CsaV3_5G025310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G025310
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 20362729 .. 20367761 (-)
RNA-Seq ExpressionCsaV3_5G025310
SyntenyCsaV3_5G025310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGAACTTGTCGTCTCAGCCGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTACATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATTCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAGGGTGAAACCCCCCTTGATGGAGATCGGGTAATTTCATTTCAAAATCCAATTTAGGGTGATTTGTTCTAGTGGCTAGATTGACTAATAGAAGGAGCAGAGCAGGAAGAGATGAGTTTTTTTTTTATATAAATATTTTGTTGACCCTTTTTCTGGGTTTAGAGGCTTTCCAATTGATGAGGAATTAAATTCATATGATGAAAAACAATTCGAAAAAGAAAGTAGAAATCATAAGAATTCATCCAAAACGCCTCTTGTTAAAAATTGATGCGTTGTTTTCTTACTACTTTACTTTAGGTTGGATCGGTTCTCGTTTGAAAATTCTCTTTTGTTTTCCATGGTTTGTCCATATATTTTTTTCATTCAATTTTTTAAATCATGCAATTTTTTTCCTGTACAATTTTTCAGGGTGGAGTCATCTTTCAGTATCCATTAAACGAAAGGTATTTTGTTTACTATATTGATATATTTTTGTTTATGATGTTGGGTTGATGAAATTTAACTTCCATTCTACTTCAATATCCATAATCAAACAAACCTATCAAAATGGCCATTACTCTACAGTTCATGGCAAAATGGCCATTACTCTACAGCTCATGGCCACTGTGAGGTATTTTTCTTCTCTCTTAAAGAAATTGATCTTTCTCTTCACCTTAGAGTTTCCATTTTTCAAATGTATTTTTGATTGTGACTCAACTTACTGATATTTTGATGTATTTCTGTGTTTTTGTTTTCCTTAGTGAACATGGGTTGCTATATTTTTAGAATTCAAGGACACACTAGTACAACATAAACAAATCCTATTCAAGTAAAAGTTGTAAATATAAGTTGTGCTTACAAAAGGTGTTAATTGAGCATCTTTTTTATTTTTCATTATTTTTGTTTTCTTGTTTCTCATTACTTAGAAGTCAATTTGTTTATTTGTCTTATCCCGTTTCTCTTGTCCGAATTTTCCTTTGTTTTCATTGTACACATGAATCGAAATCTCAATCGAGGATATTTCTTTGTCAGTTTTCGATGGAAAGTTTTGCAATTGGGATGTGAGTGTAACGTTAGTTCAATTTTGACTTGGTTCTTGATGTCATATTGCCTCATGATGTCTTGGATTGTTGGGTTAGAGTTTGTTTGATAGATAACAAGATTCTTAGGATTAAATGTGATATTAGTGGATGTAAAGAAACAAGACTCGTCTGTTTAAGAGAAGTGTATATAATATGTAATTGGTCATTTGGATTACATCTTGTGAACTCTCTCGTATCATTTCTTAGTTGTAGTAGAAAAATGATTTGATGATTTCTATGGGAGCTCAAAAGCGTTGTAAAAGGGTGCTTGTAGTTTTGAACTTAATTGATATATGAATGTTCTTGGCCTTCAAGGTGGATGGACTTATGGAATAGGTTGAAGGAAAAACCTGAATGTTACATCCTCTCAGGCCTTTGTGAAGAATAAATAGGTACTAAGGCACATGATCTTATTGATTTAAACTCATTATGGATGTTGTTTGAGTAGTTGATGGGTAGGACCTTTGTTACTGAGGATAAAGTGGAATAAGAGGTATTTTATTTGGTGCAGAGGATTTTTGTTGAGACTATATGACATTCATGTTTGTTCGTTTCTTGGTTTTTTAGCAAAGAACAGTAACCTTACTGCTAGGAGAAGGTGATACCAATGACTACATAAAAGTTTATGATTCATTGCCTGTCAATTGATAGAACTAATTCATGCACAGCGGAAAAAGAATCGAATTTCTACCCTAATTGCCACAATTAACATCTAACCATAAACTAATCAAATTAGGGTTTTAAGAAGTATTACCTTTGAAGCTTTCAAAAGGTTTGATGTCTTCTTACCAATTCTACCCGAGACCACCACTAGTACTCAACTGCTATCCTCTAGACAAAGAACCGGGTTGTGGGACCCAATTTTGGTGTAGAAAGTAATGGAGATAAAATGAGATTGGAAGCTTTCTTTTTTCTTTTGTTGAGATTATGAAAATGATAAAAGAGGCAAAAGTCCTTCAACATTTGAAAACATCTCTATTTATAGCCTAATTACATGCAAAAATGCATGCAATTCAATTGCCAAATCTCAACACCTAATATTCCACTAACAATTAGTGGAACTTAGTGGGCTAGGTGTCTATATCTCATATAGCCACATATCCCACTAAGAGTTAGTGGGATTATCCAACAAAATGTTGGATTTTCCCACTAACTTAGTCCAAGGGTAAAATGGTCATTAGATTTTTCTAGTCAAAAGTCAAACTTTGACTTTTCTAAGTCAAAAGTCAATATTTTGACTTTTTACCATTTTGTCCGTCTTGACTAATTCCAACCTCCCGAGCATGAATCCGCATTCATTTTTCCAAAATTCAAATCACATTTGAATATAAGGCCGGTCAAAGTTTGACTTTTCAAAGTCAAAAGTCAACATTTTGACTTTTTACTATTTTTGACCAATTCCGAGCTTCTTAGTATGAATCCGCATTCATACTTATAGTATGTAAAACATAAAGCTCTATTTCTAATTAGAAGACCGACGATTATATCACTGTATATGTCGGTTTTCCTTTCTTCTCCCTATTCGAACAATTCGACTTATTTCATCACACTGTTCTAAGTTTAATCCATATGAGCTAGCAGAGGAACCTAATGGACCTATAGATCATGGGCTCCAACGATTCAAGATTAACTAGCTAAACTCTTTTAAACCGAGTTAATCAACATTCGTTAACTAACGGGTCATTCCACTAAAGTCCCGTAGTTGCACTCCCCTCACTATAGATATATTTGTGTCCATTTGATAAAACCATAATCAGTAAGTTAATCCTTCACAGGTTGCTCGTAACCTTGGCTGGGTCAAAATACCGTTTTACCCCCAAGATTACATCTTGCTCCTTAAGTCCCACTAATCCACTATTGAACAATTGGTTTAAGGTTCAACCTATAAACTTAATCCCTCTCGGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACTTGGATTCAGTGCTTAAGAGAGCAACCTATCTACTAACCCTAAAGCGGGTAGGAGTGAATTCCATCTTGTACCCTATGTTCCCAGCTATCCACCCGATCTTACCCCTGAAATGGGAGGCTTATTGGGCCAACGCTGATGAGCTGCCCTCACCTATGCAGATCTAAGGATAATCTCGTATGAACAGGAGTTCATAGTTAACTCAGGATTAAGACTAAGTTACCTAGGTCATCAATAATTGAGATAGTCAGTTTTAAACAGTAAACGGTGTTATAACGTAAAAATGACTAATTCATGGTTCAGTCTTATGTAAACATTTTACATAGGATGCCCCCACTTTCATGTCTCTACATGAACGATTAGGATCACATCGTTTGTACTACAAAGTGGGCCGCATCCATAGTTTCTCTAAATAAGGCGCCCAACCTTTATTTCATATACTATAGACTATTTAGGCTATATACTCGAACTTGATCCACGTTTATGTTTACACATAAAGTTCAAGTTTATTCAAAAAATAGCCTTGGAACTTGATTTATTGGATTTAAGATTATAATATTTAATTTCTCAATAACAACTTTATTGAACAGAATATGATTTACAAACTACGAGTTTTAGGACAAAATTCCAACATCAATATCCTAAATTCATAAGATTTGGTCTGCTCTATACCTTGCCGCAAAAAGATTTACATTGTGAGTGTAGGAATTAAAAAAGACATAGTTTTGTTAAGTAGTATATGAGTAACATTCTCAATCCTTCAACTGCAAAATAATAATAAAGACATGAAATGTGAGCTCGATATCTTCTGCAATTTTAATGATCTTTAGGTATTTACATTGTTTTCAATTATTGTTCCTTCTTTTACACAGTTATTCACTATTAAGTTCGAAACCTGGAATAAACTAGGTTGAAATGCACAAGTAGGTTGTTATATCTTTATTGTTGAAATGCCAAATTCAAAGTAAGCCAGGATTTTCAACTTTAATTGAACGGTTGAAATGTCGTGTTTTTGTTATTTGGCATTCTGATTAACCAAGTAAATTAGCCTACATTGTGATTGTGTTATGTGTTATTTAAGATTTTAGGCCTAAGGTTCAAATAGTTGTCATAAAAACTCTCTAACCCTATTGATGTTTATGTAATTTGTATTATCTCATATTTTCTCTGTTAATAGCTTAATAAAACTACTCTCTTCCTCAGCCCGTGGATATAGCTATGTTGATCTTTATTGTTTGCACTTTCTCGCTTTCTTTATTTGTTGATTTCGTAACAATTTCTGTTTTGGGTTTGGAAAAATAACACACTAACTATTATGCAGAAGAGAATCTGTATATGGAAAAAGTGCAGGGCCACTTCCTCCTCCTCCTGAAGTCATCAATTATGACAATGCAGTTGCAAACCAAATTTTGGAGAATGCAAAAGCTGAAAAACATAGTTCCTCATCTGAATCGATAACTTCGCTTTTATTTTATTTATGGAGTTTTCTAAGAATGAGAGAACCAAACATGTGTGGCTTTACAATTACTCTAGGAAAATTTTGTTGAAATCTGGGGTTTAAGATTGATTAAGGCAACAAGTTGTGAGAGCCTTGTCTACTGAAACAAAAGAAATTTCTCTTTTGTTTCATGACTTCATTAATATAAATTATTAATTAAATGTCTCTTGTTCAAGGTCTGCCCCATATGCCTCACAAACCCAAAGGACATGGCTTTTGCATGTGGTCATACA

mRNA sequence

ATGCAGAACTTGTCGTCTCAGCCGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTACATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATTCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAG

Coding sequence (CDS)

ATGCAGAACTTGTCGTCTCAGCCGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTACATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATTCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAG

Protein sequence

MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLSFGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG*
Homology
[Close]
BLAST of CsaV3_5G025310 vs. NCBI nr
Match: KAE8648488.1 (hypothetical protein Csa_008176 [Cucumis sativus] >KAE8653143.1 hypothetical protein Csa_019786 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 4.5e-46
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60
           MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS
Sbjct: 1   MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60

Query: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 103
           FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG
Sbjct: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 102

[Close]
BLAST of CsaV3_5G025310 vs. NCBI nr
Match: KAE8648279.1 (hypothetical protein Csa_017817 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60
           MQNLSSQPLHSQS SQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS
Sbjct: 1   MQNLSSQPLHSQSPSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60

Query: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 103
           FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG
Sbjct: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 102

[Close]
BLAST of CsaV3_5G025310 vs. ExPASy TrEMBL
Match: A0A0A0LX17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G408740 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLC 51
          MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLC
Sbjct: 1  MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLC 50

The following BLAST results are available for this feature:
BLAST of CsaV3_5G025310 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648488.14.5e-46100.00hypothetical protein Csa_008176 [Cucumis sativus] >KAE8653143.1 hypothetical pro... [more]
KAE8648279.11.7e-4599.02hypothetical protein Csa_017817 [Cucumis sativus][more]
BLAST of CsaV3_5G025310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G025310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX171.2e-15100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G408740 PE=4 SV=1[more]
BLAST of CsaV3_5G025310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G025310.1CsaV3_5G025310.1mRNA