CsaV3_5G025690 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G025690
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RRM domain-containing protein
Location	chr5: 20809648 .. 20809987 (-)
RNA-Seq Expression	CsaV3_5G025690
Synteny	CsaV3_5G025690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTCCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAG

mRNA sequence

ATGGGGTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTCCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAG

Coding sequence (CDS)

ATGGGGTTTCCTGTTTTTGCGGTGAAGAGGTTGGGGAAAGGTGGCATTGCCCTCACTGAGCCAAGTGATTCCGACATTGGCTTTGATGAATTTTTCGATGAGGGTGAGGATAATTTTCAGGACGAGGATGATATTCTTTTGCCGTTAAAGAACACGAAAGAGTGGCATGCGGCGAGGCCTCGTGGATTTGGAGAAGGGAAGGTGTATGATACTTCGATTGAAGACAACTTGCTACAAGAAATGGAGCAGATTAGGGAAGCTCAAGCTGCTAATATCAATAAGCTCAAGGATCAATCTCCTTCTAATCCCAACTCTAGTAGAAATGTCGTAGAGATAGCAG

Protein sequence

MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIAX

Homology

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BLAST of CsaV3_5G025690 vs. NCBI nr
Match: XP_011655304.2 (uncharacterized protein LOC105435514 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60
           MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP
Sbjct: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60

Query: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 114
           RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
Sbjct: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 113

[Close]

BLAST of CsaV3_5G025690 vs. NCBI nr
Match: KAE8648512.1 (hypothetical protein Csa_008160, partial [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 2.4e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60
           MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP
Sbjct: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60

Query: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 114
           RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
Sbjct: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 113

[Close]

BLAST of CsaV3_5G025690 vs. NCBI nr
Match: XP_031741253.1 (uncharacterized protein LOC101210443 [Cucumis sativus] >XP_031741254.1 uncharacterized protein LOC101210443 [Cucumis sativus] >XP_031741255.1 uncharacterized protein LOC101210443 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60
           MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP
Sbjct: 48  MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 107

Query: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 114
           RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIA
Sbjct: 108 RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160

[Close]

BLAST of CsaV3_5G025690 vs. NCBI nr
Match: KAE8648511.1 (hypothetical protein Csa_008404 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60
           MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP
Sbjct: 48  MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 107

Query: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 114
           RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIA
Sbjct: 108 RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 160

[Close]

BLAST of CsaV3_5G025690 vs. NCBI nr
Match: KAA0040563.1 (glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK05606.1 glutamic acid-rich protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 4.1e-48
Identity = 103/121 (85.12%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFF--------DEGEDNFQDEDDILLPLKNT 60
           MGFPVFA+KRLGKGGIALT+PSDSDI FDEFF        DE EDNFQDED+ILLPLKNT
Sbjct: 48  MGFPVFAMKRLGKGGIALTQPSDSDIDFDEFFDEDEDNFQDEDEDNFQDEDEILLPLKNT 107

Query: 61  KEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEI 114
           +EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+QS S PNSSRNVVEI
Sbjct: 108 REWHAARPRGFGEGKVYDTSIEDKLLQEMEQIREAQAANINKLKNQSSSKPNSSRNVVEI 167

[Close]

BLAST of CsaV3_5G025690 vs. ExPASy TrEMBL
Match: A0A0A0KS07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488780 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60
           MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP
Sbjct: 88  MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 147

Query: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 114
           RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA
Sbjct: 148 RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 200

[Close]

BLAST of CsaV3_5G025690 vs. ExPASy TrEMBL
Match: A0A0A0KQN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.7e-56
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60
           MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP
Sbjct: 88  MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 147

Query: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEIA 114
           RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQS SNPNSSRNVVEIA
Sbjct: 148 RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSSSNPNSSRNVVEIA 200

[Close]

BLAST of CsaV3_5G025690 vs. ExPASy TrEMBL
Match: A0A5D3C5E5 (Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00620 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 103/121 (85.12%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFF--------DEGEDNFQDEDDILLPLKNT 60
           MGFPVFA+KRLGKGGIALT+PSDSDI FDEFF        DE EDNFQDED+ILLPLKNT
Sbjct: 48  MGFPVFAMKRLGKGGIALTQPSDSDIDFDEFFDEDEDNFQDEDEDNFQDEDEILLPLKNT 107

Query: 61  KEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEI 114
           +EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+QS S PNSSRNVVEI
Sbjct: 108 REWHAARPRGFGEGKVYDTSIEDKLLQEMEQIREAQAANINKLKNQSSSKPNSSRNVVEI 167

[Close]

BLAST of CsaV3_5G025690 vs. ExPASy TrEMBL
Match: A0A1S3CPG6 (uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.7e-48
Identity = 102/121 (84.30%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFF--------DEGEDNFQDEDDILLPLKNT 60
           MGFPVFA+KRLGKGGIALT+PSDSDI FDEFF        DE EDNFQDED+ILLPLKNT
Sbjct: 48  MGFPVFAMKRLGKGGIALTQPSDSDIDFDEFFDEDEDNFQDEDEDNFQDEDEILLPLKNT 107

Query: 61  KEWHAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVEI 114
           +EWHAARPRGFGEGKVYDTSIED LLQEMEQIREAQAANINKLK+Q  S PNSSRNVVEI
Sbjct: 108 REWHAARPRGFGEGKVYDTSIEDKLLQEMEQIREAQAANINKLKNQFSSKPNSSRNVVEI 167

[Close]

BLAST of CsaV3_5G025690 vs. ExPASy TrEMBL
Match: A0A6J1KJD4 (uncharacterized protein LOC111493728 OS=Cucurbita maxima OX=3661 GN=LOC111493728 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MGFPVFAVKRLGKGGIALTEPSDSDIGFDEFFDEGEDNFQDEDDILLPLKNTKEWHAARP 60
           M FPVF++K+ GKGG++LT  SDSDI FD     G+++  D D++LLPL N +EW AARP
Sbjct: 84  MYFPVFSLKKRGKGGVSLTNQSDSDIEFD-----GDEDL-DGDEMLLPLANMREWLAARP 143

Query: 61  RGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKDQSPSNPNSSRNVVE 112
           RGFGEGK YDTSIE+ LLQE+EQ R+AQAANINKLK Q PSNPNSSRNVV+
Sbjct: 144 RGFGEGKEYDTSIEEKLLQEIEQSRKAQAANINKLKSQPPSNPNSSRNVVD 188

[Close]

BLAST of CsaV3_5G025690 vs. TAIR 10
Match: AT1G70200.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 80.9 bits (198), Expect = 7.4e-16
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 2   GFPVFAVKRLGKGGIALTEPSDSDIGFDEFF------DEGEDNFQDEDDILLPLKNTKEW 61
           GF  FAV +   G   + E  D D   DE +      DEGE+  +DE +  LP+   K+W
Sbjct: 62  GFCSFAVNKRRSGDSVIVESDDDDEEDDEDWGEFDGEDEGEEEEEDEGE-FLPMDKMKKW 121

Query: 62  HAARPRGFGEGKVYDTSIEDNLLQEMEQIREAQAANINKLKD 98
              +PRGFG GK Y+T IED LL E+EQ  +AQAAN+NKLK+
Sbjct: 122 LEKKPRGFGLGKKYETLIEDKLLDEIEQSWKAQAANLNKLKN 162

The following BLAST results are available for this feature:

BLAST of CsaV3_5G025690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655304.2	2.4e-56	100.00	uncharacterized protein LOC105435514 [Cucumis sativus]	[more]
KAE8648512.1	2.4e-56	100.00	hypothetical protein Csa_008160, partial [Cucumis sativus]	[more]
XP_031741253.1	2.0e-55	99.12	uncharacterized protein LOC101210443 [Cucumis sativus] >XP_031741254.1 uncharact...	[more]
KAE8648511.1	2.0e-55	99.12	hypothetical protein Csa_008404 [Cucumis sativus]	[more]
KAA0040563.1	4.1e-48	85.12	glutamic acid-rich protein-like [Cucumis melo var. makuwa] >TYK05606.1 glutamic ...	[more]

BLAST of CsaV3_5G025690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G025690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS07	1.1e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488780 PE=4 SV=1	[more]
A0A0A0KQN3	9.7e-56	99.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1	[more]
A0A5D3C5E5	2.0e-48	85.12	Glutamic acid-rich protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CPG6	9.7e-48	84.30	uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=...	[more]
A0A6J1KJD4	2.8e-31	67.57	uncharacterized protein LOC111493728 OS=Cucurbita maxima OX=3661 GN=LOC111493728...	[more]

BLAST of CsaV3_5G025690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70200.1	7.4e-16	46.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 78..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..113
None	No IPR available	PANTHER	PTHR37200	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G025690.1	CsaV3_5G025690.1	mRNA