CsaV3_5G024410 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G024410
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtease Do-like 8
Locationchr5: 19239651 .. 19242166 (-)
RNA-Seq ExpressionCsaV3_5G024410
SyntenyCsaV3_5G024410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGGAGAGGAGGTGGTGGAATGTGGAGGAGGAAGAGATGAGGATGATGATGTGGGAGAGGGAGTTGGGGCGGCAGTGGCGGGGACGAAGAGCGAGGAAGAAAGGGTGGGAAGTGGAGGAGTTCCATGACTTGGAGACGGAGGAGAAAAGAAGAAGAGGTTTGGTCATGGGGAGTTTTGTGAGGATTTTGGAAGATTATGATGTATTTCTTCAGGCAGTCGAGGAAGAAGAAGATTATGATCATCAAGAAAAATGGAGGGACATTACTATTATTTTTTGTGGAAATTTTCTTGTGTTAGTTTTTTTTATATGTGGGTTGATTTTTGTTGTGTTTGATGATGATCACAATGTTGAAACGCCAACTCTAACAAAAAAAAAAGTGCATAGATGACAAGTTGTGTTTCCTGTAAATTGTACTTCAACTTATTGTTAGATGATATATATGTCTAAACAAGGTGAATAATTCTCACCTTGATAAACCTTACATTAATTTATATAATATTGTGTTTCATCATTACAATGAATTACTTTGATTAGCGAGTTTGTAGTCGTTGAACAAAATAATACCATTGAAAATGTTCATTATTATGCTAATGTTTAGCTACCCACACATAAATAAATTTATCATGTAATTTAGTTACTATCACTGTTATATTATTTTGTGTAATATATAATGTAATTTTGCAAAGACTTTTGTGTTTAGATGCAAATAAATTTTCACATTAGCTAGGGAAATAAATAGAGATTTATGGTGTACAAGTGAGCACAATGATAACTATTGGTATAAAAATGTTTTTGGGTGGTAGTAAAGCCCTACAATTGTGGGAACATTTTGAAGGTTGATAGTCCTTACCAATTTATGTTAAAATCATAGTCTAAACTAAGGTGTGTATGTTGGTGATATCCTCAAAACTAAAGTTGTGTGGATTTGGATATGGAGAGCATGTGTATATATTTATTGAGGGGAGGAAACTAAGTGTGTGTAATATTGGTTCATTCGCAATATGATATTTGGTTGTGCATTACTTGGCTTTGCTCTAGGACTTGATTAAAAAAAAAAAAAAACTTGAGTAGGCAATCAGAGTTTATGGTTGAGAAGGGATTCACAATGGGTACTTCATTCAATGAAAAAATTGTTAGCTGCAAACAAAGTCTAACAATGGTTAGAAAATATATGAAAAGTTGACTAACCAAATAGATCATACAGCGAAATTGATAGGAGAGTACATTTTTATTTGAGGGAAGAAGATTAAGGAGTGCGATAGTAGGTTAATGTCTACTATATTCCACAATGTATAAGTACAGACAATTAGCCCTTTTACGTCATTTATAAAACAAAATCTCGAGTTTGTTTAAAGCGGTCAATGTCACATAATTGTAGAGATATATATAGTGTTTCATTATATTTAGATAATCATGTATGACATTTTACATTTTCTTAAAAAAAATTGAATGTAAGTTGATATATATGCTATGCTACTTCAAGAAAAATGACATTTTATAACAGTTCAATACAACCAAAATTAAAAGTAGCTAGTGAAGTAAAAACGGTTGTAAAATGTGAAAATTCATGTTTTTGACGGAAAAAGCGTTGTTTTCAAATTCTACCTTTTCGTGACATCTATTTGTTGTTTAAAACATTAAATAATTTATTTATTAAAATAAATCTTAATTTTATATCCCAAAAAATGTGAAAGTCACACCCTTTCTCTAATTCGTCTTCCTCTTCGAACCTCACTCCACCTACCAGACCATCAGACGAACAACCAATGTCGACCTCTCCAAACGGCTACTCTTGACTTGACTCCGGAACTCTTCCACAAGGGATGAGGATAGACGCTTCCTATTTGGTCTCTTGATACCCGACTCTGCTGAAACTCCCTACGGTGGAGATCCCATTCTTTCTACTCGGCCTATTCACACTACTAGGGGGGTCTTCATGAGACTGGGCGAGAGCCTAAAGAACTCTTGTATCTGAGTGATTGGCGGACGATTTCAGTTATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGGTGACATTTTCTCAAGTTATTCTTCTTCTTCTTCTTCTTCCTTCCCATTTCTTTCTTTTGGTTTTCTGTCTCTGTATTAAAAATTATTTGCTGAGATGAGACACTCTCTTTTACTTGTCAGACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGTTGTTTCTCTCCTTTTTTGTTTTTCTGCATTGTTTGATCAATTTTTTGCTTTTAGCCATTGATATGCTTTTAGGTGTTTCAGCTTCAAGTTTTGTTGTTGGCTGTTGTTTTGAATTTTGTGTGAAGTTCTCTAATTAATTTAGCTGATTATTATTCAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

mRNA sequence

ATGGGGATGGAGAGGAGGTGGTGGAATGTGGAGGAGGAAGAGATGAGGATGATGATGTGGGAGAGGGAGTTGGGGCGGCAGTGGCGGGGACGAAGAGCGAGGAAGAAAGGGTGGGAAGTGGAGGAGTTCCATGACTTGGAGACGGAGGAGAAAAGAAGAAGAGGTTTGGTCATGGGGAGTTTTGTGAGGATTTTGGAAGATTATGATGTATTTCTTCAGGCAGTCGAGGAAGAAGAAGATTATGATCATCAAGAAAAATGGAGGGACATTACTATTATTTTTTGTGGAAATTTTCTTGTTTATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

Coding sequence (CDS)

ATGGGGATGGAGAGGAGGTGGTGGAATGTGGAGGAGGAAGAGATGAGGATGATGATGTGGGAGAGGGAGTTGGGGCGGCAGTGGCGGGGACGAAGAGCGAGGAAGAAAGGGTGGGAAGTGGAGGAGTTCCATGACTTGGAGACGGAGGAGAAAAGAAGAAGAGGTTTGGTCATGGGGAGTTTTGTGAGGATTTTGGAAGATTATGATGTATTTCTTCAGGCAGTCGAGGAAGAAGAAGATTATGATCATCAAGAAAAATGGAGGGACATTACTATTATTTTTTGTGGAAATTTTCTTGTTTATGCTGCTGAGCCAGCAACGGGGCTCCTTTCTATTTCCGACTATCTCAAATGTAGTCTGTCACCGCCAATCGTCACCCACCGTCCATCTCCGAAACTCCTCATCCGCTGTCGACGCTATTCATCTTCTTCTCAACCTTCTATTTCAGATCCCAGCACTTTAGAATCCATTTTCATTCAAAGGAGGGCTGATGATGACTCTGGGCATCTTGGTTCTGTAGTGAGCAGATAA

Protein sequence

MGMERRWWNVEEEEMRMMMWERELGRQWRGRRARKKGWEVEEFHDLETEEKRRRGLVMGSFVRILEDYDVFLQAVEEEEDYDHQEKWRDITIIFCGNFLVYAAEPATGLLSISDYLKCSLSPPIVTHRPSPKLLIRCRRYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR*
Homology
[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: KAE8648444.1 (hypothetical protein Csa_008587 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MGMERRWWNVEEEEMRMMMWERELGRQWRGRRARKKGWEVEEFHDLETEEKRRRGLVMGS 60
           MGMERRWWNVEEEEMRMMMWERELGRQWRGRRARKKGWEVEEFHDLETEEKRRRGLVMGS
Sbjct: 1   MGMERRWWNVEEEEMRMMMWERELGRQWRGRRARKKGWEVEEFHDLETEEKRRRGLVMGS 60

Query: 61  FVRILEDYDVFLQAVEEEEDYDHQEKWRDITIIFCGNFLVYAAEPATGLLSISDYLKCSL 120
           FVRILEDYDVFLQAVEEEEDYDHQEKWRDITIIFCGNFLVYAAEPATGLLSISDYLKCSL
Sbjct: 61  FVRILEDYDVFLQAVEEEEDYDHQEKWRDITIIFCGNFLVYAAEPATGLLSISDYLKCSL 120

Query: 121 SPPIVTHRPSPKLLIRCRRYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SPPIVTHRPSPKLLIRCRRYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR
Sbjct: 121 SPPIVTHRPSPKLLIRCRRYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 176

[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: XP_008459309.1 (PREDICTED: protease Do-like 8, chloroplastic [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 41  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 75

[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: TYK15258.1 (protease Do-like 8 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 50  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 84

[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: KAA0039504.1 (protease Do-like 8 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 50  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 84

[Close]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match: XP_004148708.1 (protease Do-like 8, chloroplastic [Cucumis sativus] >KAE8648918.1 hypothetical protein Csa_008511 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-05
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S PST ESIFIQRRADDDSG LGSVV+R
Sbjct: 41  SSSQPSTSSPSTSESIFIQRRADDDSGDLGSVVNR 75

[Close]
BLAST of CsaV3_5G024410 vs. ExPASy TrEMBL
Match: A0A0A0KQE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G431520 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 

Query: 139 RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR
Sbjct: 61  RYSSSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 98

[Close]
BLAST of CsaV3_5G024410 vs. ExPASy TrEMBL
Match: A0A5A7T7R2 (Protease Do-like 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003250 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 50  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 84

[Close]
BLAST of CsaV3_5G024410 vs. ExPASy TrEMBL
Match: A0A5D3CVJ7 (Protease Do-like 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00330 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 50  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 84

[Close]
BLAST of CsaV3_5G024410 vs. ExPASy TrEMBL
Match: A0A1S3C9Y8 (protease Do-like 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498478 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-06
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 142 SSSQPSISDPSTLESIFIQRRADDDSGHLGSVVSR 177
           SSSQPS S+PST ESIFIQRRADDDSG LGSVVSR
Sbjct: 41  SSSQPSTSNPSTSESIFIQRRADDDSGDLGSVVSR 75

The following BLAST results are available for this feature:
BLAST of CsaV3_5G024410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648444.16.9e-95100.00hypothetical protein Csa_008587 [Cucumis sativus][more]
XP_008459309.11.3e-0588.57PREDICTED: protease Do-like 8, chloroplastic [Cucumis melo][more]
TYK15258.11.3e-0588.57protease Do-like 8 [Cucumis melo var. makuwa][more]
KAA0039504.11.3e-0588.57protease Do-like 8 [Cucumis melo var. makuwa][more]
XP_004148708.13.9e-0585.71protease Do-like 8, chloroplastic [Cucumis sativus] >KAE8648918.1 hypothetical p... [more]
BLAST of CsaV3_5G024410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G024410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQE11.1e-10100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G431520 PE=4 SV=1[more]
A0A5A7T7R26.4e-0688.57Protease Do-like 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G00... [more]
A0A5D3CVJ76.4e-0688.57Protease Do-like 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G0... [more]
A0A1S3C9Y86.4e-0688.57protease Do-like 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498478 PE=3 S... [more]
BLAST of CsaV3_5G024410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G024410.1CsaV3_5G024410.1mRNA