CsaV3_5G024630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G024630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5: 19514373 .. 19515164 (+)
RNA-Seq Expression	CsaV3_5G024630
Synteny	CsaV3_5G024630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTGAAGCAAGTTCCAGTTTCTCTTCAATGTCTCCATCGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAGGAGGATTATGAAATTTCTGTTCTTCCAGGCAATCCTACCATGACGCAAATCAAAGCACAAAAGGAAAAGAAGACAAAGAAATCCAAGGCAAAGGCCTGTTTGTTCGCTGCAGTCTCATCTACTATCTTCACTCGAATTATGAGTCTGAAATTAGCATATGAGATATGGAATTATCTCAAGCCAGAGTATGAAGGTAATGAGAGAATCAAAGGAATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAAAAAATGAAGGAAACAAAATCAATTAAAGAGTATTCTGTTAGGTTGCTGAACATTGCAAATCAAATCAGATTACTCGGTTCTGAGTTCAAGGACTCGAGAGTTGTTGAAAAAATTCTTGTATTAGTGCCAGAAAAATTTGAGGCATCTATTTGTGCTTTAGAAAATACCAAAGATTTAACTCAAATTACTCTTGCAGAGATGCTCAATGCTTTGCAAGCACAGGAACAAAGAAGAGCCATGAGACATGAAGGTGCTGTTGAAGGATCCTTCCCAGCCAAGCATCATGAGAATGCTAGAATCAAATTTCTTCAAGTGAATCTTCAGCTTACAACAGAGCAGGAGTCAAGAAAGGATCCTACCTTCGATGTCAACATTGCAATAAATTGGGTCATCCTCCTTTTAAATGTTTGA

mRNA sequence

ATGGATGTTGAAGCAAGTTCCAGTTTCTCTTCAATGTCTCCATCGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAGGAGGATTATGAAATTTCTGTTCTTCCAGGCAATCCTACCATGACGCAAATCAAAGCACAAAAGGAAAAGAAGACAAAGAAATCCAAGGCAAAGGCCTGTTTGTTCGCTGCAGTCTCATCTACTATCTTCACTCGAATTATGAGTCTGAAATTAGCATATGAGATATGGAATTATCTCAAGCCAGAGTATGAAGGTAATGAGAGAATCAAAGGAATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAAAAAATGAAGGAAACAAAATCAATTAAAGAGTATTCTGTTAGGTTGCTGAACATTGCAAATCAAATCAGATTACTCGGTTCTGAGTTCAAGGACTCGAGAGTTGTTGAAAAAATTCTTGTATTAGTGCCAGAAAAATTTGAGGCATCTATTTGTGCTTTAGAAAATACCAAAGATTTAACTCAAATTACTCTTGCAGAGATGCTCAATGCTTTGCAAGCACAGGAACAAAGAAGAGCCATGAGACATGAAGGTGCTGTTGAAGGATCCTTCCCAGCCAAGCATCATGAGAATGCTAGAATCAAATTTCTTCAAGTGAATCTTCAGCTTACAACAGAGCAGGAGTCAAGAAAGGATCCTACCTTCGATGTCAACATTGCAATAAATTGGGTCATCCTCCTTTTAAATGTTTGA

Coding sequence (CDS)

ATGGATGTTGAAGCAAGTTCCAGTTTCTCTTCAATGTCTCCATCGATATTTGATGGAGACAACTACCAAGTTTGGGCAGTTCGTATGGAGGCATATATGGAAGCTTTGGATATTTGGGAAGCAGTGGAGGAGGATTATGAAATTTCTGTTCTTCCAGGCAATCCTACCATGACGCAAATCAAAGCACAAAAGGAAAAGAAGACAAAGAAATCCAAGGCAAAGGCCTGTTTGTTCGCTGCAGTCTCATCTACTATCTTCACTCGAATTATGAGTCTGAAATTAGCATATGAGATATGGAATTATCTCAAGCCAGAGTATGAAGGTAATGAGAGAATCAAAGGAATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAAAAAATGAAGGAAACAAAATCAATTAAAGAGTATTCTGTTAGGTTGCTGAACATTGCAAATCAAATCAGATTACTCGGTTCTGAGTTCAAGGACTCGAGAGTTGTTGAAAAAATTCTTGTATTAGTGCCAGAAAAATTTGAGGCATCTATTTGTGCTTTAGAAAATACCAAAGATTTAACTCAAATTACTCTTGCAGAGATGCTCAATGCTTTGCAAGCACAGGAACAAAGAAGAGCCATGAGACATGAAGGTGCTGTTGAAGGATCCTTCCCAGCCAAGCATCATGAGAATGCTAGAATCAAATTTCTTCAAGTGAATCTTCAGCTTACAACAGAGCAGGAGTCAAGAAAGGATCCTACCTTCGATGTCAACATTGCAATAAATTGGGTCATCCTCCTTTTAAATGTTTGA

Protein sequence

MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQIKAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNLIREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICALENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENARIKFLQVNLQLTTEQESRKDPTFDVNIAINWVILLLNV*

Homology

[Close]

BLAST of CsaV3_5G024630 vs. NCBI nr
Match: KAE8648457.1 (hypothetical protein Csa_009345 [Cucumis sativus])

HSP 1 Score: 507.7 bits (1306), Expect = 6.1e-140
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI
Sbjct: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL
Sbjct: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENARIKFLQVNLQLTTEQ 240
           ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENARIKFLQVNLQLTTEQ
Sbjct: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENARIKFLQVNLQLTTEQ 240

Query: 241 ESRKDPTFDVNIAINWVILLLNV 264
           ESRKDPTFDVNIAINWVILLLNV
Sbjct: 241 ESRKDPTFDVNIAINWVILLLNV 263

[Close]

BLAST of CsaV3_5G024630 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 381.7 bits (979), Expect = 5.1e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 240

Query: 241 TTEQES 243
           +T + S
Sbjct: 241 STRESS 245

[Close]

BLAST of CsaV3_5G024630 vs. NCBI nr
Match: KAA0064094.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 381.7 bits (979), Expect = 5.1e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 240

Query: 241 TTEQES 243
           +T + S
Sbjct: 241 STRESS 245

[Close]

BLAST of CsaV3_5G024630 vs. NCBI nr
Match: TYK21117.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 381.7 bits (979), Expect = 5.1e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 117 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 176

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 177 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 236

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 237 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 296

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 297 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 356

Query: 241 TTEQES 243
           +T + S
Sbjct: 357 STRESS 361

[Close]

BLAST of CsaV3_5G024630 vs. NCBI nr
Match: TYK00004.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 381.7 bits (979), Expect = 5.1e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 620 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 679

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 680 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 739

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 740 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 799

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 800 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 859

Query: 241 TTEQES 243
           +T + S
Sbjct: 860 STRESS 864

[Close]

BLAST of CsaV3_5G024630 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.5e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 240

Query: 241 TTEQES 243
           +T + S
Sbjct: 241 STRESS 245

[Close]

BLAST of CsaV3_5G024630 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.5e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 240

Query: 241 TTEQES 243
           +T + S
Sbjct: 241 STRESS 245

[Close]

BLAST of CsaV3_5G024630 vs. ExPASy TrEMBL
Match: A0A5D3BL45 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00490 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.5e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 620 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 679

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 680 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 739

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 740 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 799

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 800 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 859

Query: 241 TTEQES 243
           +T + S
Sbjct: 860 STRESS 864

[Close]

BLAST of CsaV3_5G024630 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.5e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 117 MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 176

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 177 KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 236

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 237 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 296

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 297 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 356

Query: 241 TTEQES 243
           +T + S
Sbjct: 357 STRESS 361

[Close]

BLAST of CsaV3_5G024630 vs. ExPASy TrEMBL
Match: A0A5D3CLD6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002910 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.5e-102
Identity = 205/246 (83.33%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MDVEASSSFSSMSPSIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEISVLPGNPTMTQI 60
           MD   SSSF+S+SP IFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEI  LP NPTM QI
Sbjct: 1   MDAITSSSFTSISPLIFDGDNYQVWAVRMEAYMEALDIWEAVEEDYEIPALPDNPTMAQI 60

Query: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMSLKLAYEIWNYLKPEYEGNERIKGMCVLNL 120
           KAQKEKKTKKSKAKACLFAAVSSTIFTRIM+L+ AYEIWNYLK EYEG+ERIKGM VLNL
Sbjct: 61  KAQKEKKTKKSKAKACLFAAVSSTIFTRIMTLRSAYEIWNYLKSEYEGDERIKGMRVLNL 120

Query: 121 IREFELQKMKETKSIKEYSVRLLNIANQIRLLGSEFKDSRVVEKILVLVPEKFEASICAL 180
           IREFELQKMKET+SIKEYSVRLL+IANQIRLLGS FKDSR+VEKILV VPEKFEASI AL
Sbjct: 121 IREFELQKMKETESIKEYSVRLLDIANQIRLLGSVFKDSRIVEKILVSVPEKFEASISAL 180

Query: 181 ENTKDLTQITLAEMLNALQAQEQRRAMRHEGAVEGSFPAKHHENAR----IKFLQVNLQL 240
           ENTKDLTQITLAE+LNALQAQEQRRAMR EGAVEG+ PAKHHEN R     KF + N Q+
Sbjct: 181 ENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHENVRNNKKKKFFKKN-QI 240

Query: 241 TTEQES 243
           +T + S
Sbjct: 241 STRESS 245

The following BLAST results are available for this feature:

BLAST of CsaV3_5G024630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648457.1	6.1e-140	100.00	hypothetical protein Csa_009345 [Cucumis sativus]	[more]
TYJ95793.1	5.1e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064094.1	5.1e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21117.1	5.1e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK00004.1	5.1e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of CsaV3_5G024630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G024630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2V7	2.5e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DMJ1	2.5e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BL45	2.5e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	2.5e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CLD6	2.5e-102	83.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of CsaV3_5G024630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 17..43 e-value: 3.6E-12 score: 45.7
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 67..207 e-value: 1.3E-25 score: 89.8
None	No IPR available	PANTHER	PTHR35317:SF13	ZINC FINGER, CCHC-TYPE-RELATED	coord: 4..219
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 4..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G024630.1	CsaV3_5G024630.1	mRNA