.67	RNA pseudouridine synthase 5 OS=Arabidopsis thaliana OX=3702 GN=At3g52260 PE=2 S...	[more]
Q0DST9	3.3e-126	61.93	RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g02...	[more]
P72970	1.3e-48	37.24	Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis sp. (strain ...	[more]
P33640	2.5e-28	31.90	Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (stra...	[more]
P74346	8.8e-26	30.55	Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain ...	[more]

BLAST of CsaV3_5G025780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPE8	1.5e-209	95.48	RNA pseudouridine synthase 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503310 ...	[more]
A0A1S3CPT2	2.9e-205	93.87	RNA pseudouridine synthase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503310 ...	[more]
A0A0A0KS17	1.4e-204	94.41	PseudoU_synth_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G49...	[more]
A0A6J1FE06	9.6e-193	88.50	RNA pseudouridine synthase 5 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1JY31	2.4e-191	88.24	RNA pseudouridine synthase 5 OS=Cucurbita maxima OX=3661 GN=LOC111489868 PE=4 SV...	[more]

BLAST of CsaV3_5G025780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52260.2	1.9e-137	66.67	Pseudouridine synthase family protein	[more]
AT3G52260.3	3.8e-125	57.93	Pseudouridine synthase family protein	[more]
AT3G52260.1	4.2e-108	68.66	Pseudouridine synthase family protein	[more]
AT5G51140.1	1.3e-21	28.21	Pseudouridine synthase family protein	[more]
AT5G51140.2	1.3e-21	28.21	Pseudouridine synthase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006145	Pseudouridine synthase, RsuA/RluA-like	PFAM	PF00849	PseudoU_synth_2	coord: 107..281 e-value: 1.1E-24 score: 87.4
IPR006145	Pseudouridine synthase, RsuA/RluA-like	CDD	cd02869	PseudoU_synth_RluA_like	coord: 107..339 e-value: 5.1421E-50 score: 164.433
None	No IPR available	GENE3D	3.30.2350.10	Pseudouridine synthase	coord: 89..352 e-value: 4.2E-51 score: 175.6
None	No IPR available	PANTHER	PTHR21600:SF44	RNA PSEUDOURIDINE SYNTHASE 5	coord: 6..375
None	No IPR available	PANTHER	PTHR21600	MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE	coord: 6..375
None	No IPR available	PROSITE	PS50889	S4	coord: 55..101 score: 8.670267
IPR006224	Pseudouridine synthase, RluC/RluD, conserved site	PROSITE	PS01129	PSI_RLU	coord: 153..167
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	55120	Pseudouridine synthase	coord: 98..354

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G025780.1	CsaV3_5G025780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding